Wall clock time and date at job start Wed Apr 1 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38802 * 120.42758 * 2 1 4 4 C 1.39502 * 118.26362 * 179.97438 * 3 2 1 5 5 C 1.48444 * 120.54738 * 179.97438 * 4 3 2 6 6 O 1.21477 * 120.00404 * 22.35929 * 5 4 3 7 7 N 1.34780 * 119.99876 * 202.36060 * 5 4 3 8 8 C 1.46933 * 120.62760 * 356.55643 * 7 5 4 9 9 C 1.53189 * 108.77164 * 126.43643 * 8 7 5 10 10 C 1.53036 * 109.31612 * 54.63497 * 9 8 7 11 11 C 1.53039 * 109.53875 * 298.63398 * 10 9 8 12 12 C 1.46927 * 120.60635 * 176.58167 * 7 5 4 13 13 H 1.08997 * 109.56530 * 113.76722 * 12 7 5 14 14 C 1.53001 * 109.61575 * 353.33304 * 12 7 5 15 15 H 1.08996 * 109.87361 * 55.10884 * 14 12 7 16 16 C 1.54320 * 109.88484 * 294.08642 * 14 12 7 17 17 C 1.55399 * 102.83328 * 218.48134 * 16 14 12 18 18 C 1.54910 * 101.66444 * 35.33861 * 17 16 14 19 19 N 1.47022 * 109.88020 * 176.11851 * 14 12 7 20 20 C 1.36930 * 125.65256 * 298.32245 * 19 14 12 21 21 H 1.08004 * 119.99963 * 344.01000 * 20 19 14 22 22 C 1.38820 * 120.00371 * 164.00918 * 20 19 14 23 23 N 1.31619 * 119.99480 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00067 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47204 * 90.00281 * 24 22 20 26 26 H 1.48505 * 109.47198 * 210.00086 * 24 22 20 27 27 H 1.48503 * 109.47604 * 330.00115 * 24 22 20 28 28 N 1.33106 * 118.89707 * 0.25298 * 4 3 2 29 29 C 1.31549 * 120.73863 * 359.48209 * 28 4 3 30 30 N 1.31915 * 121.91975 * 0.53945 * 29 28 4 31 31 H 1.08998 * 109.46747 * 89.99915 * 1 2 3 32 32 H 1.08997 * 109.46962 * 209.99673 * 1 2 3 33 33 H 1.09001 * 109.46893 * 330.00216 * 1 2 3 34 34 H 1.07995 * 120.86906 * 359.97438 * 3 2 1 35 35 H 1.08990 * 109.58874 * 6.65137 * 8 7 5 36 36 H 1.08997 * 109.58425 * 246.22269 * 8 7 5 37 37 H 1.09003 * 109.49970 * 294.68487 * 9 8 7 38 38 H 1.09004 * 109.52623 * 174.60494 * 9 8 7 39 39 H 1.09000 * 109.46388 * 178.61246 * 10 9 8 40 40 H 1.08994 * 109.45017 * 58.64579 * 10 9 8 41 41 H 1.08996 * 109.50076 * 181.31560 * 11 10 9 42 42 H 1.09002 * 109.49581 * 301.38123 * 11 10 9 43 43 H 1.09001 * 110.71688 * 336.75583 * 16 14 12 44 44 H 1.09004 * 110.72139 * 100.02288 * 16 14 12 45 45 H 1.09002 * 110.89172 * 277.27312 * 17 16 14 46 46 H 1.08999 * 111.04199 * 153.47206 * 17 16 14 47 47 H 1.08999 * 110.37123 * 204.24231 * 18 17 16 48 48 H 1.08999 * 110.46557 * 81.95801 * 18 17 16 49 49 H 0.97001 * 119.99560 * 179.97438 * 23 22 20 50 50 H 1.08003 * 119.04341 * 180.28331 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6040 1.1442 0.0005 5 6 4.4062 2.3932 0.0000 6 8 3.9158 3.4303 0.3993 7 7 5.6788 2.3765 -0.4436 8 6 6.3104 1.1165 -0.8589 9 6 6.8703 1.2889 -2.2744 10 6 7.8049 2.5004 -2.3050 11 6 7.0196 3.7620 -1.9393 12 6 6.4606 3.6182 -0.5202 13 1 7.2831 3.5763 0.1938 14 6 5.5599 4.8129 -0.2002 15 1 5.0817 4.6674 0.7684 16 6 4.4863 4.9695 -1.2975 17 6 4.3800 6.5115 -1.4588 18 6 5.8480 6.9518 -1.2332 19 7 6.3559 6.0489 -0.1841 20 6 7.3960 6.3174 0.6650 21 1 7.5324 5.7233 1.5566 22 6 8.2751 7.3533 0.3800 23 7 8.1086 8.0775 -0.7063 24 14 9.6944 7.7191 1.5380 25 1 10.8834 6.9291 1.1288 26 1 10.0189 9.1671 1.4814 27 1 9.3094 7.3519 2.9245 28 7 4.2028 -0.0446 -0.0041 29 6 3.4955 -1.1537 0.0011 30 7 2.1764 -1.1398 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6913 2.1441 -0.0004 35 1 5.5693 0.3174 -0.8540 36 1 7.1207 0.8705 -0.1728 37 1 6.0492 1.4453 -2.9740 38 1 7.4248 0.3944 -2.5583 39 1 8.2239 2.6107 -3.3051 40 1 8.6120 2.3543 -1.5872 41 1 7.6804 4.6277 -1.9840 42 1 6.1974 3.8953 -2.6424 43 1 4.8153 4.5066 -2.2279 44 1 3.5361 4.5472 -0.9705 45 1 3.7234 6.9374 -0.7002 46 1 4.0419 6.7778 -2.4602 47 1 5.8857 7.9869 -0.8935 48 1 6.4268 6.8325 -2.1490 49 1 8.7227 8.8016 -0.9053 50 1 4.0097 -2.1035 0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025222194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:15 Heat of formation + Delta-G solvation = 69.003145 kcal Electronic energy + Delta-G solvation = -32246.956452 eV Core-core repulsion = 28276.132013 eV Total energy + Delta-G solvation = -3970.824439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.59849 -41.46216 -38.88353 -38.17964 -35.77128 -34.52437 -33.85527 -33.53624 -32.37954 -31.14479 -29.72119 -28.65387 -26.83405 -26.37245 -25.41311 -24.52674 -23.99134 -22.31623 -21.75336 -21.37476 -20.06532 -19.11333 -18.44695 -17.92167 -17.29180 -16.75074 -16.73831 -16.60131 -16.33545 -16.20649 -15.78142 -15.64404 -15.16921 -15.06689 -14.76243 -14.44132 -14.25005 -14.09675 -13.91272 -13.79651 -13.52161 -13.17832 -13.08812 -13.00904 -12.81387 -12.74964 -12.57358 -12.26322 -12.02503 -11.99259 -11.87903 -11.71741 -11.63669 -11.47612 -11.43341 -11.21513 -11.10635 -10.76775 -10.59718 -10.48150 -9.82939 -9.46296 -8.67380 -7.84030 -5.19897 -0.55205 -0.13974 1.43298 1.44300 1.53209 1.64322 1.80243 2.50398 2.65860 2.86040 3.06585 3.27262 3.36394 3.71193 3.77238 3.88751 3.91687 3.97257 4.01827 4.14537 4.20701 4.33053 4.33371 4.38628 4.44859 4.52538 4.62841 4.69475 4.76235 4.80014 4.84744 4.87515 4.92779 5.00703 5.04987 5.06104 5.16112 5.23742 5.24940 5.26027 5.30221 5.44495 5.48402 5.50228 5.63051 5.68279 5.78325 5.78976 5.85802 6.25331 6.44387 6.88894 7.07323 7.15612 7.83299 8.53122 9.27072 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.003478 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.779367 B = 8047.648925 C = 8654.507477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.183 3.817 3 C -0.178 4.178 4 C 0.130 3.870 5 C 0.546 3.454 6 O -0.530 6.530 7 N -0.576 5.576 8 C 0.066 3.934 9 C -0.122 4.122 10 C -0.118 4.118 11 C -0.111 4.111 12 C 0.145 3.855 13 H 0.045 0.955 14 C 0.159 3.841 15 H 0.055 0.945 16 C -0.110 4.110 17 C -0.138 4.138 18 C 0.185 3.815 19 N -0.611 5.611 20 C -0.233 4.233 21 H 0.065 0.935 22 C -0.056 4.056 23 N -0.943 5.943 24 Si 0.968 3.032 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.274 1.274 28 N -0.504 5.504 29 C 0.295 3.705 30 N -0.520 5.520 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.027 0.973 48 H -0.001 1.001 49 H 0.247 0.753 50 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 -21.925 -3.680 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.036 3.964 3 C -0.201 4.201 4 C -0.015 4.015 5 C 0.332 3.668 6 O -0.407 6.407 7 N -0.307 5.307 8 C -0.056 4.056 9 C -0.160 4.160 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.040 3.960 13 H 0.063 0.937 14 C 0.053 3.947 15 H 0.072 0.928 16 C -0.147 4.147 17 C -0.177 4.177 18 C 0.059 3.941 19 N -0.336 5.336 20 C -0.363 4.363 21 H 0.083 0.917 22 C -0.249 4.249 23 N -0.591 5.591 24 Si 0.797 3.203 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.200 1.200 28 N -0.222 5.222 29 C 0.008 3.992 30 N -0.235 5.235 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.045 0.955 48 H 0.017 0.983 49 H 0.056 0.944 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -12.495 -22.057 -3.437 25.582 hybrid contribution 1.204 1.795 0.625 2.250 sum -11.291 -20.262 -2.812 23.365 Atomic orbital electron populations 1.20957 0.84737 1.05434 1.05207 1.22357 0.99446 0.86943 0.87697 1.22916 0.93788 1.02391 1.00959 1.21576 0.92666 0.92127 0.95113 1.18287 0.81947 0.86980 0.79542 1.90784 1.71601 1.30730 1.47619 1.48166 1.11311 1.09619 1.61639 1.23192 1.00700 0.86548 0.95128 1.21891 0.99025 0.98499 0.96627 1.21547 0.98040 0.94322 1.01632 1.21742 0.99497 0.98240 0.95436 1.21740 0.93728 0.83613 0.96891 0.93716 1.21723 0.89741 0.84488 0.98700 0.92805 1.22961 0.99242 0.95439 0.97035 1.22944 0.97247 0.96667 1.00812 1.21103 0.89673 0.93348 0.89930 1.44879 1.36547 1.13753 1.38418 1.19166 1.02354 1.13883 1.00858 0.91685 1.25608 1.00776 0.99570 0.98990 1.70141 1.38970 1.22592 1.27443 0.85235 0.79825 0.76626 0.78619 1.21101 1.21952 1.19963 1.68187 1.40221 0.98777 1.15055 1.25839 0.86804 0.97542 0.89008 1.68339 1.10764 1.30517 1.13929 0.87818 0.88935 0.88441 0.81936 0.82571 0.91779 0.92107 0.88181 0.91111 0.92604 0.93738 0.91799 0.91926 0.89117 0.92642 0.90315 0.95484 0.98320 0.94416 0.74671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.22 71.24 0.73 -0.21 16 2 C 0.18 2.97 6.83 42.64 0.29 3.26 16 3 C -0.18 -3.62 9.41 22.71 0.21 -3.40 16 4 C 0.13 3.23 6.52 41.98 0.27 3.51 16 5 C 0.55 17.51 6.97 86.96 0.61 18.12 16 6 O -0.53 -19.99 9.80 -3.64 -0.04 -20.03 16 7 N -0.58 -18.53 2.94 -797.73 -2.35 -20.88 16 8 C 0.07 1.62 6.10 86.36 0.53 2.14 16 9 C -0.12 -2.72 6.08 30.67 0.19 -2.53 16 10 C -0.12 -3.36 5.88 30.62 0.18 -3.18 16 11 C -0.11 -4.17 4.96 30.67 0.15 -4.01 16 12 C 0.15 5.81 2.69 44.98 0.12 5.93 16 13 H 0.04 2.04 7.88 -2.39 -0.02 2.02 16 14 C 0.16 7.25 2.28 45.34 0.10 7.35 16 15 H 0.05 2.74 5.75 -18.49 -0.11 2.63 16 16 C -0.11 -4.32 5.05 31.87 0.16 -4.16 16 17 C -0.14 -5.75 7.09 32.07 0.23 -5.52 16 18 C 0.18 9.67 5.40 86.85 0.47 10.14 16 19 N -0.61 -32.94 2.70 -668.24 -1.81 -34.75 16 20 C -0.23 -13.61 9.73 84.04 0.82 -12.79 16 21 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.06 -3.25 5.47 84.86 0.46 -2.79 16 23 N -0.94 -57.83 10.63 21.65 0.23 -57.60 16 24 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 25 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 28 N -0.50 -10.43 6.48 -189.17 -1.23 -11.65 16 29 C 0.29 4.59 12.27 180.92 2.22 6.82 16 30 N -0.52 -8.80 10.36 -188.10 -1.95 -10.75 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.64 8.10 -2.39 -0.02 0.62 16 34 H 0.16 3.10 7.89 -2.91 -0.02 3.08 16 35 H 0.16 3.36 3.83 -62.94 -0.24 3.12 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.64 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 2.07 7.93 -2.39 -0.02 2.05 16 42 H 0.06 2.34 5.59 -2.39 -0.01 2.33 16 43 H 0.06 2.35 5.30 -2.39 -0.01 2.34 16 44 H 0.09 3.42 5.69 -2.56 -0.01 3.40 16 45 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.03 1.58 7.03 -2.39 -0.02 1.56 16 48 H 0.00 -0.07 8.03 -2.39 -0.02 -0.09 16 49 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 50 H 0.24 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -72.80 377.23 3.26 -69.54 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.62 Total: 18.16 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 7.74 Total: 18.67 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -7.10 Total: -135.62 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.04 Total: -20.03 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -72.80 3.26 -69.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025222194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.541 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds