Wall clock time and date at job start Wed Apr 1 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38808 * 120.42721 * 2 1 4 4 C 1.39493 * 118.26036 * 179.97438 * 3 2 1 5 5 C 1.48464 * 120.54728 * 179.97438 * 4 3 2 6 6 O 1.21481 * 119.99582 * 352.42562 * 5 4 3 7 7 N 1.34780 * 119.99832 * 172.42379 * 5 4 3 8 8 C 1.46921 * 120.63094 * 351.77470 * 7 5 4 9 9 C 1.53192 * 108.89381 * 233.56216 * 8 7 5 10 10 C 1.53081 * 109.29189 * 305.57807 * 9 8 7 11 11 C 1.53044 * 109.65498 * 61.15438 * 10 9 8 12 12 C 1.46923 * 120.62403 * 171.79895 * 7 5 4 13 13 H 1.09004 * 109.58432 * 246.29497 * 12 7 5 14 14 C 1.52992 * 109.59407 * 6.58122 * 12 7 5 15 15 H 1.09000 * 109.87341 * 308.71808 * 14 12 7 16 16 C 1.54332 * 109.87941 * 69.72718 * 14 12 7 17 17 C 1.55402 * 102.82657 * 141.52274 * 16 14 12 18 18 C 1.54912 * 101.66325 * 324.66262 * 17 16 14 19 19 N 1.47015 * 109.88711 * 187.69391 * 14 12 7 20 20 C 1.36942 * 125.64640 * 61.60920 * 19 14 12 21 21 H 1.08009 * 119.99765 * 331.48110 * 20 19 14 22 22 C 1.38810 * 120.00169 * 151.48422 * 20 19 14 23 23 N 1.31617 * 119.99732 * 163.98828 * 22 20 19 24 24 Si 1.86799 * 120.00083 * 343.99318 * 22 20 19 25 25 H 1.48507 * 109.46848 * 85.05362 * 24 22 20 26 26 H 1.48496 * 109.46966 * 205.05538 * 24 22 20 27 27 H 1.48494 * 109.46940 * 325.05762 * 24 22 20 28 28 N 1.33099 * 118.90451 * 0.24967 * 4 3 2 29 29 C 1.31551 * 120.73695 * 359.48737 * 28 4 3 30 30 N 1.31911 * 121.91612 * 0.52766 * 29 28 4 31 31 H 1.09000 * 109.46732 * 90.00495 * 1 2 3 32 32 H 1.08997 * 109.47463 * 210.00284 * 1 2 3 33 33 H 1.09004 * 109.47292 * 330.00868 * 1 2 3 34 34 H 1.07995 * 120.86711 * 359.95326 * 3 2 1 35 35 H 1.09005 * 109.58942 * 353.42196 * 8 7 5 36 36 H 1.08994 * 109.58389 * 113.70102 * 8 7 5 37 37 H 1.08992 * 109.49780 * 65.38835 * 9 8 7 38 38 H 1.08995 * 109.49826 * 185.49115 * 9 8 7 39 39 H 1.08994 * 109.34486 * 301.13017 * 10 9 8 40 40 H 1.08994 * 109.43813 * 181.23797 * 10 9 8 41 41 H 1.09005 * 109.49301 * 178.74935 * 11 10 9 42 42 H 1.09003 * 109.52608 * 58.66873 * 11 10 9 43 43 H 1.09000 * 110.71958 * 259.97427 * 16 14 12 44 44 H 1.08986 * 110.72039 * 23.24992 * 16 14 12 45 45 H 1.08994 * 111.03968 * 206.52890 * 17 16 14 46 46 H 1.09001 * 110.92286 * 82.74561 * 17 16 14 47 47 H 1.09002 * 110.36433 * 278.07979 * 18 17 16 48 48 H 1.09003 * 110.36448 * 155.77079 * 18 17 16 49 49 H 0.97005 * 119.99848 * 179.97438 * 23 22 20 50 50 H 1.08007 * 119.04568 * 180.23965 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 0.0005 5 6 4.4063 2.3933 0.0000 6 8 3.8571 3.4678 -0.1396 7 7 5.7440 2.3351 0.1544 8 6 6.4029 1.0689 0.5028 9 6 7.2697 1.2867 1.7469 10 6 8.2314 2.4509 1.4958 11 6 7.4335 3.7294 1.2293 12 6 6.5707 3.5367 -0.0219 13 1 7.2117 3.4143 -0.8950 14 6 5.6681 4.7567 -0.2153 15 1 4.9383 4.5570 -1.0000 16 6 4.9413 5.0865 1.1056 17 6 4.9479 6.6404 1.1244 18 6 6.3161 6.9557 0.4698 19 7 6.4806 5.9281 -0.5744 20 6 7.2616 6.0451 -1.6931 21 1 7.6931 5.1640 -2.1451 22 6 7.4989 7.2959 -2.2464 23 7 8.4797 7.4586 -3.1088 24 14 6.4262 8.7480 -1.7667 25 1 6.9499 9.3593 -0.5187 26 1 6.4423 9.7565 -2.8565 27 1 5.0339 8.2825 -1.5434 28 7 4.2028 -0.0445 -0.0040 29 6 3.4955 -1.1537 0.0011 30 7 2.1764 -1.1397 0.0006 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8901 0.5137 34 1 1.6913 2.1441 -0.0008 35 1 5.6489 0.3098 0.7111 36 1 7.0299 0.7430 -0.3270 37 1 6.6314 1.5218 2.5985 38 1 7.8385 0.3810 1.9571 39 1 8.8542 2.2245 0.6304 40 1 8.8645 2.5938 2.3714 41 1 8.1206 4.5611 1.0728 42 1 6.7920 3.9434 2.0842 43 1 3.9211 4.7030 1.0906 44 1 5.4914 4.6887 1.9582 45 1 4.9067 7.0196 2.1454 46 1 4.1280 7.0404 0.5279 47 1 7.1157 6.8794 1.2066 48 1 6.3033 7.9505 0.0244 49 1 8.6453 8.3326 -3.4957 50 1 4.0097 -2.1035 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025222196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:20 Heat of formation + Delta-G solvation = 101.444402 kcal Electronic energy + Delta-G solvation = -32226.306854 eV Core-core repulsion = 28256.889174 eV Total energy + Delta-G solvation = -3969.417680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.64982 -40.32780 -37.56846 -36.94159 -34.94612 -33.03053 -32.50603 -32.40605 -31.19600 -29.82121 -29.04961 -27.54083 -25.68609 -24.47706 -24.20349 -23.65543 -22.74147 -21.15242 -20.73927 -19.88371 -18.81186 -17.75518 -17.02448 -16.77956 -16.08158 -15.88908 -15.74456 -15.44171 -15.35743 -14.88023 -14.70646 -14.20143 -13.90395 -13.68183 -13.57532 -13.33940 -13.16125 -13.11417 -12.87875 -12.72202 -12.57806 -12.18712 -11.92962 -11.44335 -11.35135 -11.27243 -11.15343 -10.97262 -10.88540 -10.63430 -10.52583 -10.44520 -10.37184 -9.95085 -9.88409 -9.64866 -9.59479 -9.56938 -9.13133 -8.74039 -8.43399 -8.11533 -6.79640 -5.87945 -3.24227 0.31858 0.59479 2.73549 2.96518 3.37674 3.52935 3.56734 3.59536 3.67709 3.72001 4.14988 4.58352 4.60987 4.67270 4.95006 5.03819 5.08770 5.14894 5.16284 5.18681 5.22562 5.35937 5.39750 5.44434 5.50357 5.62416 5.63438 5.69889 5.78064 5.86061 5.87194 5.97953 6.02867 6.15291 6.19342 6.28081 6.33826 6.35463 6.44809 6.52201 6.55178 6.59147 6.69264 6.71370 6.90291 6.98875 7.01694 7.36382 7.57322 7.69140 7.93161 8.29415 8.44232 8.95306 9.77313 10.33800 11.28996 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.003725 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.586518 B = 7515.798803 C = 8436.533352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.172 4.172 4 C 0.145 3.855 5 C 0.546 3.454 6 O -0.496 6.496 7 N -0.574 5.574 8 C 0.072 3.928 9 C -0.132 4.132 10 C -0.122 4.122 11 C -0.126 4.126 12 C 0.134 3.866 13 H 0.081 0.919 14 C 0.164 3.836 15 H 0.079 0.921 16 C -0.126 4.126 17 C -0.138 4.138 18 C 0.114 3.886 19 N -0.605 5.605 20 C -0.237 4.237 21 H 0.086 0.914 22 C 0.023 3.977 23 N -0.915 5.915 24 Si 0.899 3.101 25 H -0.287 1.287 26 H -0.309 1.309 27 H -0.274 1.274 28 N -0.494 5.494 29 C 0.291 3.709 30 N -0.514 5.514 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.027 0.973 48 H 0.040 0.960 49 H 0.262 0.738 50 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 -17.744 11.246 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.195 4.195 4 C -0.001 4.001 5 C 0.331 3.669 6 O -0.372 6.372 7 N -0.306 5.306 8 C -0.051 4.051 9 C -0.170 4.170 10 C -0.160 4.160 11 C -0.164 4.164 12 C 0.031 3.969 13 H 0.099 0.901 14 C 0.057 3.943 15 H 0.096 0.904 16 C -0.163 4.163 17 C -0.177 4.177 18 C -0.010 4.010 19 N -0.331 5.331 20 C -0.365 4.365 21 H 0.103 0.897 22 C -0.175 4.175 23 N -0.558 5.558 24 Si 0.733 3.267 25 H -0.216 1.216 26 H -0.237 1.237 27 H -0.200 1.200 28 N -0.211 5.211 29 C 0.003 3.997 30 N -0.230 5.230 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -11.239 -17.867 10.945 23.777 hybrid contribution -0.478 1.584 0.155 1.661 sum -11.717 -16.283 11.100 22.927 Atomic orbital electron populations 1.20822 0.87300 1.04325 1.04037 1.21845 0.97896 0.87811 0.89485 1.22815 0.94660 1.01385 1.00659 1.22072 0.92305 0.92828 0.92930 1.17872 0.82533 0.86430 0.80018 1.90821 1.71514 1.26360 1.48467 1.48022 1.05041 1.11330 1.66183 1.22925 0.98825 0.86830 0.96541 1.21938 0.98205 0.98752 0.98154 1.21574 0.97743 0.95249 1.01399 1.22008 0.98811 0.97721 0.97875 1.22092 0.92767 0.84314 0.97771 0.90139 1.21598 0.90046 0.85948 0.96662 0.90354 1.23215 1.01603 0.94586 0.96943 1.22832 0.98442 0.97101 0.99275 1.21980 0.94217 0.93609 0.91214 1.44898 1.53145 1.13534 1.21563 1.18580 1.21522 0.94742 1.01646 0.89653 1.25173 0.97760 0.97834 0.96763 1.69778 1.29578 1.23587 1.32907 0.86675 0.82493 0.82348 0.75166 1.21570 1.23747 1.20033 1.68434 1.39531 0.98871 1.14284 1.25142 0.86744 0.97173 0.90605 1.68202 1.10502 1.30480 1.13782 0.89337 0.89730 0.89745 0.82199 0.84198 0.91881 0.92325 0.91308 0.91941 0.92389 0.89781 0.91536 0.88963 0.92181 0.92323 0.91918 0.95483 0.94256 0.92820 0.78223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.22 36.01 0.37 -0.27 16 2 C 0.18 1.66 6.83 -82.23 -0.56 1.10 16 3 C -0.17 -1.88 9.41 -38.90 -0.37 -2.24 16 4 C 0.15 1.85 6.62 -82.64 -0.55 1.31 16 5 C 0.55 8.51 7.31 -12.04 -0.09 8.42 16 6 O -0.50 -8.83 9.24 5.38 0.05 -8.78 16 7 N -0.57 -8.86 2.96 -166.10 -0.49 -9.35 16 8 C 0.07 0.89 5.91 -3.71 -0.02 0.87 16 9 C -0.13 -1.51 6.09 -26.59 -0.16 -1.67 16 10 C -0.12 -1.62 5.88 -26.67 -0.16 -1.78 16 11 C -0.13 -2.07 4.96 -26.61 -0.13 -2.20 16 12 C 0.13 2.46 2.72 -67.60 -0.18 2.27 16 13 H 0.08 1.68 7.33 -51.93 -0.38 1.30 16 14 C 0.16 3.44 2.28 -66.96 -0.15 3.29 16 15 H 0.08 1.86 5.84 -51.80 -0.30 1.56 16 16 C -0.13 -2.32 5.21 -24.76 -0.13 -2.45 16 17 C -0.14 -2.66 7.09 -24.45 -0.17 -2.83 16 18 C 0.11 2.61 6.21 -2.53 -0.02 2.59 16 19 N -0.61 -14.92 2.56 -162.58 -0.42 -15.34 16 20 C -0.24 -6.78 10.18 -15.06 -0.15 -6.94 16 21 H 0.09 2.59 7.45 -52.48 -0.39 2.19 16 22 C 0.02 0.70 5.47 -17.43 -0.10 0.60 16 23 N -0.91 -28.66 13.97 55.49 0.78 -27.89 16 24 Si 0.90 23.81 24.70 -169.99 -4.20 19.61 16 25 H -0.29 -7.35 6.59 56.52 0.37 -6.98 16 26 H -0.31 -8.25 7.11 56.52 0.40 -7.85 16 27 H -0.27 -7.23 7.10 56.52 0.40 -6.83 16 28 N -0.49 -5.53 6.29 -11.14 -0.07 -5.60 16 29 C 0.29 2.69 12.27 -92.26 -1.13 1.56 16 30 N -0.51 -5.11 10.36 -10.80 -0.11 -5.23 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 34 H 0.16 1.61 7.75 -52.49 -0.41 1.20 16 35 H 0.14 1.60 4.02 -82.08 -0.33 1.27 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 42 H 0.07 1.06 5.45 -51.93 -0.28 0.78 16 43 H 0.09 1.68 5.53 -52.14 -0.29 1.39 16 44 H 0.06 1.03 5.07 -51.94 -0.26 0.77 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.04 0.98 2.15 -51.93 -0.11 0.87 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 50 H 0.20 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -33.18 370.05 -10.00 -43.18 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.41 Total: 2.19 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.70 Total: 1.63 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.31 Total: -63.41 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.05 Total: -8.78 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.20 Total: 19.61 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.18 -10.00 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025222196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.622 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds