Wall clock time and date at job start Wed Apr 1 2020 03:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38808 * 120.42721 * 2 1 4 4 C 1.39493 * 118.26036 * 179.97438 * 3 2 1 5 5 C 1.48464 * 120.54728 * 179.97438 * 4 3 2 6 6 O 1.21481 * 119.99582 * 352.42562 * 5 4 3 7 7 N 1.34780 * 119.99832 * 172.42379 * 5 4 3 8 8 C 1.46921 * 120.63094 * 351.77470 * 7 5 4 9 9 C 1.53192 * 108.89381 * 233.56216 * 8 7 5 10 10 C 1.53081 * 109.29189 * 305.57807 * 9 8 7 11 11 C 1.53044 * 109.65498 * 61.15438 * 10 9 8 12 12 C 1.46923 * 120.62403 * 171.79895 * 7 5 4 13 13 H 1.09004 * 109.58432 * 246.29497 * 12 7 5 14 14 C 1.52992 * 109.59407 * 6.58122 * 12 7 5 15 15 H 1.09000 * 109.87341 * 308.71808 * 14 12 7 16 16 C 1.54332 * 109.87941 * 69.72718 * 14 12 7 17 17 C 1.55402 * 102.82657 * 141.52274 * 16 14 12 18 18 C 1.54912 * 101.66325 * 324.66262 * 17 16 14 19 19 N 1.47015 * 109.88711 * 187.69391 * 14 12 7 20 20 C 1.36942 * 125.64640 * 61.60920 * 19 14 12 21 21 H 1.08009 * 119.99765 * 331.48110 * 20 19 14 22 22 C 1.38810 * 120.00169 * 151.48422 * 20 19 14 23 23 N 1.31617 * 119.99732 * 163.98828 * 22 20 19 24 24 Si 1.86799 * 120.00083 * 343.99318 * 22 20 19 25 25 H 1.48507 * 109.46848 * 85.05362 * 24 22 20 26 26 H 1.48496 * 109.46966 * 205.05538 * 24 22 20 27 27 H 1.48494 * 109.46940 * 325.05762 * 24 22 20 28 28 N 1.33099 * 118.90451 * 0.24967 * 4 3 2 29 29 C 1.31551 * 120.73695 * 359.48737 * 28 4 3 30 30 N 1.31911 * 121.91612 * 0.52766 * 29 28 4 31 31 H 1.09000 * 109.46732 * 90.00495 * 1 2 3 32 32 H 1.08997 * 109.47463 * 210.00284 * 1 2 3 33 33 H 1.09004 * 109.47292 * 330.00868 * 1 2 3 34 34 H 1.07995 * 120.86711 * 359.95326 * 3 2 1 35 35 H 1.09005 * 109.58942 * 353.42196 * 8 7 5 36 36 H 1.08994 * 109.58389 * 113.70102 * 8 7 5 37 37 H 1.08992 * 109.49780 * 65.38835 * 9 8 7 38 38 H 1.08995 * 109.49826 * 185.49115 * 9 8 7 39 39 H 1.08994 * 109.34486 * 301.13017 * 10 9 8 40 40 H 1.08994 * 109.43813 * 181.23797 * 10 9 8 41 41 H 1.09005 * 109.49301 * 178.74935 * 11 10 9 42 42 H 1.09003 * 109.52608 * 58.66873 * 11 10 9 43 43 H 1.09000 * 110.71958 * 259.97427 * 16 14 12 44 44 H 1.08986 * 110.72039 * 23.24992 * 16 14 12 45 45 H 1.08994 * 111.03968 * 206.52890 * 17 16 14 46 46 H 1.09001 * 110.92286 * 82.74561 * 17 16 14 47 47 H 1.09002 * 110.36433 * 278.07979 * 18 17 16 48 48 H 1.09003 * 110.36448 * 155.77079 * 18 17 16 49 49 H 0.97005 * 119.99848 * 179.97438 * 23 22 20 50 50 H 1.08007 * 119.04568 * 180.23965 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 0.0005 5 6 4.4063 2.3933 0.0000 6 8 3.8571 3.4678 -0.1396 7 7 5.7440 2.3351 0.1544 8 6 6.4029 1.0689 0.5028 9 6 7.2697 1.2867 1.7469 10 6 8.2314 2.4509 1.4958 11 6 7.4335 3.7294 1.2293 12 6 6.5707 3.5367 -0.0219 13 1 7.2117 3.4143 -0.8950 14 6 5.6681 4.7567 -0.2153 15 1 4.9383 4.5570 -1.0000 16 6 4.9413 5.0865 1.1056 17 6 4.9479 6.6404 1.1244 18 6 6.3161 6.9557 0.4698 19 7 6.4806 5.9281 -0.5744 20 6 7.2616 6.0451 -1.6931 21 1 7.6931 5.1640 -2.1451 22 6 7.4989 7.2959 -2.2464 23 7 8.4797 7.4586 -3.1088 24 14 6.4262 8.7480 -1.7667 25 1 6.9499 9.3593 -0.5187 26 1 6.4423 9.7565 -2.8565 27 1 5.0339 8.2825 -1.5434 28 7 4.2028 -0.0445 -0.0040 29 6 3.4955 -1.1537 0.0011 30 7 2.1764 -1.1397 0.0006 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8901 0.5137 34 1 1.6913 2.1441 -0.0008 35 1 5.6489 0.3098 0.7111 36 1 7.0299 0.7430 -0.3270 37 1 6.6314 1.5218 2.5985 38 1 7.8385 0.3810 1.9571 39 1 8.8542 2.2245 0.6304 40 1 8.8645 2.5938 2.3714 41 1 8.1206 4.5611 1.0728 42 1 6.7920 3.9434 2.0842 43 1 3.9211 4.7030 1.0906 44 1 5.4914 4.6887 1.9582 45 1 4.9067 7.0196 2.1454 46 1 4.1280 7.0404 0.5279 47 1 7.1157 6.8794 1.2066 48 1 6.3033 7.9505 0.0244 49 1 8.6453 8.3326 -3.4957 50 1 4.0097 -2.1035 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025222196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:18 Heat of formation + Delta-G solvation = 81.500714 kcal Electronic energy + Delta-G solvation = -32227.171677 eV Core-core repulsion = 28256.889174 eV Total energy + Delta-G solvation = -3970.282503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.60789 -41.51885 -39.08570 -38.25329 -35.80219 -34.62937 -33.87012 -33.57552 -32.52542 -31.79521 -29.75484 -28.91499 -26.84080 -26.26152 -25.41078 -24.54870 -24.08342 -22.68742 -21.93722 -21.40725 -20.01582 -19.19501 -18.42522 -17.92625 -17.90952 -16.92208 -16.80046 -16.70687 -16.52442 -16.23806 -15.80961 -15.38989 -15.22604 -15.16250 -14.97116 -14.63787 -14.49087 -14.15928 -14.09551 -13.96363 -13.81145 -13.26714 -13.19067 -13.14067 -12.99790 -12.77390 -12.59761 -12.41767 -12.23223 -11.90478 -11.82932 -11.71234 -11.58328 -11.51054 -11.43841 -11.23570 -11.07707 -10.71343 -10.62815 -10.49462 -9.80972 -9.45363 -8.84464 -8.19163 -5.51262 -0.59159 -0.14711 1.23747 1.35328 1.47287 1.64534 1.80023 2.38938 2.69424 2.81347 3.05006 3.07235 3.26605 3.44030 3.70727 3.82613 3.86590 3.95895 3.96981 4.05637 4.11683 4.18283 4.28297 4.35123 4.42076 4.42454 4.52998 4.63546 4.68078 4.74414 4.79106 4.81919 4.83712 4.90906 4.97471 5.00746 5.06450 5.13003 5.17810 5.19364 5.25156 5.27834 5.35638 5.44674 5.50536 5.62386 5.75748 5.78951 5.82614 6.12733 6.40689 6.79719 6.88746 7.10198 7.55505 8.18554 9.01958 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.003725 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.586518 B = 7515.798803 C = 8436.533352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.182 3.818 3 C -0.176 4.176 4 C 0.128 3.872 5 C 0.542 3.458 6 O -0.526 6.526 7 N -0.576 5.576 8 C 0.069 3.931 9 C -0.123 4.123 10 C -0.119 4.119 11 C -0.117 4.117 12 C 0.143 3.857 13 H 0.039 0.961 14 C 0.162 3.838 15 H 0.048 0.952 16 C -0.110 4.110 17 C -0.130 4.130 18 C 0.105 3.895 19 N -0.620 5.620 20 C -0.223 4.223 21 H 0.050 0.950 22 C -0.035 4.035 23 N -0.960 5.960 24 Si 0.962 3.038 25 H -0.271 1.271 26 H -0.313 1.313 27 H -0.274 1.274 28 N -0.503 5.503 29 C 0.294 3.706 30 N -0.520 5.520 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.023 0.977 49 H 0.262 0.738 50 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 -19.718 14.156 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.034 3.966 3 C -0.199 4.199 4 C -0.018 4.018 5 C 0.329 3.671 6 O -0.403 6.403 7 N -0.307 5.307 8 C -0.053 4.053 9 C -0.161 4.161 10 C -0.157 4.157 11 C -0.155 4.155 12 C 0.039 3.961 13 H 0.057 0.943 14 C 0.056 3.944 15 H 0.065 0.935 16 C -0.147 4.147 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.347 5.347 20 C -0.352 4.352 21 H 0.068 0.932 22 C -0.229 4.229 23 N -0.607 5.607 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.242 1.242 27 H -0.200 1.200 28 N -0.221 5.221 29 C 0.007 3.993 30 N -0.236 5.236 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.041 0.959 49 H 0.071 0.929 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.385 -19.888 13.898 27.709 hybrid contribution 0.148 1.997 -0.802 2.157 sum -13.236 -17.891 13.096 25.822 Atomic orbital electron populations 1.20955 0.84770 1.05579 1.05030 1.22368 0.99451 0.86983 0.87751 1.22930 0.93908 1.02352 1.00701 1.21629 0.92659 0.92217 0.95249 1.18306 0.82505 0.87374 0.78913 1.90777 1.72044 1.27840 1.49670 1.48061 1.05133 1.11249 1.66290 1.23181 0.99387 0.85705 0.96993 1.21909 0.97725 0.98984 0.97473 1.21557 0.97931 0.94434 1.01731 1.21885 0.98282 0.98482 0.96863 1.21609 0.92399 0.84767 0.97374 0.94252 1.21660 0.89651 0.85646 0.97397 0.93467 1.23110 1.01854 0.94194 0.95543 1.22825 0.95587 0.97459 1.00901 1.22142 0.96844 0.92052 0.90836 1.45004 1.53099 1.15464 1.21103 1.18456 1.20824 0.93533 1.02428 0.93209 1.25791 0.99038 1.00563 0.97550 1.69906 1.31474 1.24225 1.35090 0.85639 0.80574 0.79134 0.75196 1.19834 1.24206 1.19965 1.68286 1.39963 0.98820 1.15051 1.25856 0.86792 0.97642 0.88974 1.68332 1.10818 1.30563 1.13870 0.88262 0.88781 0.88210 0.81860 0.82499 0.92486 0.91646 0.88303 0.93093 0.90479 0.92916 0.90427 0.88205 0.90465 0.88398 0.92742 0.94582 0.95946 0.92933 0.74716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.22 71.24 0.73 -0.22 16 2 C 0.18 2.97 6.83 42.64 0.29 3.26 16 3 C -0.18 -3.57 9.41 22.71 0.21 -3.35 16 4 C 0.13 3.13 6.62 41.98 0.28 3.41 16 5 C 0.54 16.90 7.31 86.97 0.64 17.53 16 6 O -0.53 -18.95 9.24 -3.65 -0.03 -18.99 16 7 N -0.58 -17.87 2.96 -797.73 -2.36 -20.23 16 8 C 0.07 1.63 5.91 86.36 0.51 2.14 16 9 C -0.12 -2.48 6.09 30.69 0.19 -2.30 16 10 C -0.12 -3.03 5.88 30.64 0.18 -2.85 16 11 C -0.12 -3.84 4.96 30.67 0.15 -3.69 16 12 C 0.14 5.46 2.72 44.97 0.12 5.58 16 13 H 0.04 1.80 7.33 -2.38 -0.02 1.78 16 14 C 0.16 7.00 2.28 45.34 0.10 7.10 16 15 H 0.05 2.37 5.84 -10.12 -0.06 2.31 16 16 C -0.11 -3.91 5.21 31.87 0.17 -3.74 16 17 C -0.13 -4.73 7.09 32.07 0.23 -4.50 16 18 C 0.11 4.74 6.21 86.86 0.54 5.28 16 19 N -0.62 -31.53 2.56 -668.27 -1.71 -33.24 16 20 C -0.22 -13.46 10.18 84.03 0.86 -12.61 16 21 H 0.05 3.28 7.45 -2.91 -0.02 3.26 16 22 C -0.03 -2.16 5.47 84.86 0.46 -1.69 16 23 N -0.96 -62.85 13.97 21.65 0.30 -62.55 16 24 Si 0.96 50.61 24.70 68.60 1.69 52.30 16 25 H -0.27 -13.38 6.59 99.48 0.66 -12.72 16 26 H -0.31 -16.48 7.11 99.48 0.71 -15.78 16 27 H -0.27 -14.18 7.10 99.48 0.71 -13.48 16 28 N -0.50 -10.33 6.29 -189.16 -1.19 -11.52 16 29 C 0.29 4.61 12.27 180.92 2.22 6.83 16 30 N -0.52 -8.88 10.36 -188.10 -1.95 -10.83 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.61 8.10 -2.39 -0.02 0.59 16 34 H 0.16 3.11 7.75 -2.91 -0.02 3.09 16 35 H 0.16 3.27 4.02 -61.92 -0.25 3.02 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 2.05 8.03 -2.38 -0.02 2.03 16 42 H 0.08 2.36 5.45 -2.39 -0.01 2.34 16 43 H 0.10 3.50 5.53 -15.46 -0.09 3.41 16 44 H 0.08 2.47 5.07 -2.39 -0.01 2.46 16 45 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.02 1.11 2.15 -2.39 -0.01 1.11 16 49 H 0.26 16.27 8.31 -92.70 -0.77 15.50 16 50 H 0.24 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -76.43 370.05 3.19 -73.24 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.56 Total: 15.63 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 7.88 Total: 16.19 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -6.91 Total: -138.37 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.03 Total: -18.99 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.69 Total: 52.30 kcal Total: -76.43 3.19 -73.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025222196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.739 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds