Wall clock time and date at job start Wed Apr 1 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38829 * 120.41611 * 2 1 4 4 C 1.38772 * 118.51003 * 179.97438 * 3 2 1 5 5 N 1.32127 * 119.16484 * 0.02562 * 4 3 2 6 6 C 1.32452 * 120.76834 * 359.97438 * 5 4 3 7 7 C 1.48537 * 119.18486 * 180.02562 * 6 5 4 8 8 O 1.21469 * 119.99544 * 215.39840 * 7 6 5 9 9 N 1.34768 * 120.00018 * 35.39581 * 7 6 5 10 10 C 1.46924 * 120.63260 * 11.21817 * 9 7 6 11 11 C 1.53193 * 108.77620 * 126.39310 * 10 9 7 12 12 C 1.53035 * 109.31709 * 54.63332 * 11 10 9 13 13 C 1.53044 * 109.53648 * 298.63986 * 12 11 10 14 14 C 1.46929 * 120.62847 * 191.21645 * 9 7 6 15 15 H 1.09003 * 109.70162 * 113.75509 * 14 9 7 16 16 C 1.53000 * 109.58785 * 353.39673 * 14 9 7 17 17 H 1.08999 * 109.87220 * 313.13609 * 16 14 9 18 18 C 1.54322 * 109.88115 * 74.31003 * 16 14 9 19 19 C 1.55158 * 102.94178 * 141.61092 * 18 16 14 20 20 C 1.55119 * 101.48447 * 324.32994 * 19 18 16 21 21 N 1.47017 * 109.88284 * 192.11717 * 16 14 9 22 22 C 1.36941 * 125.65095 * 61.60436 * 21 16 14 23 23 H 1.08004 * 119.99583 * 333.56515 * 22 21 16 24 24 C 1.38810 * 120.00029 * 153.56610 * 22 21 16 25 25 N 1.31615 * 119.99736 * 176.43474 * 24 22 21 26 26 Si 1.86803 * 120.00083 * 356.42739 * 24 22 21 27 27 H 1.48505 * 109.46782 * 83.30984 * 26 24 22 28 28 H 1.48497 * 109.47139 * 323.31319 * 26 24 22 29 29 H 1.48498 * 109.47139 * 203.30725 * 26 24 22 30 30 N 1.32088 * 120.42280 * 180.27396 * 2 1 3 31 31 H 1.09001 * 109.46966 * 90.00391 * 1 2 3 32 32 H 1.09007 * 109.46837 * 209.99378 * 1 2 3 33 33 H 1.08997 * 109.47220 * 329.99878 * 1 2 3 34 34 H 1.08011 * 120.74361 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.42013 * 179.97438 * 4 3 2 36 36 H 1.08998 * 109.58703 * 6.60100 * 10 9 7 37 37 H 1.09005 * 109.70362 * 246.24438 * 10 9 7 38 38 H 1.09007 * 109.49364 * 294.68200 * 11 10 9 39 39 H 1.09004 * 109.52503 * 174.60622 * 11 10 9 40 40 H 1.08997 * 109.46564 * 178.61755 * 12 11 10 41 41 H 1.09000 * 109.44663 * 58.64692 * 12 11 10 42 42 H 1.09000 * 109.49774 * 301.40795 * 13 12 11 43 43 H 1.09000 * 109.52079 * 181.33067 * 13 12 11 44 44 H 1.09010 * 110.71628 * 259.97565 * 18 16 14 45 45 H 1.09000 * 110.71973 * 23.24109 * 18 16 14 46 46 H 1.08997 * 111.00266 * 82.57767 * 19 18 16 47 47 H 1.09004 * 110.99891 * 206.41926 * 19 18 16 48 48 H 1.09004 * 110.50021 * 278.45501 * 20 19 18 49 49 H 1.09001 * 110.34562 * 156.06049 * 20 19 18 50 50 H 0.97006 * 120.00000 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5968 1.1511 0.0005 5 7 4.2020 -0.0235 0.0005 6 6 3.5006 -1.1471 0.0005 7 6 4.2171 -2.4482 0.0011 8 8 3.7592 -3.3939 -0.6083 9 7 5.3753 -2.5793 0.6776 10 6 5.8184 -1.5363 1.6127 11 6 6.1053 -2.1821 2.9718 12 6 7.1044 -3.3266 2.7877 13 6 6.5014 -4.3889 1.8657 14 6 6.2190 -3.7682 0.4940 15 1 7.1589 -3.4824 0.0218 16 6 5.4896 -4.7835 -0.3881 17 1 4.4623 -4.9030 -0.0438 18 6 5.5025 -4.3081 -1.8562 19 6 5.7088 -5.6271 -2.6468 20 6 6.6552 -6.4102 -1.6996 21 7 6.1862 -6.0773 -0.3421 22 6 6.3735 -6.8436 0.7773 23 1 6.4009 -6.3785 1.7516 24 6 6.5283 -8.2180 0.6596 25 7 6.7782 -8.9459 1.7273 26 14 6.3815 -9.0346 -1.0141 27 1 7.6793 -8.9345 -1.7291 28 1 5.3262 -8.3536 -1.8063 29 1 6.0227 -10.4647 -0.8374 30 7 2.1759 -1.1390 -0.0054 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6888 2.1434 -0.0004 35 1 4.1743 2.0636 0.0001 36 1 5.0345 -0.7869 1.7223 37 1 6.7249 -1.0641 1.2339 38 1 5.1783 -2.5724 3.3921 39 1 6.5258 -1.4372 3.6476 40 1 7.3291 -3.7720 3.7568 41 1 8.0219 -2.9396 2.3444 42 1 5.5707 -4.7585 2.2964 43 1 7.2036 -5.2150 1.7537 44 1 4.5516 -3.8449 -2.1200 45 1 6.3295 -3.6200 -2.0315 46 1 4.7637 -6.1530 -2.7827 47 1 6.1893 -5.4363 -3.6064 48 1 7.6864 -6.0840 -1.8352 49 1 6.5688 -7.4819 -1.8786 50 1 6.8860 -9.9064 1.6451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025227125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:28 Heat of formation + Delta-G solvation = 114.937312 kcal Electronic energy + Delta-G solvation = -32275.839036 eV Core-core repulsion = 28307.006453 eV Total energy + Delta-G solvation = -3968.832584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57734 -40.21373 -37.43635 -36.95446 -34.83993 -33.04554 -32.73563 -32.16626 -31.45269 -29.73969 -28.86866 -27.62004 -25.91084 -24.38652 -24.26437 -23.36754 -22.54193 -21.26811 -20.48113 -19.48061 -19.32957 -17.93023 -17.29968 -16.65147 -16.22771 -16.05558 -15.87412 -15.36160 -14.99675 -14.69011 -14.38758 -14.09606 -13.98226 -13.77606 -13.52460 -13.20121 -13.07077 -12.84250 -12.68495 -12.62076 -12.35959 -12.22446 -12.16606 -11.48319 -11.29891 -11.19349 -11.01829 -10.91534 -10.81529 -10.75098 -10.50308 -10.46094 -10.22639 -9.97582 -9.75552 -9.65683 -9.49736 -9.26897 -8.94273 -8.60993 -8.44520 -8.12771 -6.75826 -5.80232 -3.20261 0.32088 0.77748 2.62987 2.80556 3.42381 3.49913 3.54656 3.59271 3.89239 3.90799 4.12820 4.55822 4.63682 4.69389 4.85887 4.99109 5.07207 5.13446 5.17799 5.20788 5.30934 5.40589 5.42264 5.48398 5.55042 5.63298 5.68638 5.70656 5.79226 5.86369 5.94126 6.01054 6.06640 6.11311 6.25428 6.29343 6.32909 6.40152 6.51565 6.53655 6.65273 6.66700 6.75375 6.80502 7.00385 7.04064 7.22164 7.46081 7.55351 7.75760 7.95829 8.35504 8.48174 8.97762 9.81735 10.37513 11.34513 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.003727 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.417901 B = 7510.582484 C = 8385.900126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.172 3.828 3 C -0.219 4.219 4 C 0.143 3.857 5 N -0.494 5.494 6 C 0.300 3.700 7 C 0.572 3.428 8 O -0.478 6.478 9 N -0.582 5.582 10 C 0.119 3.881 11 C -0.137 4.137 12 C -0.122 4.122 13 C -0.140 4.140 14 C 0.143 3.857 15 H 0.066 0.934 16 C 0.162 3.838 17 H 0.087 0.913 18 C -0.123 4.123 19 C -0.133 4.133 20 C 0.108 3.892 21 N -0.608 5.608 22 C -0.258 4.258 23 H 0.121 0.879 24 C 0.019 3.981 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.293 1.293 28 H -0.273 1.273 29 H -0.313 1.313 30 N -0.476 5.476 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.026 0.974 49 H 0.039 0.961 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 24.650 -1.697 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.025 3.975 3 C -0.241 4.241 4 C -0.023 4.023 5 N -0.211 5.211 6 C 0.029 3.971 7 C 0.355 3.645 8 O -0.349 6.349 9 N -0.316 5.316 10 C -0.005 4.005 11 C -0.175 4.175 12 C -0.160 4.160 13 C -0.177 4.177 14 C 0.039 3.961 15 H 0.084 0.916 16 C 0.055 3.945 17 H 0.104 0.896 18 C -0.161 4.161 19 C -0.172 4.172 20 C -0.016 4.016 21 N -0.335 5.335 22 C -0.384 4.384 23 H 0.138 0.862 24 C -0.179 4.179 25 N -0.566 5.566 26 Si 0.749 3.251 27 H -0.221 1.221 28 H -0.201 1.201 29 H -0.242 1.242 30 N -0.191 5.191 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.168 0.832 35 H 0.191 0.809 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.056 0.944 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.815 22.986 -1.891 24.049 hybrid contribution -0.280 0.602 -0.916 1.132 sum -7.095 23.588 -2.807 24.791 Atomic orbital electron populations 1.20817 0.87386 1.04307 1.03959 1.21879 0.97938 0.87882 0.89828 1.22956 0.96688 1.00569 1.03918 1.23324 0.92190 0.96203 0.90560 1.68581 1.41193 0.98621 1.12752 1.23317 0.87286 0.93534 0.92941 1.17344 0.81316 0.84690 0.81171 1.90813 1.65203 1.36153 1.42778 1.47944 1.20413 1.21701 1.41562 1.21734 1.00590 0.89420 0.88716 1.21987 1.00466 0.98701 0.96358 1.21622 0.97776 0.96108 1.00469 1.22679 1.03343 0.98610 0.93091 1.22240 0.92659 0.83377 0.97804 0.91581 1.21629 0.95985 0.84532 0.92310 0.89598 1.23016 1.01236 0.96341 0.95516 1.22764 0.99915 0.97175 0.97300 1.22198 0.95352 0.97289 0.86750 1.44926 1.63840 1.20456 1.04247 1.19448 1.44076 0.88020 0.86898 0.86213 1.25159 0.99975 0.96091 0.96631 1.69699 1.53235 1.05896 1.27766 0.86521 0.78024 0.76033 0.84569 1.22141 1.20081 1.24233 1.68175 1.08708 1.30431 1.11833 0.89430 0.89538 0.89972 0.83208 0.80935 0.90363 0.91240 0.91886 0.91434 0.91911 0.92381 0.91567 0.85728 0.89054 0.93237 0.91620 0.92328 0.95632 0.94384 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.22 36.01 0.37 -0.34 16 2 C 0.17 1.73 6.82 -82.26 -0.56 1.17 16 3 C -0.22 -1.60 9.87 -39.17 -0.39 -1.99 16 4 C 0.14 1.18 11.30 -17.23 -0.19 0.99 16 5 N -0.49 -6.03 7.82 -11.12 -0.09 -6.11 16 6 C 0.30 4.48 6.62 -157.06 -1.04 3.44 16 7 C 0.57 10.04 7.08 -12.02 -0.09 9.95 16 8 O -0.48 -9.75 9.98 5.39 0.05 -9.70 16 9 N -0.58 -9.55 2.97 -166.07 -0.49 -10.05 16 10 C 0.12 1.56 5.70 -3.71 -0.02 1.53 16 11 C -0.14 -1.75 6.08 -26.61 -0.16 -1.92 16 12 C -0.12 -1.82 5.88 -26.69 -0.16 -1.97 16 13 C -0.14 -2.66 3.55 -26.61 -0.09 -2.76 16 14 C 0.14 2.67 2.65 -67.60 -0.18 2.49 16 15 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 16 C 0.16 3.53 2.30 -66.96 -0.15 3.37 16 17 H 0.09 2.12 5.83 -52.16 -0.30 1.82 16 18 C -0.12 -2.43 5.33 -24.90 -0.13 -2.57 16 19 C -0.13 -2.70 7.10 -24.47 -0.17 -2.87 16 20 C 0.11 2.54 5.69 -2.41 -0.01 2.53 16 21 N -0.61 -15.16 2.91 -162.44 -0.47 -15.64 16 22 C -0.26 -7.19 8.96 -15.06 -0.13 -7.33 16 23 H 0.12 3.36 4.27 -52.48 -0.22 3.14 16 24 C 0.02 0.57 5.50 -17.43 -0.10 0.48 16 25 N -0.92 -28.63 13.97 55.49 0.78 -27.85 16 26 Si 0.91 24.25 24.49 -169.99 -4.16 20.09 16 27 H -0.29 -7.62 7.09 56.52 0.40 -7.21 16 28 H -0.27 -7.15 6.32 56.52 0.36 -6.79 16 29 H -0.31 -8.44 7.11 56.52 0.40 -8.04 16 30 N -0.48 -6.87 10.23 -7.37 -0.08 -6.95 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.15 0.53 8.06 -52.48 -0.42 0.10 16 35 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.08 0.97 5.36 -51.93 -0.28 0.70 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.40 7.72 -51.93 -0.40 1.00 16 43 H 0.13 2.78 5.08 -51.93 -0.26 2.51 16 44 H 0.09 1.83 5.58 -52.01 -0.29 1.54 16 45 H 0.05 0.91 7.66 -51.93 -0.40 0.51 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.04 0.97 1.50 -51.93 -0.08 0.89 16 50 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -34.27 368.34 -9.45 -43.72 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.32 Total: 2.73 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -3.22 Total: 4.21 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -0.35 Total: -66.60 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.05 Total: -9.70 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.16 Total: 20.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.27 -9.45 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025227125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.657 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds