Wall clock time and date at job start Wed Apr 1 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38829 * 120.41611 * 2 1 4 4 C 1.38772 * 118.51003 * 179.97438 * 3 2 1 5 5 N 1.32127 * 119.16484 * 0.02562 * 4 3 2 6 6 C 1.32452 * 120.76834 * 359.97438 * 5 4 3 7 7 C 1.48537 * 119.18486 * 180.02562 * 6 5 4 8 8 O 1.21469 * 119.99544 * 215.39840 * 7 6 5 9 9 N 1.34768 * 120.00018 * 35.39581 * 7 6 5 10 10 C 1.46924 * 120.63260 * 11.21817 * 9 7 6 11 11 C 1.53193 * 108.77620 * 126.39310 * 10 9 7 12 12 C 1.53035 * 109.31709 * 54.63332 * 11 10 9 13 13 C 1.53044 * 109.53648 * 298.63986 * 12 11 10 14 14 C 1.46929 * 120.62847 * 191.21645 * 9 7 6 15 15 H 1.09003 * 109.70162 * 113.75509 * 14 9 7 16 16 C 1.53000 * 109.58785 * 353.39673 * 14 9 7 17 17 H 1.08999 * 109.87220 * 313.13609 * 16 14 9 18 18 C 1.54322 * 109.88115 * 74.31003 * 16 14 9 19 19 C 1.55158 * 102.94178 * 141.61092 * 18 16 14 20 20 C 1.55119 * 101.48447 * 324.32994 * 19 18 16 21 21 N 1.47017 * 109.88284 * 192.11717 * 16 14 9 22 22 C 1.36941 * 125.65095 * 61.60436 * 21 16 14 23 23 H 1.08004 * 119.99583 * 333.56515 * 22 21 16 24 24 C 1.38810 * 120.00029 * 153.56610 * 22 21 16 25 25 N 1.31615 * 119.99736 * 176.43474 * 24 22 21 26 26 Si 1.86803 * 120.00083 * 356.42739 * 24 22 21 27 27 H 1.48505 * 109.46782 * 83.30984 * 26 24 22 28 28 H 1.48497 * 109.47139 * 323.31319 * 26 24 22 29 29 H 1.48498 * 109.47139 * 203.30725 * 26 24 22 30 30 N 1.32088 * 120.42280 * 180.27396 * 2 1 3 31 31 H 1.09001 * 109.46966 * 90.00391 * 1 2 3 32 32 H 1.09007 * 109.46837 * 209.99378 * 1 2 3 33 33 H 1.08997 * 109.47220 * 329.99878 * 1 2 3 34 34 H 1.08011 * 120.74361 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.42013 * 179.97438 * 4 3 2 36 36 H 1.08998 * 109.58703 * 6.60100 * 10 9 7 37 37 H 1.09005 * 109.70362 * 246.24438 * 10 9 7 38 38 H 1.09007 * 109.49364 * 294.68200 * 11 10 9 39 39 H 1.09004 * 109.52503 * 174.60622 * 11 10 9 40 40 H 1.08997 * 109.46564 * 178.61755 * 12 11 10 41 41 H 1.09000 * 109.44663 * 58.64692 * 12 11 10 42 42 H 1.09000 * 109.49774 * 301.40795 * 13 12 11 43 43 H 1.09000 * 109.52079 * 181.33067 * 13 12 11 44 44 H 1.09010 * 110.71628 * 259.97565 * 18 16 14 45 45 H 1.09000 * 110.71973 * 23.24109 * 18 16 14 46 46 H 1.08997 * 111.00266 * 82.57767 * 19 18 16 47 47 H 1.09004 * 110.99891 * 206.41926 * 19 18 16 48 48 H 1.09004 * 110.50021 * 278.45501 * 20 19 18 49 49 H 1.09001 * 110.34562 * 156.06049 * 20 19 18 50 50 H 0.97006 * 120.00000 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5968 1.1511 0.0005 5 7 4.2020 -0.0235 0.0005 6 6 3.5006 -1.1471 0.0005 7 6 4.2171 -2.4482 0.0011 8 8 3.7592 -3.3939 -0.6083 9 7 5.3753 -2.5793 0.6776 10 6 5.8184 -1.5363 1.6127 11 6 6.1053 -2.1821 2.9718 12 6 7.1044 -3.3266 2.7877 13 6 6.5014 -4.3889 1.8657 14 6 6.2190 -3.7682 0.4940 15 1 7.1589 -3.4824 0.0218 16 6 5.4896 -4.7835 -0.3881 17 1 4.4623 -4.9030 -0.0438 18 6 5.5025 -4.3081 -1.8562 19 6 5.7088 -5.6271 -2.6468 20 6 6.6552 -6.4102 -1.6996 21 7 6.1862 -6.0773 -0.3421 22 6 6.3735 -6.8436 0.7773 23 1 6.4009 -6.3785 1.7516 24 6 6.5283 -8.2180 0.6596 25 7 6.7782 -8.9459 1.7273 26 14 6.3815 -9.0346 -1.0141 27 1 7.6793 -8.9345 -1.7291 28 1 5.3262 -8.3536 -1.8063 29 1 6.0227 -10.4647 -0.8374 30 7 2.1759 -1.1390 -0.0054 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6888 2.1434 -0.0004 35 1 4.1743 2.0636 0.0001 36 1 5.0345 -0.7869 1.7223 37 1 6.7249 -1.0641 1.2339 38 1 5.1783 -2.5724 3.3921 39 1 6.5258 -1.4372 3.6476 40 1 7.3291 -3.7720 3.7568 41 1 8.0219 -2.9396 2.3444 42 1 5.5707 -4.7585 2.2964 43 1 7.2036 -5.2150 1.7537 44 1 4.5516 -3.8449 -2.1200 45 1 6.3295 -3.6200 -2.0315 46 1 4.7637 -6.1530 -2.7827 47 1 6.1893 -5.4363 -3.6064 48 1 7.6864 -6.0840 -1.8352 49 1 6.5688 -7.4819 -1.8786 50 1 6.8860 -9.9064 1.6451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025227125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:26 Heat of formation + Delta-G solvation = 91.617257 kcal Electronic energy + Delta-G solvation = -32276.850270 eV Core-core repulsion = 28307.006453 eV Total energy + Delta-G solvation = -3969.843817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.54541 -41.47462 -39.06877 -38.33474 -35.63066 -34.65419 -34.06648 -33.50353 -32.84713 -31.69303 -29.50966 -29.13745 -27.08566 -26.34760 -25.42904 -24.11524 -24.03968 -22.65220 -22.07215 -21.09665 -20.65087 -19.08651 -18.71464 -18.11369 -17.94895 -17.15802 -16.80462 -16.66674 -16.32927 -15.94297 -15.68729 -15.47499 -15.32665 -14.89600 -14.83160 -14.34850 -14.23580 -14.15649 -14.06819 -13.93720 -13.85289 -13.65127 -13.18974 -13.17192 -13.09872 -12.73986 -12.49466 -12.30480 -12.22549 -12.19918 -11.94933 -11.75755 -11.62072 -11.40454 -11.27376 -11.03061 -10.83490 -10.71396 -10.50636 -10.32030 -10.18070 -9.50855 -8.82072 -8.07575 -5.43899 -0.50513 0.08435 1.25993 1.36506 1.45223 1.48238 1.64646 2.43355 2.64841 2.86346 3.14357 3.20366 3.36659 3.56861 3.72107 3.83927 3.88998 3.92129 4.00893 4.08604 4.09555 4.12833 4.26753 4.31279 4.35076 4.38511 4.58232 4.61409 4.62697 4.71240 4.73073 4.74194 4.79506 4.84016 4.89593 4.98525 5.03019 5.04679 5.07974 5.15125 5.28273 5.29036 5.35262 5.40199 5.49453 5.59396 5.76664 5.87818 5.96116 6.23313 6.32083 6.81579 6.89029 7.12077 7.61558 8.23204 9.09922 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.003727 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.417901 B = 7510.582484 C = 8385.900126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.149 3.851 3 C -0.189 4.189 4 C 0.139 3.861 5 N -0.502 5.502 6 C 0.274 3.726 7 C 0.565 3.435 8 O -0.522 6.522 9 N -0.582 5.582 10 C 0.119 3.881 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.130 4.130 14 C 0.153 3.847 15 H 0.076 0.924 16 C 0.161 3.839 17 H 0.051 0.949 18 C -0.109 4.109 19 C -0.126 4.126 20 C 0.098 3.902 21 N -0.624 5.624 22 C -0.236 4.236 23 H 0.109 0.891 24 C -0.043 4.043 25 N -0.965 5.965 26 Si 0.965 3.035 27 H -0.282 1.282 28 H -0.272 1.272 29 H -0.322 1.322 30 N -0.518 5.518 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.200 0.800 35 H 0.219 0.781 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.030 0.970 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.097 0.903 48 H 0.039 0.961 49 H 0.023 0.977 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 29.897 -2.782 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.003 3.997 3 C -0.210 4.210 4 C -0.026 4.026 5 N -0.220 5.220 6 C 0.004 3.996 7 C 0.350 3.650 8 O -0.397 6.397 9 N -0.315 5.315 10 C -0.002 4.002 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.168 4.168 14 C 0.049 3.951 15 H 0.093 0.907 16 C 0.055 3.945 17 H 0.068 0.932 18 C -0.146 4.146 19 C -0.164 4.164 20 C -0.025 4.025 21 N -0.351 5.351 22 C -0.365 4.365 23 H 0.126 0.874 24 C -0.236 4.236 25 N -0.614 5.614 26 Si 0.801 3.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H -0.252 1.252 30 N -0.235 5.235 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.217 0.783 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.115 0.885 48 H 0.057 0.943 49 H 0.040 0.960 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.832 28.316 -2.987 29.281 hybrid contribution -0.400 -0.788 -0.527 1.029 sum -7.232 27.527 -3.514 28.678 Atomic orbital electron populations 1.20931 0.85374 1.05169 1.04722 1.22537 0.99385 0.87851 0.89878 1.23478 0.96435 1.01310 0.99807 1.24164 0.93252 0.96097 0.89038 1.68514 1.41407 0.99028 1.13069 1.22506 0.87548 0.93015 0.96500 1.17847 0.81167 0.85699 0.80296 1.90772 1.66304 1.38064 1.44547 1.47949 1.20068 1.21422 1.42078 1.21957 1.01758 0.88659 0.87849 1.21959 0.99167 0.98563 0.97062 1.21560 0.98760 0.95564 0.99422 1.22352 1.00776 0.99062 0.94584 1.21810 0.92825 0.83818 0.96654 0.90662 1.21628 0.94170 0.84046 0.94608 0.93166 1.22885 1.01892 0.96308 0.93554 1.22755 0.98817 0.96473 0.98345 1.22350 0.96873 0.96827 0.86482 1.45095 1.64396 1.21441 1.04151 1.19622 1.40734 0.88236 0.87871 0.87434 1.25754 1.01533 0.96935 0.99378 1.69819 1.56215 1.05836 1.29481 0.85634 0.78362 0.74435 0.81434 1.20970 1.19940 1.25228 1.68059 1.08936 1.33311 1.13242 0.88605 0.91372 0.86400 0.78334 0.76436 0.89163 0.89190 0.93587 0.87616 0.91771 0.90573 0.95112 0.89471 0.89285 0.91362 0.92918 0.88492 0.94337 0.95979 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.22 71.24 0.73 -0.41 16 2 C 0.15 2.64 6.82 42.66 0.29 2.93 16 3 C -0.19 -1.85 9.87 22.54 0.22 -1.63 16 4 C 0.14 1.65 11.30 84.78 0.96 2.60 16 5 N -0.50 -10.87 7.82 -189.10 -1.48 -12.35 16 6 C 0.27 8.03 6.62 137.68 0.91 8.94 16 7 C 0.56 20.21 7.08 86.99 0.62 20.83 16 8 O -0.52 -22.37 9.98 -3.62 -0.04 -22.40 16 9 N -0.58 -19.01 2.97 -797.63 -2.37 -21.38 16 10 C 0.12 2.88 5.70 86.36 0.49 3.37 16 11 C -0.13 -3.08 6.08 30.67 0.19 -2.89 16 12 C -0.12 -3.36 5.88 30.62 0.18 -3.18 16 13 C -0.13 -5.18 3.55 30.67 0.11 -5.07 16 14 C 0.15 5.82 2.65 44.97 0.12 5.94 16 15 H 0.08 2.74 7.84 -2.39 -0.02 2.72 16 16 C 0.16 7.25 2.30 45.34 0.10 7.35 16 17 H 0.05 2.66 5.83 -11.15 -0.07 2.60 16 18 C -0.11 -4.25 5.33 31.78 0.17 -4.08 16 19 C -0.13 -4.96 7.10 32.06 0.23 -4.73 16 20 C 0.10 4.59 5.69 86.93 0.49 5.09 16 21 N -0.62 -32.06 2.91 -667.84 -1.95 -34.01 16 22 C -0.24 -13.87 8.96 84.03 0.75 -13.12 16 23 H 0.11 6.48 4.27 -2.91 -0.01 6.47 16 24 C -0.04 -2.63 5.50 84.86 0.47 -2.16 16 25 N -0.97 -62.94 13.97 21.65 0.30 -62.64 16 26 Si 0.97 51.87 24.49 68.60 1.68 53.55 16 27 H -0.28 -14.42 7.09 99.48 0.71 -13.71 16 28 H -0.27 -14.30 6.32 99.48 0.63 -13.67 16 29 H -0.32 -17.54 7.11 99.48 0.71 -16.84 16 30 N -0.52 -14.84 10.23 -177.24 -1.81 -16.65 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.12 0.39 8.10 -2.39 -0.02 0.37 16 34 H 0.20 -0.03 8.06 -2.90 -0.02 -0.06 16 35 H 0.22 0.49 8.06 -2.91 -0.02 0.46 16 36 H 0.09 2.02 5.36 -2.39 -0.01 2.01 16 37 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 38 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.03 1.40 7.72 -2.39 -0.02 1.38 16 43 H 0.09 4.13 5.08 -2.39 -0.01 4.12 16 44 H 0.09 3.62 5.58 -8.82 -0.05 3.57 16 45 H 0.07 2.39 7.66 -2.39 -0.02 2.37 16 46 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 48 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.02 1.14 1.50 -2.39 0.00 1.14 16 50 H 0.26 16.19 8.31 -92.70 -0.77 15.42 16 Total: -1.00 -82.56 368.34 2.17 -80.39 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.80 Total: 15.71 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 7.03 Total: 19.78 kcal Atomic # 7 Polarization: -139.72 SS G_CDS: -7.31 Total: -147.02 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.04 Total: -22.40 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 1.68 Total: 53.55 kcal Total: -82.56 2.17 -80.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025227125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.006 kcal (2) G-P(sol) polarization free energy of solvation -82.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds