Wall clock time and date at job start Wed Apr 1 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38822 * 120.41591 * 2 1 4 4 C 1.38787 * 118.50570 * 180.02562 * 3 2 1 5 5 N 1.32126 * 119.15923 * 359.73667 * 4 3 2 6 6 C 1.32440 * 120.77407 * 0.54046 * 5 4 3 7 7 C 1.48536 * 119.18754 * 179.72211 * 6 5 4 8 8 O 1.21477 * 120.00128 * 133.13983 * 7 6 5 9 9 N 1.34774 * 119.99936 * 313.13469 * 7 6 5 10 10 C 1.46960 * 120.65425 * 0.68275 * 9 7 6 11 11 C 1.53196 * 108.88569 * 126.46408 * 10 9 7 12 12 C 1.53034 * 109.31509 * 54.55826 * 11 10 9 13 13 C 1.53039 * 109.53992 * 298.63884 * 12 11 10 14 14 C 1.46927 * 120.63280 * 180.50206 * 9 7 6 15 15 H 1.09001 * 109.58695 * 113.67555 * 14 9 7 16 16 C 1.53006 * 109.58568 * 353.39890 * 14 9 7 17 17 H 1.09006 * 109.99910 * 53.66669 * 16 14 9 18 18 C 1.54332 * 109.98845 * 292.63208 * 16 14 9 19 19 C 1.55159 * 103.01734 * 218.66322 * 18 16 14 20 20 C 1.54914 * 101.58230 * 35.30812 * 19 18 16 21 21 N 1.47020 * 109.88270 * 174.76205 * 16 14 9 22 22 C 1.36931 * 125.65035 * 298.39900 * 21 16 14 23 23 H 1.08000 * 120.00110 * 349.69331 * 22 21 16 24 24 C 1.38816 * 120.00201 * 169.70100 * 22 21 16 25 25 N 1.31617 * 119.99778 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47113 * 179.97438 * 26 24 22 28 28 H 1.48496 * 109.47224 * 299.99459 * 26 24 22 29 29 H 1.48502 * 109.47147 * 59.99845 * 26 24 22 30 30 N 1.32096 * 120.41561 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47347 * 269.98158 * 1 2 3 32 32 H 1.09004 * 109.47193 * 29.98143 * 1 2 3 33 33 H 1.09005 * 109.47360 * 149.97712 * 1 2 3 34 34 H 1.08000 * 120.74844 * 359.97438 * 3 2 1 35 35 H 1.07987 * 120.41790 * 179.97438 * 4 3 2 36 36 H 1.08999 * 109.59708 * 6.61080 * 10 9 7 37 37 H 1.08990 * 109.59020 * 246.31800 * 10 9 7 38 38 H 1.09000 * 109.49890 * 294.60747 * 11 10 9 39 39 H 1.09007 * 109.49952 * 174.51256 * 11 10 9 40 40 H 1.09001 * 109.46690 * 178.61177 * 12 11 10 41 41 H 1.09006 * 109.44512 * 58.64587 * 12 11 10 42 42 H 1.09005 * 109.49699 * 301.41029 * 13 12 11 43 43 H 1.08997 * 109.50147 * 181.31521 * 13 12 11 44 44 H 1.09000 * 110.85345 * 100.20160 * 18 16 14 45 45 H 1.08999 * 110.66775 * 337.04240 * 18 16 14 46 46 H 1.08997 * 111.00595 * 277.23414 * 19 18 16 47 47 H 1.09007 * 111.00233 * 153.38005 * 19 18 16 48 48 H 1.09000 * 110.36624 * 204.14700 * 20 19 18 49 49 H 1.09003 * 110.45601 * 81.87650 * 20 19 18 50 50 H 0.97006 * 120.00016 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1972 0.0000 4 6 3.5969 1.1509 -0.0005 5 7 4.2018 -0.0237 0.0043 6 6 3.5005 -1.1472 -0.0012 7 6 4.2169 -2.4483 -0.0018 8 8 3.8769 -3.3293 0.7624 9 7 5.2442 -2.6516 -0.8502 10 6 5.6771 -1.5907 -1.7704 11 6 7.1798 -1.3569 -1.5858 12 6 7.9236 -2.6828 -1.7607 13 6 7.4550 -3.6770 -0.6958 14 6 5.9555 -3.9370 -0.8703 15 1 5.7797 -4.4371 -1.8227 16 6 5.4516 -4.8200 0.2732 17 1 4.3662 -4.9091 0.2249 18 6 5.8658 -4.2130 1.6304 19 6 6.2360 -5.4619 2.4733 20 6 6.8670 -6.3850 1.4011 21 7 6.0671 -6.1522 0.1848 22 6 5.9257 -7.0291 -0.8573 23 1 5.1936 -6.8384 -1.6280 24 6 6.7233 -8.1634 -0.9231 25 7 7.6157 -8.3957 0.0161 26 14 6.5299 -9.3600 -2.3443 27 1 7.4916 -10.4800 -2.1829 28 1 5.1445 -9.8945 -2.3564 29 1 6.8003 -8.6566 -3.6239 30 7 2.1757 -1.1392 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3634 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6889 2.1433 -0.0004 35 1 4.1744 2.0634 -0.0010 36 1 5.1346 -0.6714 -1.5497 37 1 5.4782 -1.8946 -2.7980 38 1 7.3668 -0.9640 -0.5864 39 1 7.5310 -0.6418 -2.3299 40 1 8.9954 -2.5149 -1.6543 41 1 7.7161 -3.0874 -2.7515 42 1 7.6394 -3.2623 0.2953 43 1 8.0019 -4.6133 -0.8063 44 1 5.0343 -3.6740 2.0844 45 1 6.7291 -3.5582 1.5115 46 1 5.3463 -5.9182 2.9071 47 1 6.9610 -5.2099 3.2474 48 1 6.7949 -7.4282 1.7088 49 1 7.9081 -6.1122 1.2286 50 1 8.1733 -9.1881 -0.0301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025227126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:31 Heat of formation + Delta-G solvation = 85.083716 kcal Electronic energy + Delta-G solvation = -32223.751128 eV Core-core repulsion = 28253.623995 eV Total energy + Delta-G solvation = -3970.127133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.56812 -40.16457 -37.24689 -36.66200 -34.81071 -33.07001 -32.43060 -32.34299 -30.99805 -29.12195 -28.87002 -27.25041 -25.69935 -24.46305 -24.12751 -23.33707 -22.69392 -21.02961 -20.28141 -19.62942 -18.53831 -17.91658 -17.27483 -16.64840 -16.05703 -15.81764 -15.25919 -15.06171 -14.81220 -14.56389 -14.47875 -14.06037 -13.85030 -13.62875 -13.59359 -13.47491 -13.00018 -12.94211 -12.76167 -12.67027 -11.95144 -11.75937 -11.59487 -11.28189 -11.19420 -11.12314 -10.97315 -10.83465 -10.75608 -10.52321 -10.45014 -10.18652 -10.05411 -10.00236 -9.73378 -9.55867 -9.46686 -9.44223 -9.34143 -8.75835 -8.44551 -8.02331 -6.59792 -5.59102 -2.93313 0.37744 0.78744 2.65510 2.84542 3.46588 3.47341 3.51409 3.52286 3.92208 3.97010 4.15082 4.57924 4.60745 4.71054 4.87613 5.03622 5.09347 5.13024 5.18772 5.26152 5.43441 5.47661 5.52402 5.56798 5.63571 5.73560 5.75202 5.90754 5.98717 6.00275 6.08195 6.15267 6.16479 6.19676 6.28329 6.44514 6.53040 6.59306 6.67882 6.69619 6.82034 6.91199 7.02950 7.11588 7.13403 7.57117 7.62523 7.74992 7.76246 7.78589 7.98022 8.37119 8.51026 9.35121 9.97420 10.67300 11.50604 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003497 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.981328 B = 8005.149902 C = 8411.287568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.173 3.827 3 C -0.222 4.222 4 C 0.144 3.856 5 N -0.495 5.495 6 C 0.305 3.695 7 C 0.572 3.428 8 O -0.479 6.479 9 N -0.581 5.581 10 C 0.099 3.901 11 C -0.125 4.125 12 C -0.122 4.122 13 C -0.124 4.124 14 C 0.138 3.862 15 H 0.076 0.924 16 C 0.161 3.839 17 H 0.077 0.923 18 C -0.126 4.126 19 C -0.150 4.150 20 C 0.172 3.828 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.906 3.094 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.286 1.286 30 N -0.480 5.480 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.017 0.983 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 23.553 -1.528 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.026 3.974 3 C -0.244 4.244 4 C -0.022 4.022 5 N -0.212 5.212 6 C 0.034 3.966 7 C 0.355 3.645 8 O -0.351 6.351 9 N -0.314 5.314 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.159 4.159 13 C -0.162 4.162 14 C 0.034 3.966 15 H 0.094 0.906 16 C 0.054 3.946 17 H 0.094 0.906 18 C -0.163 4.163 19 C -0.189 4.189 20 C 0.047 3.953 21 N -0.319 5.319 22 C -0.349 4.349 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.567 5.567 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.213 1.213 29 H -0.213 1.213 30 N -0.196 5.196 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.191 0.809 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.035 0.965 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.300 21.914 -1.169 23.128 hybrid contribution -0.292 0.452 -0.922 1.068 sum -7.592 22.366 -2.091 23.712 Atomic orbital electron populations 1.20816 0.87404 1.04267 1.03972 1.21868 0.97906 0.87901 0.89707 1.22931 0.96653 1.00537 1.04240 1.23336 0.92218 0.96188 0.90433 1.68498 1.41020 0.98606 1.13113 1.23335 0.87297 0.93547 0.92400 1.17306 0.80865 0.84165 0.82147 1.90846 1.65189 1.40343 1.38684 1.48066 1.31158 1.15703 1.36518 1.21992 0.96297 0.91441 0.92743 1.21810 0.94371 0.97865 1.02262 1.21575 0.99316 0.95191 0.99839 1.21964 0.95735 1.00133 0.98351 1.22292 0.91144 0.80579 1.02572 0.90638 1.21722 0.97749 0.84507 0.90641 0.90560 1.23038 0.99808 0.97175 0.96291 1.23015 0.99840 0.97795 0.98237 1.21478 0.92044 0.98079 0.83720 1.44720 1.56535 1.11675 1.18980 1.18955 1.14667 1.00772 1.00516 0.90980 1.24793 0.97953 0.99112 0.98481 1.69936 1.25015 1.28120 1.33636 0.86281 0.77155 0.80763 0.82078 1.21747 1.21273 1.21331 1.68183 1.08651 1.30477 1.12257 0.89407 0.89981 0.89576 0.83227 0.80926 0.88778 0.92235 0.91354 0.91540 0.92204 0.92173 0.91587 0.89249 0.90353 0.92638 0.92649 0.93172 0.90523 0.96518 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.22 36.00 0.37 -0.35 16 2 C 0.17 1.76 6.82 -82.26 -0.56 1.20 16 3 C -0.22 -1.66 9.87 -39.16 -0.39 -2.04 16 4 C 0.14 1.22 11.30 -17.22 -0.19 1.02 16 5 N -0.50 -6.18 7.72 -11.12 -0.09 -6.27 16 6 C 0.30 4.65 6.66 -157.07 -1.05 3.61 16 7 C 0.57 10.34 7.05 -12.01 -0.08 10.26 16 8 O -0.48 -10.09 10.08 5.39 0.05 -10.03 16 9 N -0.58 -9.84 2.96 -166.04 -0.49 -10.33 16 10 C 0.10 1.32 6.19 -3.69 -0.02 1.30 16 11 C -0.12 -1.54 6.08 -26.61 -0.16 -1.70 16 12 C -0.12 -1.75 5.88 -26.69 -0.16 -1.91 16 13 C -0.12 -2.26 4.97 -26.61 -0.13 -2.39 16 14 C 0.14 2.71 2.70 -67.60 -0.18 2.53 16 15 H 0.08 1.62 7.84 -51.93 -0.41 1.21 16 16 C 0.16 3.66 2.28 -66.95 -0.15 3.51 16 17 H 0.08 1.94 5.77 -52.82 -0.30 1.63 16 18 C -0.13 -2.64 5.08 -24.89 -0.13 -2.76 16 19 C -0.15 -3.26 7.09 -24.58 -0.17 -3.43 16 20 C 0.17 4.39 5.51 -2.53 -0.01 4.38 16 21 N -0.59 -15.58 2.76 -162.56 -0.45 -16.03 16 22 C -0.22 -6.21 9.73 -15.06 -0.15 -6.36 16 23 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 25 N -0.92 -27.25 10.40 55.49 0.58 -26.68 16 26 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 N -0.48 -7.02 10.29 -7.38 -0.08 -7.09 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 35 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.09 1.18 4.63 -51.93 -0.24 0.94 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.21 5.55 -51.93 -0.29 0.93 16 43 H 0.09 1.93 7.96 -51.93 -0.41 1.52 16 44 H 0.08 1.68 5.67 -51.89 -0.29 1.38 16 45 H 0.06 1.11 5.23 -51.93 -0.27 0.84 16 46 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 48 H 0.08 2.19 6.59 -51.93 -0.34 1.84 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -33.45 378.99 -10.65 -44.10 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.60 Total: 2.59 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -3.27 Total: 6.55 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -0.52 Total: -66.40 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.05 Total: -10.03 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.45 -10.65 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025227126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.185 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds