Wall clock time and date at job start Wed Apr 1 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38822 * 120.41591 * 2 1 4 4 C 1.38787 * 118.50570 * 180.02562 * 3 2 1 5 5 N 1.32126 * 119.15923 * 359.73667 * 4 3 2 6 6 C 1.32440 * 120.77407 * 0.54046 * 5 4 3 7 7 C 1.48536 * 119.18754 * 179.72211 * 6 5 4 8 8 O 1.21477 * 120.00128 * 133.13983 * 7 6 5 9 9 N 1.34774 * 119.99936 * 313.13469 * 7 6 5 10 10 C 1.46960 * 120.65425 * 0.68275 * 9 7 6 11 11 C 1.53196 * 108.88569 * 126.46408 * 10 9 7 12 12 C 1.53034 * 109.31509 * 54.55826 * 11 10 9 13 13 C 1.53039 * 109.53992 * 298.63884 * 12 11 10 14 14 C 1.46927 * 120.63280 * 180.50206 * 9 7 6 15 15 H 1.09001 * 109.58695 * 113.67555 * 14 9 7 16 16 C 1.53006 * 109.58568 * 353.39890 * 14 9 7 17 17 H 1.09006 * 109.99910 * 53.66669 * 16 14 9 18 18 C 1.54332 * 109.98845 * 292.63208 * 16 14 9 19 19 C 1.55159 * 103.01734 * 218.66322 * 18 16 14 20 20 C 1.54914 * 101.58230 * 35.30812 * 19 18 16 21 21 N 1.47020 * 109.88270 * 174.76205 * 16 14 9 22 22 C 1.36931 * 125.65035 * 298.39900 * 21 16 14 23 23 H 1.08000 * 120.00110 * 349.69331 * 22 21 16 24 24 C 1.38816 * 120.00201 * 169.70100 * 22 21 16 25 25 N 1.31617 * 119.99778 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47113 * 179.97438 * 26 24 22 28 28 H 1.48496 * 109.47224 * 299.99459 * 26 24 22 29 29 H 1.48502 * 109.47147 * 59.99845 * 26 24 22 30 30 N 1.32096 * 120.41561 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47347 * 269.98158 * 1 2 3 32 32 H 1.09004 * 109.47193 * 29.98143 * 1 2 3 33 33 H 1.09005 * 109.47360 * 149.97712 * 1 2 3 34 34 H 1.08000 * 120.74844 * 359.97438 * 3 2 1 35 35 H 1.07987 * 120.41790 * 179.97438 * 4 3 2 36 36 H 1.08999 * 109.59708 * 6.61080 * 10 9 7 37 37 H 1.08990 * 109.59020 * 246.31800 * 10 9 7 38 38 H 1.09000 * 109.49890 * 294.60747 * 11 10 9 39 39 H 1.09007 * 109.49952 * 174.51256 * 11 10 9 40 40 H 1.09001 * 109.46690 * 178.61177 * 12 11 10 41 41 H 1.09006 * 109.44512 * 58.64587 * 12 11 10 42 42 H 1.09005 * 109.49699 * 301.41029 * 13 12 11 43 43 H 1.08997 * 109.50147 * 181.31521 * 13 12 11 44 44 H 1.09000 * 110.85345 * 100.20160 * 18 16 14 45 45 H 1.08999 * 110.66775 * 337.04240 * 18 16 14 46 46 H 1.08997 * 111.00595 * 277.23414 * 19 18 16 47 47 H 1.09007 * 111.00233 * 153.38005 * 19 18 16 48 48 H 1.09000 * 110.36624 * 204.14700 * 20 19 18 49 49 H 1.09003 * 110.45601 * 81.87650 * 20 19 18 50 50 H 0.97006 * 120.00016 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1972 0.0000 4 6 3.5969 1.1509 -0.0005 5 7 4.2018 -0.0237 0.0043 6 6 3.5005 -1.1472 -0.0012 7 6 4.2169 -2.4483 -0.0018 8 8 3.8769 -3.3293 0.7624 9 7 5.2442 -2.6516 -0.8502 10 6 5.6771 -1.5907 -1.7704 11 6 7.1798 -1.3569 -1.5858 12 6 7.9236 -2.6828 -1.7607 13 6 7.4550 -3.6770 -0.6958 14 6 5.9555 -3.9370 -0.8703 15 1 5.7797 -4.4371 -1.8227 16 6 5.4516 -4.8200 0.2732 17 1 4.3662 -4.9091 0.2249 18 6 5.8658 -4.2130 1.6304 19 6 6.2360 -5.4619 2.4733 20 6 6.8670 -6.3850 1.4011 21 7 6.0671 -6.1522 0.1848 22 6 5.9257 -7.0291 -0.8573 23 1 5.1936 -6.8384 -1.6280 24 6 6.7233 -8.1634 -0.9231 25 7 7.6157 -8.3957 0.0161 26 14 6.5299 -9.3600 -2.3443 27 1 7.4916 -10.4800 -2.1829 28 1 5.1445 -9.8945 -2.3564 29 1 6.8003 -8.6566 -3.6239 30 7 2.1757 -1.1392 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3634 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6889 2.1433 -0.0004 35 1 4.1744 2.0634 -0.0010 36 1 5.1346 -0.6714 -1.5497 37 1 5.4782 -1.8946 -2.7980 38 1 7.3668 -0.9640 -0.5864 39 1 7.5310 -0.6418 -2.3299 40 1 8.9954 -2.5149 -1.6543 41 1 7.7161 -3.0874 -2.7515 42 1 7.6394 -3.2623 0.2953 43 1 8.0019 -4.6133 -0.8063 44 1 5.0343 -3.6740 2.0844 45 1 6.7291 -3.5582 1.5115 46 1 5.3463 -5.9182 2.9071 47 1 6.9610 -5.2099 3.2474 48 1 6.7949 -7.4282 1.7088 49 1 7.9081 -6.1122 1.2286 50 1 8.1733 -9.1881 -0.0301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025227126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:30 Heat of formation + Delta-G solvation = 64.264641 kcal Electronic energy + Delta-G solvation = -32224.653911 eV Core-core repulsion = 28253.623995 eV Total energy + Delta-G solvation = -3971.029915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.56803 -41.46334 -38.84433 -38.18782 -35.62950 -34.58850 -33.97821 -33.50290 -32.47351 -31.15860 -29.51880 -28.79172 -27.00543 -26.44295 -25.38448 -24.16276 -24.06354 -22.36944 -21.89252 -21.40281 -19.93494 -19.05930 -18.75227 -17.99621 -17.31713 -17.02620 -16.67873 -16.35829 -16.24776 -15.94653 -15.82537 -15.52247 -15.16898 -15.03412 -14.73398 -14.44116 -14.29626 -14.15066 -13.94619 -13.75584 -13.52938 -13.17446 -13.10049 -13.02408 -12.81966 -12.70291 -12.57902 -12.21534 -12.10989 -12.01272 -11.90372 -11.75425 -11.66901 -11.48839 -11.34925 -11.23147 -11.09552 -10.67882 -10.55310 -10.32363 -10.22137 -9.50208 -8.71794 -7.79335 -5.16146 -0.46556 0.07479 1.43694 1.44614 1.47529 1.53728 1.64117 2.51695 2.60917 2.87034 3.18796 3.35418 3.57088 3.69801 3.78709 3.89110 3.94628 3.97223 4.09040 4.11751 4.20436 4.29426 4.31430 4.34811 4.41253 4.56044 4.61088 4.63994 4.72169 4.78210 4.79943 4.85398 4.86554 4.98431 5.03688 5.07707 5.09483 5.21472 5.22927 5.24645 5.32017 5.40393 5.48303 5.51935 5.56736 5.69107 5.78772 5.81358 5.95837 6.24764 6.36570 6.87170 7.07517 7.16279 7.84014 8.52694 9.29286 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003497 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.981328 B = 8005.149902 C = 8411.287568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.151 3.849 3 C -0.191 4.191 4 C 0.140 3.860 5 N -0.505 5.505 6 C 0.280 3.720 7 C 0.566 3.434 8 O -0.525 6.525 9 N -0.580 5.580 10 C 0.095 3.905 11 C -0.114 4.114 12 C -0.117 4.117 13 C -0.113 4.113 14 C 0.149 3.851 15 H 0.050 0.950 16 C 0.162 3.838 17 H 0.047 0.953 18 C -0.108 4.108 19 C -0.140 4.140 20 C 0.182 3.818 21 N -0.611 5.611 22 C -0.233 4.233 23 H 0.068 0.932 24 C -0.059 4.059 25 N -0.946 5.946 26 Si 0.972 3.028 27 H -0.292 1.292 28 H -0.283 1.283 29 H -0.276 1.276 30 N -0.521 5.521 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.200 0.800 35 H 0.220 0.780 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.079 0.921 48 H 0.042 0.958 49 H -0.002 1.002 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 28.224 -2.536 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.006 3.994 3 C -0.212 4.212 4 C -0.024 4.024 5 N -0.223 5.223 6 C 0.010 3.990 7 C 0.351 3.649 8 O -0.400 6.400 9 N -0.313 5.313 10 C -0.027 4.027 11 C -0.152 4.152 12 C -0.154 4.154 13 C -0.151 4.151 14 C 0.044 3.956 15 H 0.068 0.932 16 C 0.056 3.944 17 H 0.065 0.935 18 C -0.146 4.146 19 C -0.178 4.178 20 C 0.057 3.943 21 N -0.336 5.336 22 C -0.362 4.362 23 H 0.086 0.914 24 C -0.252 4.252 25 N -0.595 5.595 26 Si 0.800 3.200 27 H -0.218 1.218 28 H -0.209 1.209 29 H -0.202 1.202 30 N -0.238 5.238 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.217 0.783 35 H 0.236 0.764 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.097 0.903 48 H 0.060 0.940 49 H 0.016 0.984 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.890 26.660 -2.201 27.890 hybrid contribution -0.272 -0.838 -0.598 1.065 sum -8.162 25.822 -2.800 27.226 Atomic orbital electron populations 1.20935 0.85274 1.05240 1.04729 1.22547 0.99404 0.87822 0.89677 1.23464 0.96359 1.01324 1.00041 1.24182 0.93328 0.96017 0.88879 1.68408 1.41302 0.99053 1.13536 1.22448 0.87606 0.92897 0.96086 1.17845 0.80523 0.85261 0.81281 1.90795 1.66351 1.42401 1.40459 1.48046 1.30873 1.15287 1.37060 1.22267 0.97446 0.90853 0.92109 1.21769 0.92846 0.97033 1.03513 1.21550 1.00611 0.95249 0.98001 1.21786 0.93975 0.99420 0.99910 1.21742 0.92445 0.81754 0.99658 0.93207 1.21647 0.95881 0.83899 0.92998 0.93534 1.22886 1.00078 0.96666 0.94919 1.22924 0.99972 0.97094 0.97849 1.21219 0.91444 0.96856 0.84829 1.44913 1.56644 1.13231 1.18855 1.19196 1.14583 1.01482 1.00920 0.91394 1.25557 0.97913 1.00750 1.01002 1.70145 1.25779 1.28380 1.35196 0.85254 0.76952 0.78397 0.79353 1.21772 1.20892 1.20211 1.68064 1.08740 1.33392 1.13639 0.88637 0.86330 0.91274 0.78264 0.76378 0.87133 0.91683 0.91335 0.87802 0.90485 0.92347 0.91692 0.93346 0.90321 0.91500 0.93160 0.90272 0.94011 0.98423 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.22 71.24 0.73 -0.40 16 2 C 0.15 2.71 6.82 42.66 0.29 3.00 16 3 C -0.19 -1.92 9.87 22.54 0.22 -1.69 16 4 C 0.14 1.73 11.30 84.78 0.96 2.68 16 5 N -0.50 -11.36 7.72 -189.10 -1.46 -12.82 16 6 C 0.28 8.43 6.66 137.68 0.92 9.35 16 7 C 0.57 21.12 7.05 86.99 0.61 21.74 16 8 O -0.52 -23.46 10.08 -3.64 -0.04 -23.49 16 9 N -0.58 -20.02 2.96 -797.54 -2.36 -22.38 16 10 C 0.09 2.40 6.19 86.36 0.53 2.94 16 11 C -0.11 -2.48 6.08 30.67 0.19 -2.29 16 12 C -0.12 -3.22 5.88 30.62 0.18 -3.04 16 13 C -0.11 -4.24 4.97 30.67 0.15 -4.09 16 14 C 0.15 6.15 2.70 44.97 0.12 6.27 16 15 H 0.05 2.29 7.84 -2.39 -0.02 2.27 16 16 C 0.16 7.82 2.28 45.35 0.10 7.92 16 17 H 0.05 2.57 5.77 -18.50 -0.11 2.46 16 18 C -0.11 -4.70 5.08 31.79 0.16 -4.54 16 19 C -0.14 -6.28 7.09 31.99 0.23 -6.05 16 20 C 0.18 9.85 5.51 86.86 0.48 10.33 16 21 N -0.61 -34.07 2.76 -668.22 -1.84 -35.91 16 22 C -0.23 -13.83 9.73 84.04 0.82 -13.01 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.06 -3.50 5.48 84.86 0.46 -3.03 16 25 N -0.95 -58.73 10.40 21.65 0.23 -58.50 16 26 Si 0.97 47.80 29.55 68.60 2.03 49.83 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 30 N -0.52 -15.12 10.29 -177.25 -1.82 -16.94 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.12 0.38 8.10 -2.38 -0.02 0.36 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.20 0.00 8.06 -2.91 -0.02 -0.03 16 35 H 0.22 0.58 8.06 -2.92 -0.02 0.55 16 36 H 0.11 2.51 4.63 -2.39 -0.01 2.49 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.06 2.42 5.55 -2.38 -0.01 2.41 16 43 H 0.05 2.21 7.96 -2.39 -0.02 2.19 16 44 H 0.08 3.49 5.67 -3.73 -0.02 3.47 16 45 H 0.07 2.72 5.23 -2.39 -0.01 2.71 16 46 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 48 H 0.04 2.53 6.59 -2.39 -0.02 2.52 16 49 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 50 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -81.08 378.99 2.74 -78.34 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.85 Total: 15.82 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 7.16 Total: 26.06 kcal Atomic # 7 Polarization: -139.30 SS G_CDS: -7.26 Total: -146.56 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.04 Total: -23.49 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -81.08 2.74 -78.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025227126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.605 kcal (2) G-P(sol) polarization free energy of solvation -81.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds