Wall clock time and date at job start Wed Apr 1 2020 04:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.32140 * 119.90438 * 2 1 4 4 C 1.32076 * 120.07105 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.06392 * 179.97438 * 4 3 2 6 6 C 1.39443 * 119.87743 * 359.97438 * 4 3 2 7 7 C 1.48145 * 120.09906 * 179.97438 * 6 4 3 8 8 O 1.21515 * 120.00006 * 5.81891 * 7 6 4 9 9 N 1.34779 * 119.99998 * 185.82159 * 7 6 4 10 10 C 1.49210 * 126.05893 * 0.02562 * 9 7 6 11 11 C 1.50344 * 104.86118 * 172.93322 * 10 9 7 12 12 H 1.09002 * 110.04979 * 278.95542 * 11 10 9 13 13 C 1.50999 * 125.57035 * 143.74410 * 11 10 9 14 14 C 1.56399 * 101.59660 * 203.98162 * 13 11 10 15 15 C 1.55936 * 105.78881 * 25.01802 * 14 13 11 16 16 H 1.08999 * 110.49386 * 248.87230 * 15 14 13 17 17 N 1.46495 * 110.49326 * 126.34281 * 15 14 13 18 18 C 1.36939 * 120.00135 * 86.45216 * 17 15 14 19 19 H 1.08001 * 119.99697 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00284 * 179.97438 * 18 17 15 21 21 N 1.31613 * 120.00340 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99755 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46863 * 90.00210 * 22 20 18 24 24 H 1.48504 * 109.46806 * 209.99767 * 22 20 18 25 25 H 1.48496 * 109.47252 * 329.99836 * 22 20 18 26 26 C 1.50338 * 103.80231 * 8.04445 * 15 14 13 27 27 H 1.09001 * 110.55207 * 79.88542 * 26 15 14 28 28 C 1.49702 * 126.05792 * 179.71743 * 9 7 6 29 29 N 1.33003 * 119.80512 * 0.02562 * 6 4 3 30 30 C 1.31802 * 119.92378 * 359.71132 * 29 6 4 31 31 C 1.50701 * 119.93885 * 180.29802 * 30 29 6 32 32 H 1.08998 * 109.47190 * 90.00118 * 1 2 3 33 33 H 1.09005 * 109.47434 * 330.00439 * 1 2 3 34 34 H 1.09000 * 109.47442 * 210.00522 * 1 2 3 35 35 H 1.09003 * 109.46989 * 96.72951 * 5 4 3 36 36 H 1.08997 * 109.47333 * 216.73328 * 5 4 3 37 37 H 1.09003 * 109.46943 * 336.73373 * 5 4 3 38 38 H 1.09007 * 110.36068 * 291.77995 * 10 9 7 39 39 H 1.09003 * 110.36002 * 53.97778 * 10 9 7 40 40 H 1.09003 * 111.00295 * 322.06320 * 13 11 10 41 41 H 1.09001 * 110.99908 * 85.90021 * 13 11 10 42 42 H 1.09001 * 110.18425 * 144.09674 * 14 13 11 43 43 H 1.09002 * 110.18502 * 265.85887 * 14 13 11 44 44 H 0.97006 * 120.00365 * 266.45149 * 17 15 14 45 45 H 0.96993 * 120.00313 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.84219 * 273.05907 * 28 9 7 47 47 H 1.09002 * 110.84189 * 36.67023 * 28 9 7 48 48 H 1.09000 * 109.46817 * 270.26406 * 31 30 29 49 49 H 1.09004 * 109.46858 * 30.25865 * 31 30 29 50 50 H 1.09001 * 109.47440 * 150.26003 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4864 1.1493 -0.0005 5 6 4.2376 2.4558 -0.0011 6 6 4.1846 -0.0578 -0.0005 7 6 5.6660 -0.0592 -0.0017 8 8 6.2747 0.9872 0.1041 9 7 6.3387 -1.2211 -0.1200 10 6 5.7318 -2.5772 -0.2578 11 6 6.8924 -3.4931 -0.5310 12 1 7.1666 -3.4447 -1.5849 13 6 7.0326 -4.9085 -0.0241 14 6 8.5842 -5.1019 -0.0567 15 6 9.1927 -3.6707 0.0576 16 1 9.6704 -3.3832 -0.8790 17 7 10.1531 -3.6084 1.1620 18 6 11.4598 -3.9610 0.9538 19 1 11.7824 -4.2846 -0.0248 20 6 12.3700 -3.9014 2.0002 21 7 13.6260 -4.2399 1.8000 22 14 11.8121 -3.3410 3.6926 23 1 11.3615 -4.5168 4.4798 24 1 12.9428 -2.6803 4.3928 25 1 10.6887 -2.3803 3.5505 26 6 8.0038 -2.7977 0.3487 27 1 7.7343 -2.8575 1.4032 28 6 7.8272 -1.3791 -0.1431 29 7 3.5165 -1.2079 -0.0005 30 6 2.1985 -1.2026 0.0052 31 6 1.4413 -2.5056 0.0120 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3634 0.8900 0.5138 34 1 -0.3634 -0.8899 0.5139 35 1 4.5235 2.7110 1.0194 36 1 5.1325 2.3602 -0.6160 37 1 3.6001 3.2413 -0.4070 38 1 5.2314 -2.8645 0.6670 39 1 5.0283 -2.5951 -1.0902 40 1 6.6488 -4.9993 0.9921 41 1 6.5369 -5.6134 -0.6915 42 1 8.9046 -5.7152 0.7855 43 1 8.8857 -5.5662 -0.9957 44 1 9.8634 -3.3173 2.0409 45 1 14.2621 -4.1979 2.5310 46 1 8.2136 -1.2660 -1.1560 47 1 8.3029 -0.6715 0.5360 48 1 1.2583 -2.8248 -1.0140 49 1 2.0285 -3.2643 0.5294 50 1 0.4895 -2.3700 0.5256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026308929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:18 Heat of formation + Delta-G solvation = 50.549278 kcal Electronic energy + Delta-G solvation = -30626.477637 eV Core-core repulsion = 26654.852979 eV Total energy + Delta-G solvation = -3971.624658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.84145 -40.44866 -38.72747 -35.79428 -35.07694 -34.66475 -33.45188 -31.18562 -30.61656 -30.03684 -29.02205 -28.70225 -26.51439 -25.60400 -24.11295 -23.23612 -22.62669 -22.05562 -20.33005 -19.87691 -19.22913 -18.49689 -17.61789 -17.12133 -16.34175 -16.03260 -15.59350 -15.34265 -15.06478 -14.70093 -14.30431 -14.10131 -14.06532 -13.69812 -13.53156 -13.44555 -13.34537 -13.06945 -12.93925 -12.66974 -12.65744 -12.50952 -12.41841 -12.18684 -11.98259 -11.90015 -11.85962 -11.48946 -11.14875 -11.05118 -10.83679 -10.80151 -10.49881 -10.39956 -10.17346 -10.01220 -9.77376 -9.57125 -9.32021 -9.27513 -8.93555 -8.65738 -7.28248 -5.77842 -3.13688 0.07171 0.68136 2.50956 2.65673 3.37293 3.37600 3.40971 3.45796 3.50395 3.59995 3.94393 4.04288 4.24078 4.53002 4.58455 4.59181 4.81345 4.82334 4.93152 5.00968 5.03021 5.14572 5.24122 5.27082 5.34001 5.39245 5.43927 5.47906 5.50543 5.51800 5.56621 5.63428 5.69672 5.73812 5.82097 5.86198 5.89347 6.01809 6.04004 6.11429 6.15997 6.20993 6.27186 6.36609 6.55400 6.71291 6.82875 6.94834 7.29429 7.42167 7.96073 7.98292 8.41437 9.19273 9.92001 10.11220 11.40408 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.002680 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.534655 B =10446.285017 C =11297.240864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.106 3.894 3 N -0.444 5.444 4 C 0.139 3.861 5 C -0.106 4.106 6 C 0.028 3.972 7 C 0.586 3.414 8 O -0.527 6.527 9 N -0.604 5.604 10 C 0.140 3.860 11 C -0.131 4.131 12 H 0.082 0.918 13 C -0.096 4.096 14 C -0.143 4.143 15 C 0.202 3.798 16 H 0.064 0.936 17 N -0.745 5.745 18 C -0.244 4.244 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.123 4.123 27 H 0.081 0.919 28 C 0.127 3.873 29 N -0.399 5.399 30 C 0.065 3.935 31 C -0.102 4.102 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.659 5.121 -5.923 30.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.037 4.037 3 N -0.160 5.160 4 C -0.001 4.001 5 C -0.163 4.163 6 C -0.113 4.113 7 C 0.373 3.627 8 O -0.405 6.405 9 N -0.337 5.337 10 C 0.019 3.981 11 C -0.151 4.151 12 H 0.101 0.899 13 C -0.135 4.135 14 C -0.184 4.184 15 C 0.092 3.908 16 H 0.082 0.918 17 N -0.387 5.387 18 C -0.374 4.374 19 H 0.109 0.891 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.143 4.143 27 H 0.099 0.901 28 C 0.007 3.993 29 N -0.117 5.117 30 C -0.079 4.079 31 C -0.159 4.159 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.194 0.806 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -29.060 5.718 -5.953 30.210 hybrid contribution -0.310 0.273 1.318 1.381 sum -29.370 5.991 -4.635 30.331 Atomic orbital electron populations 1.20844 0.87433 1.04320 1.03820 1.22429 0.98570 0.88972 0.93693 1.68321 1.07799 1.28837 1.11004 1.22347 0.89709 0.96659 0.91339 1.21058 1.00002 0.90529 1.04718 1.21908 0.95587 0.90174 1.03667 1.17208 0.84737 0.83025 0.77768 1.90761 1.68453 1.30145 1.51099 1.49700 1.07853 1.06277 1.69894 1.21271 0.94375 0.80302 1.02195 1.22298 0.95809 0.96231 1.00753 0.89926 1.21748 0.97692 0.93565 1.00473 1.23760 0.92372 1.00058 1.02166 1.20084 0.87195 0.90979 0.92573 0.91816 1.42869 1.07099 1.80944 1.07785 1.19070 0.83367 1.37146 0.97776 0.89129 1.24668 0.95377 1.01392 0.97588 1.69692 1.02250 1.54343 1.31782 0.86581 0.77655 0.78596 0.85894 1.21141 1.21750 1.20309 1.22609 0.97863 0.93582 1.00244 0.90113 1.21687 0.78230 0.97420 1.01997 1.68425 1.08200 1.28293 1.06734 1.22178 0.90226 0.96924 0.98554 1.20774 0.99297 0.92173 1.03701 0.89498 0.89913 0.89556 0.89455 0.87409 0.90997 0.90852 0.90649 0.91695 0.91988 0.90710 0.92232 0.80560 0.93055 0.90483 0.89711 0.89786 0.89863 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 9.79 36.00 0.35 -0.17 16 2 C 0.11 0.96 6.79 -82.28 -0.56 0.40 16 3 N -0.44 -5.07 10.34 -5.24 -0.05 -5.13 16 4 C 0.14 1.73 6.82 -82.04 -0.56 1.17 16 5 C -0.11 -1.18 8.88 36.01 0.32 -0.86 16 6 C 0.03 0.37 6.71 -82.84 -0.56 -0.19 16 7 C 0.59 8.71 7.81 -12.19 -0.10 8.62 16 8 O -0.53 -8.77 13.66 5.35 0.07 -8.69 16 9 N -0.60 -8.50 3.42 -172.40 -0.59 -9.09 16 10 C 0.14 1.67 5.24 -3.86 -0.02 1.65 16 11 C -0.13 -1.60 2.78 -90.27 -0.25 -1.85 16 12 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.10 -1.17 6.70 -25.91 -0.17 -1.35 16 14 C -0.14 -2.24 6.73 -23.33 -0.16 -2.40 16 15 C 0.20 3.63 3.40 -67.69 -0.23 3.40 16 16 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 17 N -0.74 -17.00 4.92 -53.19 -0.26 -17.26 16 18 C -0.24 -6.70 10.46 -15.06 -0.16 -6.86 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -29.10 13.97 55.49 0.78 -28.33 16 22 Si 0.88 22.11 27.74 -169.99 -4.71 17.39 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 26 C -0.12 -1.86 2.39 -90.18 -0.22 -2.08 16 27 H 0.08 1.31 7.94 -51.93 -0.41 0.89 16 28 C 0.13 1.90 6.81 -3.17 -0.02 1.88 16 29 N -0.40 -4.62 7.12 -5.88 -0.04 -4.66 16 30 C 0.06 0.59 6.79 -82.42 -0.56 0.03 16 31 C -0.10 -0.53 9.78 36.01 0.35 -0.18 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.24 5.93 -51.93 -0.31 -0.07 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.33 5.85 -51.93 -0.30 1.03 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 39 H 0.08 0.84 7.31 -51.93 -0.38 0.46 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.33 7.98 -51.93 -0.41 0.91 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.36 8.25 5.51 -40.82 -0.22 8.02 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.25 5.94 -51.93 -0.31 -0.06 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -33.15 391.70 -9.38 -42.53 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.84 Total: 6.06 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.63 Total: 1.27 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.17 Total: -64.47 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.15 -9.38 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026308929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.078 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds