Wall clock time and date at job start Wed Apr 1 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.32140 * 119.90438 * 2 1 4 4 C 1.32076 * 120.07105 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.06392 * 179.97438 * 4 3 2 6 6 C 1.39443 * 119.87743 * 359.97438 * 4 3 2 7 7 C 1.48145 * 120.09906 * 179.97438 * 6 4 3 8 8 O 1.21515 * 120.00006 * 5.81891 * 7 6 4 9 9 N 1.34779 * 119.99998 * 185.82159 * 7 6 4 10 10 C 1.49210 * 126.05893 * 0.02562 * 9 7 6 11 11 C 1.50344 * 104.86118 * 172.93322 * 10 9 7 12 12 H 1.09002 * 110.04979 * 278.95542 * 11 10 9 13 13 C 1.50999 * 125.57035 * 143.74410 * 11 10 9 14 14 C 1.56399 * 101.59660 * 203.98162 * 13 11 10 15 15 C 1.55936 * 105.78881 * 25.01802 * 14 13 11 16 16 H 1.08999 * 110.49386 * 248.87230 * 15 14 13 17 17 N 1.46495 * 110.49326 * 126.34281 * 15 14 13 18 18 C 1.36939 * 120.00135 * 86.45216 * 17 15 14 19 19 H 1.08001 * 119.99697 * 0.02562 * 18 17 15 20 20 C 1.38815 * 120.00284 * 179.97438 * 18 17 15 21 21 N 1.31613 * 120.00340 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99755 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46863 * 90.00210 * 22 20 18 24 24 H 1.48504 * 109.46806 * 209.99767 * 22 20 18 25 25 H 1.48496 * 109.47252 * 329.99836 * 22 20 18 26 26 C 1.50338 * 103.80231 * 8.04445 * 15 14 13 27 27 H 1.09001 * 110.55207 * 79.88542 * 26 15 14 28 28 C 1.49702 * 126.05792 * 179.71743 * 9 7 6 29 29 N 1.33003 * 119.80512 * 0.02562 * 6 4 3 30 30 C 1.31802 * 119.92378 * 359.71132 * 29 6 4 31 31 C 1.50701 * 119.93885 * 180.29802 * 30 29 6 32 32 H 1.08998 * 109.47190 * 90.00118 * 1 2 3 33 33 H 1.09005 * 109.47434 * 330.00439 * 1 2 3 34 34 H 1.09000 * 109.47442 * 210.00522 * 1 2 3 35 35 H 1.09003 * 109.46989 * 96.72951 * 5 4 3 36 36 H 1.08997 * 109.47333 * 216.73328 * 5 4 3 37 37 H 1.09003 * 109.46943 * 336.73373 * 5 4 3 38 38 H 1.09007 * 110.36068 * 291.77995 * 10 9 7 39 39 H 1.09003 * 110.36002 * 53.97778 * 10 9 7 40 40 H 1.09003 * 111.00295 * 322.06320 * 13 11 10 41 41 H 1.09001 * 110.99908 * 85.90021 * 13 11 10 42 42 H 1.09001 * 110.18425 * 144.09674 * 14 13 11 43 43 H 1.09002 * 110.18502 * 265.85887 * 14 13 11 44 44 H 0.97006 * 120.00365 * 266.45149 * 17 15 14 45 45 H 0.96993 * 120.00313 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.84219 * 273.05907 * 28 9 7 47 47 H 1.09002 * 110.84189 * 36.67023 * 28 9 7 48 48 H 1.09000 * 109.46817 * 270.26406 * 31 30 29 49 49 H 1.09004 * 109.46858 * 30.25865 * 31 30 29 50 50 H 1.09001 * 109.47440 * 150.26003 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4864 1.1493 -0.0005 5 6 4.2376 2.4558 -0.0011 6 6 4.1846 -0.0578 -0.0005 7 6 5.6660 -0.0592 -0.0017 8 8 6.2747 0.9872 0.1041 9 7 6.3387 -1.2211 -0.1200 10 6 5.7318 -2.5772 -0.2578 11 6 6.8924 -3.4931 -0.5310 12 1 7.1666 -3.4447 -1.5849 13 6 7.0326 -4.9085 -0.0241 14 6 8.5842 -5.1019 -0.0567 15 6 9.1927 -3.6707 0.0576 16 1 9.6704 -3.3832 -0.8790 17 7 10.1531 -3.6084 1.1620 18 6 11.4598 -3.9610 0.9538 19 1 11.7824 -4.2846 -0.0248 20 6 12.3700 -3.9014 2.0002 21 7 13.6260 -4.2399 1.8000 22 14 11.8121 -3.3410 3.6926 23 1 11.3615 -4.5168 4.4798 24 1 12.9428 -2.6803 4.3928 25 1 10.6887 -2.3803 3.5505 26 6 8.0038 -2.7977 0.3487 27 1 7.7343 -2.8575 1.4032 28 6 7.8272 -1.3791 -0.1431 29 7 3.5165 -1.2079 -0.0005 30 6 2.1985 -1.2026 0.0052 31 6 1.4413 -2.5056 0.0120 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3634 0.8900 0.5138 34 1 -0.3634 -0.8899 0.5139 35 1 4.5235 2.7110 1.0194 36 1 5.1325 2.3602 -0.6160 37 1 3.6001 3.2413 -0.4070 38 1 5.2314 -2.8645 0.6670 39 1 5.0283 -2.5951 -1.0902 40 1 6.6488 -4.9993 0.9921 41 1 6.5369 -5.6134 -0.6915 42 1 8.9046 -5.7152 0.7855 43 1 8.8857 -5.5662 -0.9957 44 1 9.8634 -3.3173 2.0409 45 1 14.2621 -4.1979 2.5310 46 1 8.2136 -1.2660 -1.1560 47 1 8.3029 -0.6715 0.5360 48 1 1.2583 -2.8248 -1.0140 49 1 2.0285 -3.2643 0.5294 50 1 0.4895 -2.3700 0.5256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026308929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:17 Heat of formation + Delta-G solvation = 28.823672 kcal Electronic energy + Delta-G solvation = -30627.419730 eV Core-core repulsion = 26654.852979 eV Total energy + Delta-G solvation = -3972.566751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.67004 -41.57189 -39.86759 -37.07378 -36.07179 -35.39370 -35.06054 -33.09128 -31.41807 -31.01812 -30.15239 -29.57003 -27.41707 -26.97021 -24.91368 -24.52810 -24.11024 -22.95736 -21.57666 -20.87278 -20.54644 -19.61392 -19.30068 -18.17599 -17.46950 -17.04657 -16.62429 -16.40248 -16.21942 -16.01280 -15.83269 -15.13087 -15.03770 -14.78408 -14.53796 -14.36194 -14.32276 -13.98205 -13.90247 -13.73411 -13.63842 -13.50446 -13.42549 -13.20267 -13.15934 -13.05501 -12.82395 -12.57803 -12.47876 -12.30977 -12.25587 -12.10143 -11.87774 -11.83126 -11.62797 -11.39867 -11.22822 -11.01630 -10.90709 -10.15493 -10.10457 -9.70716 -9.29209 -8.01908 -5.34182 -0.75414 -0.09722 1.36270 1.38454 1.45406 1.51955 1.58997 2.47438 2.51966 2.68925 2.88710 2.93404 3.21923 3.30464 3.44611 3.52735 3.77251 3.84819 3.93303 3.95514 4.15000 4.15401 4.26241 4.41140 4.48117 4.52973 4.54847 4.62321 4.66173 4.67748 4.71002 4.74197 4.75807 4.80465 4.85889 4.90516 4.93569 4.97944 5.07173 5.10005 5.16396 5.21892 5.22967 5.33465 5.48466 5.51410 5.54254 5.80081 6.05637 6.23142 6.27638 6.56643 6.87045 7.08425 7.85615 8.03143 9.19714 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.002680 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.534655 B =10446.285017 C =11297.240864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.110 3.890 3 N -0.461 5.461 4 C 0.125 3.875 5 C -0.099 4.099 6 C 0.003 3.997 7 C 0.580 3.420 8 O -0.557 6.557 9 N -0.606 5.606 10 C 0.149 3.851 11 C -0.110 4.110 12 H 0.090 0.910 13 C -0.081 4.081 14 C -0.138 4.138 15 C 0.192 3.808 16 H 0.052 0.948 17 N -0.750 5.750 18 C -0.222 4.222 19 H 0.061 0.939 20 C -0.064 4.064 21 N -0.984 5.984 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.259 1.259 26 C -0.123 4.123 27 H 0.074 0.926 28 C 0.128 3.872 29 N -0.409 5.409 30 C 0.066 3.934 31 C -0.100 4.100 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.363 0.637 45 H 0.256 0.744 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.082 0.918 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.502 4.128 -5.964 35.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.034 4.034 3 N -0.177 5.177 4 C -0.014 4.014 5 C -0.156 4.156 6 C -0.136 4.136 7 C 0.368 3.632 8 O -0.436 6.436 9 N -0.339 5.339 10 C 0.028 3.972 11 C -0.130 4.130 12 H 0.108 0.892 13 C -0.119 4.119 14 C -0.179 4.179 15 C 0.084 3.916 16 H 0.070 0.930 17 N -0.392 5.392 18 C -0.353 4.353 19 H 0.079 0.921 20 C -0.255 4.255 21 N -0.635 5.635 22 Si 0.778 3.222 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.184 1.184 26 C -0.143 4.143 27 H 0.092 0.908 28 C 0.007 3.993 29 N -0.126 5.126 30 C -0.079 4.079 31 C -0.157 4.157 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.196 0.804 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.120 0.880 49 H 0.101 0.899 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -33.952 4.727 -6.022 34.804 hybrid contribution 1.047 0.550 1.201 1.685 sum -32.904 5.277 -4.821 33.672 Atomic orbital electron populations 1.21044 0.84168 1.05745 1.05299 1.23225 1.00593 0.88331 0.91248 1.68387 1.07192 1.30237 1.11856 1.22396 0.90403 0.96614 0.91999 1.20937 0.99581 0.90988 1.04133 1.21590 0.94469 0.91186 1.06339 1.17581 0.85744 0.82700 0.77157 1.90737 1.69370 1.31149 1.52383 1.49727 1.07269 1.07087 1.69786 1.21305 0.94094 0.78759 1.03008 1.22267 0.94350 0.95902 1.00457 0.89163 1.21662 0.94587 0.93905 1.01777 1.23584 0.95247 0.97470 1.01567 1.20339 0.87255 0.93484 0.90553 0.92956 1.42907 1.06213 1.80899 1.09220 1.19038 0.85294 1.34752 0.96252 0.92140 1.25427 0.95480 1.02855 1.01755 1.69864 1.03697 1.57010 1.32888 0.85486 0.77324 0.78530 0.80878 1.20332 1.22589 1.18369 1.22380 0.97602 0.93816 1.00512 0.90760 1.21566 0.79259 0.96813 1.01660 1.68394 1.09492 1.27475 1.07259 1.22926 0.89537 0.98759 0.96674 1.20960 0.99842 0.89771 1.05160 0.87690 0.89991 0.86639 0.89960 0.89049 0.89655 0.90347 0.89239 0.90996 0.88903 0.92829 0.91627 0.80395 0.93476 0.90089 0.91924 0.88048 0.89924 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.79 71.23 0.70 0.11 16 2 C 0.11 1.67 6.79 42.63 0.29 1.96 16 3 N -0.46 -9.87 10.34 -170.48 -1.76 -11.64 16 4 C 0.12 3.06 6.82 42.81 0.29 3.36 16 5 C -0.10 -2.29 8.88 71.24 0.63 -1.66 16 6 C 0.00 0.08 6.71 41.89 0.28 0.36 16 7 C 0.58 17.46 7.81 86.87 0.68 18.14 16 8 O -0.56 -19.36 13.66 -3.76 -0.05 -19.41 16 9 N -0.61 -16.73 3.42 -817.64 -2.80 -19.53 16 10 C 0.15 3.18 5.24 85.00 0.45 3.63 16 11 C -0.11 -2.40 2.78 -10.57 -0.03 -2.43 16 12 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 13 C -0.08 -1.70 6.70 31.13 0.21 -1.49 16 14 C -0.14 -4.15 6.73 32.79 0.22 -3.93 16 15 C 0.19 6.87 3.40 45.15 0.15 7.03 16 16 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 17 N -0.75 -34.44 4.92 -322.20 -1.59 -36.03 16 18 C -0.22 -12.54 10.46 84.03 0.88 -11.66 16 19 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 20 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 21 N -0.98 -63.47 13.97 21.65 0.30 -63.17 16 22 Si 0.95 46.47 27.74 68.60 1.90 48.37 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 25 H -0.26 -11.70 6.52 99.48 0.65 -11.05 16 26 C -0.12 -3.63 2.39 -10.51 -0.03 -3.65 16 27 H 0.07 2.32 7.94 -2.39 -0.02 2.30 16 28 C 0.13 3.86 6.81 85.16 0.58 4.44 16 29 N -0.41 -8.60 7.12 -172.53 -1.23 -9.83 16 30 C 0.07 0.99 6.79 42.68 0.29 1.28 16 31 C -0.10 -0.57 9.78 71.24 0.70 0.13 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.12 -0.01 5.93 -2.39 -0.01 -0.03 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 2.41 5.85 -2.39 -0.01 2.39 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.64 7.82 -2.38 -0.02 1.62 16 39 H 0.09 1.72 7.31 -2.39 -0.02 1.70 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.85 7.98 -2.39 -0.02 1.84 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.36 16.39 5.51 -92.70 -0.51 15.88 16 45 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.06 2.14 8.09 -2.39 -0.02 2.12 16 48 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.11 0.02 5.94 -2.39 -0.01 0.00 16 Total: -1.00 -75.93 391.70 1.92 -74.00 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.39 Total: 24.95 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.76 Total: 12.27 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -7.07 Total: -140.19 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Total: -75.93 1.92 -74.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026308929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.827 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds