Wall clock time and date at job start Wed Apr 1 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34856 * 125.96662 * 2 1 4 4 N 1.36315 * 106.68522 * 180.02562 * 3 2 1 5 5 C 1.35417 * 107.40598 * 359.93981 * 4 3 2 6 6 N 1.30089 * 108.62438 * 0.07535 * 5 4 3 7 7 C 1.51035 * 123.98521 * 180.11153 * 5 4 3 8 8 C 1.53395 * 108.21468 * 15.91884 * 7 5 4 9 9 H 1.08996 * 109.50677 * 71.16354 * 8 7 5 10 10 C 1.50698 * 109.51183 * 191.26109 * 8 7 5 11 11 O 1.21278 * 120.00139 * 96.20029 * 10 8 7 12 12 N 1.34773 * 120.00051 * 276.19971 * 10 8 7 13 13 C 1.47168 * 120.71414 * 185.57404 * 12 10 8 14 14 C 1.53883 * 108.02982 * 132.75693 * 13 12 10 15 15 H 1.08994 * 112.09422 * 181.91407 * 14 13 12 16 16 C 1.54541 * 107.83354 * 305.87518 * 14 13 12 17 17 C 1.55861 * 104.09834 * 89.27963 * 16 14 13 18 18 C 1.54549 * 104.99792 * 359.97438 * 17 16 14 19 19 H 1.08992 * 112.18173 * 146.42273 * 18 17 16 20 20 C 1.47170 * 120.70954 * 5.29934 * 12 10 8 21 21 N 1.48310 * 107.20926 * 58.36688 * 14 13 12 22 22 C 1.36933 * 128.07687 * 106.69538 * 21 14 13 23 23 H 1.07999 * 120.00027 * 15.63653 * 22 21 14 24 24 C 1.38817 * 119.99737 * 195.62951 * 22 21 14 25 25 N 1.31615 * 120.00498 * 9.06402 * 24 22 21 26 26 Si 1.86808 * 119.99690 * 189.05880 * 24 22 21 27 27 H 1.48503 * 109.46735 * 90.00474 * 26 24 22 28 28 H 1.48494 * 109.47088 * 210.00295 * 26 24 22 29 29 H 1.48494 * 109.46999 * 330.00429 * 26 24 22 30 30 C 1.53152 * 109.23933 * 311.18840 * 8 7 5 31 31 C 1.46480 * 127.77441 * 179.67942 * 4 3 2 32 32 H 1.08996 * 109.47259 * 89.99653 * 1 2 3 33 33 H 1.08996 * 109.47478 * 210.00434 * 1 2 3 34 34 H 1.08997 * 109.46736 * 330.00167 * 1 2 3 35 35 H 1.07995 * 126.65743 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.71874 * 135.60423 * 7 5 4 37 37 H 1.09007 * 109.71479 * 256.24275 * 7 5 4 38 38 H 1.08997 * 109.75177 * 252.39764 * 13 12 10 39 39 H 1.09002 * 109.74637 * 13.07921 * 13 12 10 40 40 H 1.09001 * 110.36410 * 207.91718 * 16 14 13 41 41 H 1.09005 * 110.36472 * 330.23084 * 16 14 13 42 42 H 1.09003 * 110.28386 * 241.10048 * 17 16 14 43 43 H 1.08997 * 110.30256 * 118.88148 * 17 16 14 44 44 H 1.09005 * 109.74523 * 346.87349 * 20 12 10 45 45 H 1.09000 * 109.74865 * 107.60144 * 20 12 10 46 46 H 0.96996 * 120.00252 * 179.97438 * 25 24 22 47 47 H 1.08993 * 109.46917 * 189.49283 * 30 8 7 48 48 H 1.09004 * 109.46863 * 309.48302 * 30 8 7 49 49 H 1.09006 * 109.57779 * 316.94170 * 31 4 3 50 50 H 1.08992 * 109.58479 * 77.34546 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6413 -0.0006 5 6 3.5414 -0.7121 0.0004 6 7 2.2957 -1.0870 0.0000 7 6 4.7654 -1.5969 0.0026 8 6 5.9744 -0.7418 0.4031 9 1 5.9068 -0.4890 1.4612 10 6 7.2433 -1.5145 0.1502 11 8 7.8595 -1.3477 -0.8809 12 7 7.6932 -2.3909 1.0700 13 6 8.9909 -3.0629 0.8962 14 6 9.7617 -2.9610 2.2242 15 1 10.7521 -3.4112 2.1589 16 6 9.8241 -1.4689 2.6219 17 6 8.5338 -1.2471 3.4675 18 6 7.8298 -2.6228 3.4913 19 1 7.3046 -2.8001 4.4298 20 6 6.9001 -2.6917 2.2726 21 7 8.9236 -3.5993 3.2681 22 6 9.1149 -4.8082 3.8821 23 1 10.0726 -5.3028 3.8144 24 6 8.0778 -5.3980 4.5918 25 7 6.8650 -4.8905 4.5286 26 14 8.4035 -6.9120 5.6365 27 1 8.7754 -6.4935 7.0120 28 1 7.1790 -7.7504 5.6883 29 1 9.5149 -7.6953 5.0398 30 6 5.9828 0.5424 -0.4312 31 6 4.8149 1.4379 -0.0073 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.9765 2.1221 0.0004 36 1 4.6331 -2.4059 0.7210 37 1 4.9217 -2.0109 -0.9936 38 1 8.8319 -4.1108 0.6420 39 1 9.5559 -2.5732 0.1030 40 1 10.7130 -1.2731 3.2216 41 1 9.8192 -0.8387 1.7324 42 1 7.8946 -0.5023 2.9934 43 1 8.7935 -0.9363 4.4794 44 1 6.1000 -1.9591 2.3789 45 1 6.4758 -3.6926 2.1931 46 1 6.1403 -5.3028 5.0242 47 1 6.9227 1.0715 -0.2743 48 1 5.8796 0.2906 -1.4867 49 1 4.7118 2.2628 -0.7124 50 1 5.0014 1.8304 0.9923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029358752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:21 Heat of formation + Delta-G solvation = 58.954448 kcal Electronic energy + Delta-G solvation = -31880.471789 eV Core-core repulsion = 27909.211607 eV Total energy + Delta-G solvation = -3971.260183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.39203 -40.25384 -38.21019 -36.25373 -33.90149 -33.28935 -32.39097 -31.61256 -30.68990 -29.28388 -29.01436 -27.44040 -26.13479 -24.30580 -23.98877 -23.66626 -22.59623 -20.51983 -19.82547 -19.66858 -19.07263 -18.50387 -17.28127 -16.94645 -16.07673 -15.97237 -15.57873 -15.23072 -14.66689 -14.56415 -14.19610 -14.13544 -13.88358 -13.63737 -13.40897 -13.21083 -13.09754 -13.00496 -12.82811 -12.47179 -12.37176 -11.95675 -11.83092 -11.76618 -11.69581 -11.67988 -11.36447 -11.18642 -10.99179 -10.87469 -10.81929 -10.39198 -10.09531 -9.94319 -9.90404 -9.67351 -9.65151 -9.52179 -9.40803 -8.81651 -8.19928 -8.13392 -6.90378 -5.90507 -3.25402 2.00451 2.70344 2.90183 3.09040 3.33181 3.38846 3.40976 3.42255 4.20974 4.34360 4.37614 4.46374 4.51846 4.85503 4.96397 5.01037 5.05511 5.11696 5.20686 5.26600 5.28063 5.33095 5.56117 5.60522 5.60873 5.65426 5.66311 5.73479 5.75459 5.83116 5.88860 5.92278 6.00097 6.01927 6.05486 6.22117 6.30583 6.33441 6.44206 6.53866 6.56431 6.66191 6.77949 6.80557 6.89773 7.14153 7.18723 7.39489 7.60443 7.98437 8.07592 8.14108 8.55998 9.00122 9.62141 10.38150 11.23072 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.003420 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.179413 B = 8184.400856 C = 9542.877847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.006 4.006 3 C -0.059 4.059 4 N -0.456 5.456 5 C 0.222 3.778 6 N -0.484 5.484 7 C -0.023 4.023 8 C -0.111 4.111 9 H 0.101 0.899 10 C 0.516 3.484 11 O -0.561 6.561 12 N -0.585 5.585 13 C 0.102 3.898 14 C 0.133 3.867 15 H 0.078 0.922 16 C -0.124 4.124 17 C -0.135 4.135 18 C 0.167 3.833 19 H 0.120 0.880 20 C 0.100 3.900 21 N -0.583 5.583 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.001 4.001 25 N -0.915 5.915 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C -0.114 4.114 31 C 0.105 3.895 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.256 0.744 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 14.245 -7.048 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.192 4.192 4 N -0.139 5.139 5 C -0.041 4.041 6 N -0.204 5.204 7 C -0.062 4.062 8 C -0.133 4.133 9 H 0.119 0.881 10 C 0.303 3.697 11 O -0.441 6.441 12 N -0.316 5.316 13 C -0.022 4.022 14 C 0.025 3.975 15 H 0.096 0.904 16 C -0.164 4.164 17 C -0.175 4.175 18 C 0.060 3.940 19 H 0.137 0.863 20 C -0.024 4.024 21 N -0.304 5.304 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.198 4.198 25 N -0.561 5.561 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.152 4.152 31 C -0.018 4.018 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.189 0.811 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.372 13.382 -7.401 16.208 hybrid contribution 0.284 0.138 0.618 0.694 sum -5.088 13.520 -6.783 15.959 Atomic orbital electron populations 1.19982 0.87826 1.02490 1.01889 1.20795 0.96422 0.88364 1.07914 1.22243 0.82915 1.00236 1.13770 1.45372 1.06504 1.07460 1.54557 1.23110 0.94643 0.81461 1.04903 1.69970 0.99662 1.30318 1.20431 1.20103 0.85819 0.95689 1.04583 1.21401 0.93874 0.95726 1.02291 0.88103 1.20091 0.85947 0.80186 0.83487 1.90639 1.59552 1.67566 1.26389 1.48223 1.20572 1.40968 1.21800 1.22387 0.83911 0.96753 0.99148 1.21959 0.94720 0.92436 0.88409 0.90439 1.22748 0.97759 0.97186 0.98672 1.22928 0.96833 0.99040 0.98672 1.21778 0.89508 0.85472 0.97282 0.86295 1.22619 0.93516 1.01388 0.84836 1.45137 1.26340 1.17681 1.41235 1.19012 0.96328 0.94307 1.25831 0.90545 1.24818 0.94909 0.98662 1.01456 1.69796 0.99419 1.42116 1.44744 0.86122 0.77065 0.82209 0.80346 1.21590 1.21662 1.20658 1.21685 0.97619 0.94559 1.01292 1.22016 0.82127 0.94308 1.03310 0.91718 0.91219 0.91586 0.81093 0.87679 0.88807 0.91856 0.90804 0.92645 0.92685 0.93395 0.92708 0.92074 0.89467 0.93415 0.88720 0.89768 0.88960 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.42 36.00 0.38 -0.26 16 2 C -0.01 -0.08 7.10 -82.71 -0.59 -0.66 16 3 C -0.06 -0.67 11.55 -16.76 -0.19 -0.86 16 4 N -0.46 -5.47 3.14 -113.82 -0.36 -5.83 16 5 C 0.22 3.22 7.65 -155.25 -1.19 2.03 16 6 N -0.48 -7.82 11.24 -6.88 -0.08 -7.89 16 7 C -0.02 -0.32 5.47 -27.51 -0.15 -0.47 16 8 C -0.11 -1.46 1.69 -91.49 -0.15 -1.61 16 9 H 0.10 1.29 6.46 -51.93 -0.34 0.95 16 10 C 0.52 8.48 6.79 -10.99 -0.07 8.40 16 11 O -0.56 -10.57 15.75 5.56 0.09 -10.48 16 12 N -0.59 -10.35 2.27 -171.80 -0.39 -10.74 16 13 C 0.10 1.90 5.87 -3.22 -0.02 1.88 16 14 C 0.13 2.54 4.27 -65.66 -0.28 2.26 16 15 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 16 C -0.12 -2.11 6.31 -24.39 -0.15 -2.26 16 17 C -0.14 -2.36 6.22 -24.39 -0.15 -2.51 16 18 C 0.17 3.46 3.11 -65.89 -0.20 3.26 16 19 H 0.12 2.83 6.40 -51.93 -0.33 2.50 16 20 C 0.10 1.88 5.16 -3.45 -0.02 1.86 16 21 N -0.58 -13.21 2.81 -152.85 -0.43 -13.64 16 22 C -0.23 -5.75 10.37 -15.06 -0.16 -5.91 16 23 H 0.08 1.91 7.84 -52.49 -0.41 1.50 16 24 C 0.00 -0.03 5.42 -17.43 -0.09 -0.13 16 25 N -0.91 -24.03 10.39 55.49 0.58 -23.46 16 26 Si 0.91 20.80 29.56 -169.99 -5.03 15.78 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 C -0.11 -1.22 4.61 -26.58 -0.12 -1.34 16 31 C 0.10 0.93 6.98 -3.98 -0.03 0.90 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.10 1.55 7.36 -51.93 -0.38 1.17 16 37 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.32 7.16 -51.93 -0.37 0.94 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.89 7.84 -51.93 -0.41 0.48 16 42 H 0.05 0.75 7.83 -51.93 -0.41 0.34 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.01 5.23 -51.93 -0.27 0.74 16 45 H 0.09 1.94 7.78 -51.93 -0.40 1.54 16 46 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 47 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 48 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -30.24 383.35 -10.99 -41.23 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.95 Total: 4.67 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -3.20 Total: 4.58 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.68 Total: -61.56 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.24 -10.99 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029358752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.185 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds