Wall clock time and date at job start Wed Apr 1 2020 03:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34856 * 125.96662 * 2 1 4 4 N 1.36315 * 106.68522 * 180.02562 * 3 2 1 5 5 C 1.35417 * 107.40598 * 359.93981 * 4 3 2 6 6 N 1.30089 * 108.62438 * 0.07535 * 5 4 3 7 7 C 1.51035 * 123.98521 * 180.11153 * 5 4 3 8 8 C 1.53395 * 108.21468 * 15.91884 * 7 5 4 9 9 H 1.08996 * 109.50677 * 71.16354 * 8 7 5 10 10 C 1.50698 * 109.51183 * 191.26109 * 8 7 5 11 11 O 1.21278 * 120.00139 * 96.20029 * 10 8 7 12 12 N 1.34773 * 120.00051 * 276.19971 * 10 8 7 13 13 C 1.47168 * 120.71414 * 185.57404 * 12 10 8 14 14 C 1.53883 * 108.02982 * 132.75693 * 13 12 10 15 15 H 1.08994 * 112.09422 * 181.91407 * 14 13 12 16 16 C 1.54541 * 107.83354 * 305.87518 * 14 13 12 17 17 C 1.55861 * 104.09834 * 89.27963 * 16 14 13 18 18 C 1.54549 * 104.99792 * 359.97438 * 17 16 14 19 19 H 1.08992 * 112.18173 * 146.42273 * 18 17 16 20 20 C 1.47170 * 120.70954 * 5.29934 * 12 10 8 21 21 N 1.48310 * 107.20926 * 58.36688 * 14 13 12 22 22 C 1.36933 * 128.07687 * 106.69538 * 21 14 13 23 23 H 1.07999 * 120.00027 * 15.63653 * 22 21 14 24 24 C 1.38817 * 119.99737 * 195.62951 * 22 21 14 25 25 N 1.31615 * 120.00498 * 9.06402 * 24 22 21 26 26 Si 1.86808 * 119.99690 * 189.05880 * 24 22 21 27 27 H 1.48503 * 109.46735 * 90.00474 * 26 24 22 28 28 H 1.48494 * 109.47088 * 210.00295 * 26 24 22 29 29 H 1.48494 * 109.46999 * 330.00429 * 26 24 22 30 30 C 1.53152 * 109.23933 * 311.18840 * 8 7 5 31 31 C 1.46480 * 127.77441 * 179.67942 * 4 3 2 32 32 H 1.08996 * 109.47259 * 89.99653 * 1 2 3 33 33 H 1.08996 * 109.47478 * 210.00434 * 1 2 3 34 34 H 1.08997 * 109.46736 * 330.00167 * 1 2 3 35 35 H 1.07995 * 126.65743 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.71874 * 135.60423 * 7 5 4 37 37 H 1.09007 * 109.71479 * 256.24275 * 7 5 4 38 38 H 1.08997 * 109.75177 * 252.39764 * 13 12 10 39 39 H 1.09002 * 109.74637 * 13.07921 * 13 12 10 40 40 H 1.09001 * 110.36410 * 207.91718 * 16 14 13 41 41 H 1.09005 * 110.36472 * 330.23084 * 16 14 13 42 42 H 1.09003 * 110.28386 * 241.10048 * 17 16 14 43 43 H 1.08997 * 110.30256 * 118.88148 * 17 16 14 44 44 H 1.09005 * 109.74523 * 346.87349 * 20 12 10 45 45 H 1.09000 * 109.74865 * 107.60144 * 20 12 10 46 46 H 0.96996 * 120.00252 * 179.97438 * 25 24 22 47 47 H 1.08993 * 109.46917 * 189.49283 * 30 8 7 48 48 H 1.09004 * 109.46863 * 309.48302 * 30 8 7 49 49 H 1.09006 * 109.57779 * 316.94170 * 31 4 3 50 50 H 1.08992 * 109.58479 * 77.34546 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6413 -0.0006 5 6 3.5414 -0.7121 0.0004 6 7 2.2957 -1.0870 0.0000 7 6 4.7654 -1.5969 0.0026 8 6 5.9744 -0.7418 0.4031 9 1 5.9068 -0.4890 1.4612 10 6 7.2433 -1.5145 0.1502 11 8 7.8595 -1.3477 -0.8809 12 7 7.6932 -2.3909 1.0700 13 6 8.9909 -3.0629 0.8962 14 6 9.7617 -2.9610 2.2242 15 1 10.7521 -3.4112 2.1589 16 6 9.8241 -1.4689 2.6219 17 6 8.5338 -1.2471 3.4675 18 6 7.8298 -2.6228 3.4913 19 1 7.3046 -2.8001 4.4298 20 6 6.9001 -2.6917 2.2726 21 7 8.9236 -3.5993 3.2681 22 6 9.1149 -4.8082 3.8821 23 1 10.0726 -5.3028 3.8144 24 6 8.0778 -5.3980 4.5918 25 7 6.8650 -4.8905 4.5286 26 14 8.4035 -6.9120 5.6365 27 1 8.7754 -6.4935 7.0120 28 1 7.1790 -7.7504 5.6883 29 1 9.5149 -7.6953 5.0398 30 6 5.9828 0.5424 -0.4312 31 6 4.8149 1.4379 -0.0073 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.9765 2.1221 0.0004 36 1 4.6331 -2.4059 0.7210 37 1 4.9217 -2.0109 -0.9936 38 1 8.8319 -4.1108 0.6420 39 1 9.5559 -2.5732 0.1030 40 1 10.7130 -1.2731 3.2216 41 1 9.8192 -0.8387 1.7324 42 1 7.8946 -0.5023 2.9934 43 1 8.7935 -0.9363 4.4794 44 1 6.1000 -1.9591 2.3789 45 1 6.4758 -3.6926 2.1931 46 1 6.1403 -5.3028 5.0242 47 1 6.9227 1.0715 -0.2743 48 1 5.8796 0.2906 -1.4867 49 1 4.7118 2.2628 -0.7124 50 1 5.0014 1.8304 0.9923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029358752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:19 Heat of formation + Delta-G solvation = 43.499464 kcal Electronic energy + Delta-G solvation = -31881.141968 eV Core-core repulsion = 27909.211607 eV Total energy + Delta-G solvation = -3971.930361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.33889 -41.68231 -39.63502 -37.30752 -35.43646 -34.52909 -33.98231 -32.51453 -32.17196 -31.00745 -29.98842 -28.52225 -27.53189 -25.73785 -25.42434 -24.89732 -23.72096 -21.59148 -21.32018 -20.94855 -20.27531 -19.92845 -18.69927 -17.92569 -17.54946 -17.15498 -16.92384 -16.64165 -16.26002 -15.72771 -15.54842 -15.20076 -15.06335 -14.73113 -14.68938 -14.61005 -14.43153 -14.38568 -13.85143 -13.55634 -13.48468 -13.32186 -13.16885 -13.12629 -12.94769 -12.79627 -12.72550 -12.61223 -12.56420 -12.22766 -12.11226 -11.93594 -11.79871 -11.48497 -11.42513 -11.14105 -10.94301 -10.87362 -10.55896 -10.46091 -9.73009 -9.11063 -8.69398 -7.85643 -5.19851 1.08828 1.48769 1.50667 1.55961 1.57638 1.86933 2.04260 2.09734 2.51191 3.14417 3.34654 3.44008 3.47107 3.51784 3.56097 3.93333 4.02630 4.08416 4.10098 4.14869 4.24601 4.26359 4.33531 4.35035 4.43258 4.46356 4.51607 4.55753 4.61303 4.71236 4.75105 4.82034 4.85344 4.92714 4.99037 5.02411 5.04442 5.06582 5.10601 5.16024 5.18301 5.33974 5.37912 5.39870 5.55736 5.62494 5.83196 5.90847 6.24091 6.24688 6.55813 7.08784 7.16523 7.18307 7.73307 8.52137 9.25864 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.003420 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.179413 B = 8184.400856 C = 9542.877847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.041 4.041 3 C -0.040 4.040 4 N -0.452 5.452 5 C 0.196 3.804 6 N -0.528 5.528 7 C -0.016 4.016 8 C -0.100 4.100 9 H 0.110 0.890 10 C 0.520 3.480 11 O -0.580 6.580 12 N -0.588 5.588 13 C 0.108 3.892 14 C 0.128 3.872 15 H 0.081 0.919 16 C -0.112 4.112 17 C -0.126 4.126 18 C 0.162 3.838 19 H 0.085 0.915 20 C 0.119 3.881 21 N -0.604 5.604 22 C -0.234 4.234 23 H 0.074 0.926 24 C -0.049 4.049 25 N -0.932 5.932 26 Si 0.967 3.033 27 H -0.289 1.289 28 H -0.299 1.299 29 H -0.275 1.275 30 C -0.108 4.108 31 C 0.105 3.895 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.214 0.786 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.248 0.752 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.125 0.875 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 17.735 -7.443 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.169 4.169 3 C -0.174 4.174 4 N -0.135 5.135 5 C -0.067 4.067 6 N -0.249 5.249 7 C -0.055 4.055 8 C -0.122 4.122 9 H 0.128 0.872 10 C 0.309 3.691 11 O -0.461 6.461 12 N -0.318 5.318 13 C -0.017 4.017 14 C 0.021 3.979 15 H 0.099 0.901 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.054 3.946 19 H 0.103 0.897 20 C -0.005 4.005 21 N -0.326 5.326 22 C -0.363 4.363 23 H 0.092 0.908 24 C -0.244 4.244 25 N -0.580 5.580 26 Si 0.797 3.203 27 H -0.216 1.216 28 H -0.226 1.226 29 H -0.201 1.201 30 C -0.146 4.146 31 C -0.016 4.016 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.127 0.873 48 H 0.090 0.910 49 H 0.143 0.857 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.184 16.902 -7.815 19.329 hybrid contribution 0.233 -0.952 0.662 1.183 sum -4.951 15.949 -7.153 18.168 Atomic orbital electron populations 1.20042 0.86113 1.03106 1.02555 1.21420 0.97915 0.88434 1.09179 1.22878 0.82117 1.01480 1.10906 1.45586 1.07833 1.06708 1.53363 1.22937 0.94123 0.82809 1.06786 1.69890 1.00949 1.32568 1.21504 1.19919 0.86667 0.95550 1.03388 1.21362 0.91206 0.96246 1.03391 0.87180 1.20601 0.86513 0.79486 0.82497 1.90631 1.60444 1.68096 1.26968 1.48195 1.20284 1.41454 1.21874 1.22218 0.84569 0.95665 0.99212 1.22140 0.94355 0.93816 0.87616 0.90081 1.22653 0.97886 0.95285 0.99252 1.22826 0.97057 0.97222 0.99361 1.21724 0.89453 0.87050 0.96349 0.89713 1.22220 0.93647 0.99852 0.84767 1.45326 1.27510 1.17469 1.42265 1.19244 0.96135 0.95373 1.25566 0.90806 1.25430 0.94986 1.01033 1.02915 1.69962 0.99698 1.42926 1.45386 0.85261 0.76459 0.79675 0.78948 1.21593 1.22572 1.20067 1.21667 0.99408 0.93507 1.00004 1.22284 0.79811 0.93947 1.05536 0.90990 0.92648 0.88907 0.76969 0.89585 0.89938 0.94370 0.89640 0.91528 0.91158 0.90936 0.92456 0.89722 0.93688 0.94258 0.87283 0.90967 0.85712 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.42 71.23 0.74 -0.37 16 2 C -0.04 -1.04 7.10 41.40 0.29 -0.74 16 3 C -0.04 -0.78 11.55 83.22 0.96 0.18 16 4 N -0.45 -9.55 3.14 -514.02 -1.61 -11.16 16 5 C 0.20 5.58 7.65 138.23 1.06 6.64 16 6 N -0.53 -17.15 11.24 -175.69 -1.98 -19.12 16 7 C -0.02 -0.44 5.47 30.09 0.16 -0.28 16 8 C -0.10 -2.47 1.69 -11.36 -0.02 -2.49 16 9 H 0.11 2.53 6.46 -2.39 -0.02 2.51 16 10 C 0.52 16.49 6.79 87.66 0.59 17.09 16 11 O -0.58 -21.04 15.75 -3.02 -0.05 -21.08 16 12 N -0.59 -20.61 2.27 -815.85 -1.85 -22.46 16 13 C 0.11 4.00 5.87 86.55 0.51 4.51 16 14 C 0.13 4.81 4.27 45.47 0.19 5.01 16 15 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 16 C -0.11 -3.51 6.31 32.11 0.20 -3.31 16 17 C -0.13 -4.12 6.22 32.11 0.20 -3.92 16 18 C 0.16 6.73 3.11 45.31 0.14 6.87 16 19 H 0.08 4.15 6.40 -2.39 -0.02 4.14 16 20 C 0.12 4.56 5.16 86.40 0.45 5.00 16 21 N -0.60 -27.76 2.81 -637.51 -1.79 -29.55 16 22 C -0.23 -12.14 10.37 84.04 0.87 -11.27 16 23 H 0.07 3.76 7.84 -2.91 -0.02 3.74 16 24 C -0.05 -2.58 5.42 84.86 0.46 -2.12 16 25 N -0.93 -50.90 10.39 21.65 0.23 -50.68 16 26 Si 0.97 43.81 29.56 68.60 2.03 45.84 16 27 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 30 C -0.11 -1.98 4.61 30.69 0.14 -1.84 16 31 C 0.10 1.40 6.98 86.43 0.60 2.00 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.09 2.70 7.36 -2.39 -0.02 2.68 16 37 H 0.08 2.44 8.11 -2.38 -0.02 2.42 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 2.96 7.16 -2.39 -0.02 2.95 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 2.02 7.84 -2.38 -0.02 2.00 16 42 H 0.07 2.02 7.83 -2.39 -0.02 2.00 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.79 5.23 -2.38 -0.01 2.78 16 45 H 0.04 2.11 7.78 -2.39 -0.02 2.09 16 46 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 47 H 0.11 1.75 8.11 -2.39 -0.02 1.73 16 48 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 49 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -68.50 383.35 3.48 -65.02 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.94 Total: 22.24 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 7.56 Total: 20.96 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -7.00 Total: -132.97 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.50 3.48 -65.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029358752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.524 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds