Wall clock time and date at job start Wed Apr 1 2020 03:01:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.32163 * 120.53407 * 2 1
4 4 C 1.31863 * 120.96453 * 180.02562 * 3 2 1
5 5 C 1.50698 * 118.95021 * 180.02562 * 4 3 2
6 6 C 1.52997 * 109.47306 * 119.99785 * 5 4 3
7 7 C 1.53005 * 109.46841 * 239.99756 * 5 4 3
8 8 N 1.31884 * 122.09556 * 0.27486 * 4 3 2
9 9 C 1.32136 * 120.96367 * 359.44162 * 8 4 3
10 10 C 1.39928 * 120.53695 * 180.02562 * 2 1 3
11 11 C 1.47823 * 120.94135 * 0.02562 * 10 2 1
12 12 O 1.21554 * 119.99813 * 305.35578 * 11 10 2
13 13 N 1.34776 * 120.00323 * 125.36017 * 11 10 2
14 14 C 1.47160 * 120.70938 * 184.00412 * 13 11 10
15 15 C 1.53892 * 108.02323 * 132.75687 * 14 13 11
16 16 H 1.09010 * 112.09301 * 181.91899 * 15 14 13
17 17 C 1.54547 * 107.83104 * 306.50371 * 15 14 13
18 18 C 1.54280 * 104.84839 * 89.07972 * 17 15 14
19 19 C 1.54546 * 104.84556 * 359.97438 * 18 17 15
20 20 H 1.09004 * 112.17795 * 146.41516 * 19 18 17
21 21 C 1.47164 * 120.70733 * 3.72526 * 13 11 10
22 22 N 1.48300 * 107.21160 * 58.36594 * 15 14 13
23 23 C 1.36943 * 128.07995 * 106.66409 * 22 15 14
24 24 H 1.08008 * 119.99110 * 24.15036 * 23 22 15
25 25 C 1.38807 * 120.00104 * 204.14958 * 23 22 15
26 26 N 1.31616 * 120.00295 * 5.26699 * 25 23 22
27 27 Si 1.86802 * 119.99668 * 185.26163 * 25 23 22
28 28 H 1.48495 * 109.47232 * 0.02562 * 27 25 23
29 29 H 1.48502 * 109.46690 * 120.00445 * 27 25 23
30 30 H 1.48503 * 109.47016 * 239.99936 * 27 25 23
31 31 H 1.09007 * 109.46934 * 85.15939 * 1 2 3
32 32 H 1.08999 * 109.47561 * 205.15915 * 1 2 3
33 33 H 1.09001 * 109.47624 * 325.16423 * 1 2 3
34 34 H 1.09000 * 109.46861 * 359.97438 * 5 4 3
35 35 H 1.08994 * 109.47339 * 179.97438 * 6 5 4
36 36 H 1.09004 * 109.47131 * 59.99608 * 6 5 4
37 37 H 1.09002 * 109.47118 * 299.99792 * 6 5 4
38 38 H 1.09004 * 109.46563 * 179.97438 * 7 5 4
39 39 H 1.08996 * 109.47103 * 300.00304 * 7 5 4
40 40 H 1.09003 * 109.46693 * 60.00276 * 7 5 4
41 41 H 1.07999 * 120.53527 * 180.24967 * 9 8 4
42 42 H 1.09002 * 109.75236 * 252.38056 * 14 13 11
43 43 H 1.09000 * 109.75615 * 13.06899 * 14 13 11
44 44 H 1.08992 * 110.36521 * 207.92678 * 17 15 14
45 45 H 1.09003 * 110.36336 * 330.24272 * 17 15 14
46 46 H 1.08994 * 110.36622 * 241.15083 * 18 17 15
47 47 H 1.09002 * 110.36358 * 118.83421 * 18 17 15
48 48 H 1.09000 * 109.75030 * 346.87474 * 21 13 11
49 49 H 1.08995 * 109.74531 * 107.61140 * 21 13 11
50 50 H 0.96995 * 120.00192 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1784 1.1384 0.0000
4 6 3.4970 1.1483 -0.0005
5 6 4.2165 2.4724 0.0001
6 6 5.0942 2.5753 1.2491
7 6 5.0933 2.5769 -1.2494
8 7 4.2061 0.0363 -0.0064
9 6 3.6164 -1.1461 -0.0010
10 6 2.2179 -1.2052 -0.0005
11 6 1.5121 -2.5040 -0.0017
12 8 0.6863 -2.7477 0.8564
13 7 1.7841 -3.4181 -0.9541
14 6 1.0295 -4.6796 -1.0224
15 6 0.6035 -4.9010 -2.4845
16 1 0.0078 -5.8059 -2.6054
17 6 -0.1390 -3.6312 -2.9585
18 6 0.9662 -2.7144 -3.5228
19 6 2.2761 -3.5134 -3.3378
20 1 2.9910 -3.3226 -4.1383
21 6 2.8380 -3.1732 -1.9515
22 7 1.8403 -4.9308 -3.3022
23 6 2.4404 -6.0140 -3.8869
24 1 1.8578 -6.8927 -4.1215
25 6 3.7973 -5.9826 -4.1780
26 7 4.5280 -4.9555 -3.7993
27 14 4.5861 -7.3982 -5.1071
28 1 3.5561 -8.4220 -5.4169
29 1 5.1764 -6.8919 -6.3723
30 1 5.6529 -8.0055 -4.2714
31 1 -0.3633 0.0867 -1.0241
32 1 -0.3634 -0.9301 0.4369
33 1 -0.3634 0.8435 0.5870
34 1 3.4870 3.2823 0.0005
35 1 5.6150 3.5328 1.2493
36 1 5.8237 1.7654 1.2483
37 1 4.4696 2.5009 2.1392
38 1 5.6134 3.5348 -1.2492
39 1 5.8227 1.7669 -1.2502
40 1 4.4680 2.5036 -2.1392
41 1 4.2039 -2.0523 -0.0019
42 1 1.6612 -5.5050 -0.6939
43 1 0.1467 -4.6158 -0.3863
44 1 -0.8588 -3.8813 -3.7377
45 1 -0.6398 -3.1489 -2.1190
46 1 1.0087 -1.7815 -2.9609
47 1 0.7898 -2.5140 -4.5796
48 1 3.1358 -2.1250 -1.9230
49 1 3.6991 -3.8073 -1.7407
50 1 5.4762 -4.9338 -4.0024
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001029504723.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:19
Heat of formation + Delta-G solvation = 41.316954 kcal
Electronic energy + Delta-G solvation = -32083.072429 eV
Core-core repulsion = 28111.047427 eV
Total energy + Delta-G solvation = -3972.025002 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.42900 -39.90050 -37.92975 -35.79455 -34.44213 -33.68771 -32.60439 -31.86554
-30.61055 -29.35495 -28.66896 -27.29004 -26.48443 -25.01866 -24.01088 -23.63756
-23.20957 -20.91041 -20.03588 -19.74807 -18.77757 -18.00941 -17.48099 -16.24812
-16.00024 -15.74765 -15.48464 -15.01591 -14.67377 -14.42274 -14.18308 -13.87224
-13.68951 -13.41351 -13.29949 -13.10085 -13.05671 -12.88826 -12.71590 -12.31583
-12.23210 -12.07680 -11.86708 -11.76966 -11.71218 -11.34105 -11.19740 -11.15611
-11.06097 -10.98222 -10.85404 -10.50995 -10.44961 -10.08761 -9.98758 -9.83335
-9.66597 -9.55232 -9.26493 -9.21290 -8.79025 -8.21562 -6.85582 -5.97890
-3.36420 0.64429 1.05834 2.87197 3.28766 3.34917 3.37668 3.37945
3.69644 3.74300 4.04140 4.33485 4.41632 4.70269 4.85214 4.90415
4.98746 5.02498 5.09799 5.23157 5.41181 5.48126 5.51261 5.54840
5.57187 5.63918 5.64934 5.69863 5.72878 5.75458 5.83146 5.84804
5.89159 6.00601 6.01283 6.09877 6.19545 6.21687 6.32009 6.38272
6.44340 6.50548 6.53744 6.63384 6.78674 6.84035 6.94759 7.13354
7.32416 7.59168 7.88617 8.04646 8.06108 8.45288 8.94896 9.56384
10.36529 11.17031
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012821 B = 0.003798 C = 0.003232
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2183.402255 B = 7370.724734 C = 8661.742948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.221 3.779
3 N -0.522 5.522
4 C 0.334 3.666
5 C -0.026 4.026
6 C -0.141 4.141
7 C -0.141 4.141
8 N -0.516 5.516
9 C 0.190 3.810
10 C -0.229 4.229
11 C 0.562 3.438
12 O -0.552 6.552
13 N -0.577 5.577
14 C 0.103 3.897
15 C 0.133 3.867
16 H 0.081 0.919
17 C -0.123 4.123
18 C -0.136 4.136
19 C 0.173 3.827
20 H 0.107 0.893
21 C 0.099 3.901
22 N -0.582 5.582
23 C -0.230 4.230
24 H 0.075 0.925
25 C 0.005 3.995
26 N -0.911 5.911
27 Si 0.911 3.089
28 H -0.278 1.278
29 H -0.290 1.290
30 H -0.289 1.289
31 H 0.085 0.915
32 H 0.100 0.900
33 H 0.083 0.917
34 H 0.095 0.905
35 H 0.065 0.935
36 H 0.068 0.932
37 H 0.052 0.948
38 H 0.064 0.936
39 H 0.069 0.931
40 H 0.054 0.946
41 H 0.174 0.826
42 H 0.067 0.933
43 H 0.076 0.924
44 H 0.056 0.944
45 H 0.054 0.946
46 H 0.046 0.954
47 H 0.055 0.945
48 H 0.055 0.945
49 H 0.096 0.904
50 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.729 12.388 5.814 13.954
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.075 3.925
3 N -0.236 5.236
4 C 0.067 3.933
5 C -0.047 4.047
6 C -0.199 4.199
7 C -0.200 4.200
8 N -0.229 5.229
9 C 0.023 3.977
10 C -0.236 4.236
11 C 0.348 3.652
12 O -0.432 6.432
13 N -0.307 5.307
14 C -0.021 4.021
15 C 0.024 3.976
16 H 0.099 0.901
17 C -0.162 4.162
18 C -0.175 4.175
19 C 0.066 3.934
20 H 0.125 0.875
21 C -0.024 4.024
22 N -0.303 5.303
23 C -0.359 4.359
24 H 0.092 0.908
25 C -0.194 4.194
26 N -0.556 5.556
27 Si 0.741 3.259
28 H -0.204 1.204
29 H -0.216 1.216
30 H -0.216 1.216
31 H 0.104 0.896
32 H 0.118 0.882
33 H 0.102 0.898
34 H 0.113 0.887
35 H 0.084 0.916
36 H 0.087 0.913
37 H 0.071 0.929
38 H 0.083 0.917
39 H 0.088 0.912
40 H 0.073 0.927
41 H 0.191 0.809
42 H 0.085 0.915
43 H 0.095 0.905
44 H 0.074 0.926
45 H 0.073 0.927
46 H 0.065 0.935
47 H 0.073 0.927
48 H 0.073 0.927
49 H 0.114 0.886
50 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -2.444 12.975 6.116 14.550
hybrid contribution 0.231 -1.559 -0.497 1.653
sum -2.213 11.415 5.619 12.914
Atomic orbital electron populations
1.21008 0.87374 1.05480 1.03831 1.21730 0.97578 0.86467 0.86754
1.68153 1.09559 1.29677 1.16257 1.23292 0.86455 0.94715 0.88808
1.19982 0.96923 0.90327 0.97433 1.21793 0.99582 1.02674 0.95809
1.21802 0.99669 1.02672 0.95811 1.68196 1.41048 0.98263 1.15427
1.23520 0.90756 0.96430 0.86997 1.21593 0.96607 0.96400 1.09000
1.17788 0.82468 0.82961 0.81987 1.90710 1.35703 1.79115 1.37688
1.48187 1.36140 1.17703 1.28696 1.22445 0.95752 0.84472 0.99447
1.22022 0.90199 0.96228 0.89108 0.90107 1.22467 0.97441 0.96952
0.99375 1.22637 0.97907 0.97462 0.99525 1.21546 0.93155 0.84195
0.94554 0.87542 1.22716 0.90269 0.99404 0.90056 1.45101 1.25645
1.02696 1.56842 1.19006 0.90458 0.93700 1.32697 0.90771 1.24994
0.95760 0.97940 1.00658 1.69818 1.06275 1.30243 1.49302 0.86073
0.79186 0.81533 0.79075 1.20350 1.21635 1.21596 0.89642 0.88168
0.89819 0.88699 0.91632 0.91282 0.92860 0.91668 0.91160 0.92659
0.80864 0.91493 0.90550 0.92551 0.92695 0.93527 0.92653 0.92692
0.88627 0.93427
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.56 9.94 36.00 0.36 -1.20 16
2 C 0.22 3.38 6.86 -81.82 -0.56 2.82 16
3 N -0.52 -7.80 10.22 -6.67 -0.07 -7.87 16
4 C 0.33 4.74 6.34 -157.06 -1.00 3.74 16
5 C -0.03 -0.28 3.25 -91.77 -0.30 -0.58 16
6 C -0.14 -1.32 9.09 37.16 0.34 -0.98 16
7 C -0.14 -1.40 9.08 37.16 0.34 -1.06 16
8 N -0.52 -7.74 9.77 -10.39 -0.10 -7.84 16
9 C 0.19 2.94 8.88 -16.77 -0.15 2.79 16
10 C -0.23 -3.71 4.81 -104.70 -0.50 -4.22 16
11 C 0.56 10.02 6.64 -12.34 -0.08 9.94 16
12 O -0.55 -10.82 14.73 5.32 0.08 -10.74 16
13 N -0.58 -10.56 2.26 -172.95 -0.39 -10.95 16
14 C 0.10 1.90 5.88 -3.22 -0.02 1.88 16
15 C 0.13 2.52 4.32 -65.66 -0.28 2.24 16
16 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16
17 C -0.12 -2.11 6.18 -25.25 -0.16 -2.27 16
18 C -0.14 -2.46 6.18 -25.25 -0.16 -2.62 16
19 C 0.17 3.64 3.07 -65.90 -0.20 3.44 16
20 H 0.11 2.55 6.89 -51.93 -0.36 2.20 16
21 C 0.10 1.92 4.74 -3.47 -0.02 1.90 16
22 N -0.58 -13.15 2.78 -152.86 -0.43 -13.57 16
23 C -0.23 -5.79 10.34 -15.06 -0.16 -5.94 16
24 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16
25 C 0.00 0.12 5.43 -17.43 -0.09 0.02 16
26 N -0.91 -23.63 10.19 55.49 0.57 -23.06 16
27 Si 0.91 20.48 29.56 -169.99 -5.02 15.45 16
28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
30 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16
32 H 0.10 1.45 5.73 -51.93 -0.30 1.15 16
33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16
35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
36 H 0.07 0.71 8.01 -51.93 -0.42 0.29 16
37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16
40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.17 2.55 7.51 -52.49 -0.39 2.16 16
42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
43 H 0.08 1.34 7.14 -51.93 -0.37 0.97 16
44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
45 H 0.05 0.90 7.84 -51.93 -0.41 0.49 16
46 H 0.05 0.80 7.83 -51.93 -0.41 0.40 16
47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
48 H 0.05 1.00 5.18 -51.93 -0.27 0.73 16
49 H 0.10 2.13 7.24 -51.93 -0.38 1.75 16
50 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16
LS Contribution 388.91 15.07 5.86 5.86
Total: -1.00 -27.82 388.91 -10.05 -37.88
By element:
Atomic # 1 Polarization: 12.84 SS G_CDS: -7.90 Total: 4.94 kcal
Atomic # 6 Polarization: 12.55 SS G_CDS: -2.64 Total: 9.91 kcal
Atomic # 7 Polarization: -62.88 SS G_CDS: -0.42 Total: -63.30 kcal
Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -27.82 -10.05 -37.88 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001029504723.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.193 kcal
(2) G-P(sol) polarization free energy of solvation -27.824 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.369 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds