Wall clock time and date at job start Wed Apr 1 2020 03:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32163 * 120.53407 * 2 1 4 4 C 1.31863 * 120.96453 * 180.02562 * 3 2 1 5 5 C 1.50698 * 118.95021 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47306 * 119.99785 * 5 4 3 7 7 C 1.53005 * 109.46841 * 239.99756 * 5 4 3 8 8 N 1.31884 * 122.09556 * 0.27486 * 4 3 2 9 9 C 1.32136 * 120.96367 * 359.44162 * 8 4 3 10 10 C 1.39928 * 120.53695 * 180.02562 * 2 1 3 11 11 C 1.47823 * 120.94135 * 0.02562 * 10 2 1 12 12 O 1.21554 * 119.99813 * 305.35578 * 11 10 2 13 13 N 1.34776 * 120.00323 * 125.36017 * 11 10 2 14 14 C 1.47160 * 120.70938 * 184.00412 * 13 11 10 15 15 C 1.53892 * 108.02323 * 132.75687 * 14 13 11 16 16 H 1.09010 * 112.09301 * 181.91899 * 15 14 13 17 17 C 1.54547 * 107.83104 * 306.50371 * 15 14 13 18 18 C 1.54280 * 104.84839 * 89.07972 * 17 15 14 19 19 C 1.54546 * 104.84556 * 359.97438 * 18 17 15 20 20 H 1.09004 * 112.17795 * 146.41516 * 19 18 17 21 21 C 1.47164 * 120.70733 * 3.72526 * 13 11 10 22 22 N 1.48300 * 107.21160 * 58.36594 * 15 14 13 23 23 C 1.36943 * 128.07995 * 106.66409 * 22 15 14 24 24 H 1.08008 * 119.99110 * 24.15036 * 23 22 15 25 25 C 1.38807 * 120.00104 * 204.14958 * 23 22 15 26 26 N 1.31616 * 120.00295 * 5.26699 * 25 23 22 27 27 Si 1.86802 * 119.99668 * 185.26163 * 25 23 22 28 28 H 1.48495 * 109.47232 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46690 * 120.00445 * 27 25 23 30 30 H 1.48503 * 109.47016 * 239.99936 * 27 25 23 31 31 H 1.09007 * 109.46934 * 85.15939 * 1 2 3 32 32 H 1.08999 * 109.47561 * 205.15915 * 1 2 3 33 33 H 1.09001 * 109.47624 * 325.16423 * 1 2 3 34 34 H 1.09000 * 109.46861 * 359.97438 * 5 4 3 35 35 H 1.08994 * 109.47339 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47131 * 59.99608 * 6 5 4 37 37 H 1.09002 * 109.47118 * 299.99792 * 6 5 4 38 38 H 1.09004 * 109.46563 * 179.97438 * 7 5 4 39 39 H 1.08996 * 109.47103 * 300.00304 * 7 5 4 40 40 H 1.09003 * 109.46693 * 60.00276 * 7 5 4 41 41 H 1.07999 * 120.53527 * 180.24967 * 9 8 4 42 42 H 1.09002 * 109.75236 * 252.38056 * 14 13 11 43 43 H 1.09000 * 109.75615 * 13.06899 * 14 13 11 44 44 H 1.08992 * 110.36521 * 207.92678 * 17 15 14 45 45 H 1.09003 * 110.36336 * 330.24272 * 17 15 14 46 46 H 1.08994 * 110.36622 * 241.15083 * 18 17 15 47 47 H 1.09002 * 110.36358 * 118.83421 * 18 17 15 48 48 H 1.09000 * 109.75030 * 346.87474 * 21 13 11 49 49 H 1.08995 * 109.74531 * 107.61140 * 21 13 11 50 50 H 0.96995 * 120.00192 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1384 0.0000 4 6 3.4970 1.1483 -0.0005 5 6 4.2165 2.4724 0.0001 6 6 5.0942 2.5753 1.2491 7 6 5.0933 2.5769 -1.2494 8 7 4.2061 0.0363 -0.0064 9 6 3.6164 -1.1461 -0.0010 10 6 2.2179 -1.2052 -0.0005 11 6 1.5121 -2.5040 -0.0017 12 8 0.6863 -2.7477 0.8564 13 7 1.7841 -3.4181 -0.9541 14 6 1.0295 -4.6796 -1.0224 15 6 0.6035 -4.9010 -2.4845 16 1 0.0078 -5.8059 -2.6054 17 6 -0.1390 -3.6312 -2.9585 18 6 0.9662 -2.7144 -3.5228 19 6 2.2761 -3.5134 -3.3378 20 1 2.9910 -3.3226 -4.1383 21 6 2.8380 -3.1732 -1.9515 22 7 1.8403 -4.9308 -3.3022 23 6 2.4404 -6.0140 -3.8869 24 1 1.8578 -6.8927 -4.1215 25 6 3.7973 -5.9826 -4.1780 26 7 4.5280 -4.9555 -3.7993 27 14 4.5861 -7.3982 -5.1071 28 1 3.5561 -8.4220 -5.4169 29 1 5.1764 -6.8919 -6.3723 30 1 5.6529 -8.0055 -4.2714 31 1 -0.3633 0.0867 -1.0241 32 1 -0.3634 -0.9301 0.4369 33 1 -0.3634 0.8435 0.5870 34 1 3.4870 3.2823 0.0005 35 1 5.6150 3.5328 1.2493 36 1 5.8237 1.7654 1.2483 37 1 4.4696 2.5009 2.1392 38 1 5.6134 3.5348 -1.2492 39 1 5.8227 1.7669 -1.2502 40 1 4.4680 2.5036 -2.1392 41 1 4.2039 -2.0523 -0.0019 42 1 1.6612 -5.5050 -0.6939 43 1 0.1467 -4.6158 -0.3863 44 1 -0.8588 -3.8813 -3.7377 45 1 -0.6398 -3.1489 -2.1190 46 1 1.0087 -1.7815 -2.9609 47 1 0.7898 -2.5140 -4.5796 48 1 3.1358 -2.1250 -1.9230 49 1 3.6991 -3.8073 -1.7407 50 1 5.4762 -4.9338 -4.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029504723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:19 Heat of formation + Delta-G solvation = 41.316954 kcal Electronic energy + Delta-G solvation = -32083.072429 eV Core-core repulsion = 28111.047427 eV Total energy + Delta-G solvation = -3972.025002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42900 -39.90050 -37.92975 -35.79455 -34.44213 -33.68771 -32.60439 -31.86554 -30.61055 -29.35495 -28.66896 -27.29004 -26.48443 -25.01866 -24.01088 -23.63756 -23.20957 -20.91041 -20.03588 -19.74807 -18.77757 -18.00941 -17.48099 -16.24812 -16.00024 -15.74765 -15.48464 -15.01591 -14.67377 -14.42274 -14.18308 -13.87224 -13.68951 -13.41351 -13.29949 -13.10085 -13.05671 -12.88826 -12.71590 -12.31583 -12.23210 -12.07680 -11.86708 -11.76966 -11.71218 -11.34105 -11.19740 -11.15611 -11.06097 -10.98222 -10.85404 -10.50995 -10.44961 -10.08761 -9.98758 -9.83335 -9.66597 -9.55232 -9.26493 -9.21290 -8.79025 -8.21562 -6.85582 -5.97890 -3.36420 0.64429 1.05834 2.87197 3.28766 3.34917 3.37668 3.37945 3.69644 3.74300 4.04140 4.33485 4.41632 4.70269 4.85214 4.90415 4.98746 5.02498 5.09799 5.23157 5.41181 5.48126 5.51261 5.54840 5.57187 5.63918 5.64934 5.69863 5.72878 5.75458 5.83146 5.84804 5.89159 6.00601 6.01283 6.09877 6.19545 6.21687 6.32009 6.38272 6.44340 6.50548 6.53744 6.63384 6.78674 6.84035 6.94759 7.13354 7.32416 7.59168 7.88617 8.04646 8.06108 8.45288 8.94896 9.56384 10.36529 11.17031 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.003798 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.402255 B = 7370.724734 C = 8661.742948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.221 3.779 3 N -0.522 5.522 4 C 0.334 3.666 5 C -0.026 4.026 6 C -0.141 4.141 7 C -0.141 4.141 8 N -0.516 5.516 9 C 0.190 3.810 10 C -0.229 4.229 11 C 0.562 3.438 12 O -0.552 6.552 13 N -0.577 5.577 14 C 0.103 3.897 15 C 0.133 3.867 16 H 0.081 0.919 17 C -0.123 4.123 18 C -0.136 4.136 19 C 0.173 3.827 20 H 0.107 0.893 21 C 0.099 3.901 22 N -0.582 5.582 23 C -0.230 4.230 24 H 0.075 0.925 25 C 0.005 3.995 26 N -0.911 5.911 27 Si 0.911 3.089 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.289 1.289 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.174 0.826 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 12.388 5.814 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 N -0.236 5.236 4 C 0.067 3.933 5 C -0.047 4.047 6 C -0.199 4.199 7 C -0.200 4.200 8 N -0.229 5.229 9 C 0.023 3.977 10 C -0.236 4.236 11 C 0.348 3.652 12 O -0.432 6.432 13 N -0.307 5.307 14 C -0.021 4.021 15 C 0.024 3.976 16 H 0.099 0.901 17 C -0.162 4.162 18 C -0.175 4.175 19 C 0.066 3.934 20 H 0.125 0.875 21 C -0.024 4.024 22 N -0.303 5.303 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.194 4.194 26 N -0.556 5.556 27 Si 0.741 3.259 28 H -0.204 1.204 29 H -0.216 1.216 30 H -0.216 1.216 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.191 0.809 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.114 0.886 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.444 12.975 6.116 14.550 hybrid contribution 0.231 -1.559 -0.497 1.653 sum -2.213 11.415 5.619 12.914 Atomic orbital electron populations 1.21008 0.87374 1.05480 1.03831 1.21730 0.97578 0.86467 0.86754 1.68153 1.09559 1.29677 1.16257 1.23292 0.86455 0.94715 0.88808 1.19982 0.96923 0.90327 0.97433 1.21793 0.99582 1.02674 0.95809 1.21802 0.99669 1.02672 0.95811 1.68196 1.41048 0.98263 1.15427 1.23520 0.90756 0.96430 0.86997 1.21593 0.96607 0.96400 1.09000 1.17788 0.82468 0.82961 0.81987 1.90710 1.35703 1.79115 1.37688 1.48187 1.36140 1.17703 1.28696 1.22445 0.95752 0.84472 0.99447 1.22022 0.90199 0.96228 0.89108 0.90107 1.22467 0.97441 0.96952 0.99375 1.22637 0.97907 0.97462 0.99525 1.21546 0.93155 0.84195 0.94554 0.87542 1.22716 0.90269 0.99404 0.90056 1.45101 1.25645 1.02696 1.56842 1.19006 0.90458 0.93700 1.32697 0.90771 1.24994 0.95760 0.97940 1.00658 1.69818 1.06275 1.30243 1.49302 0.86073 0.79186 0.81533 0.79075 1.20350 1.21635 1.21596 0.89642 0.88168 0.89819 0.88699 0.91632 0.91282 0.92860 0.91668 0.91160 0.92659 0.80864 0.91493 0.90550 0.92551 0.92695 0.93527 0.92653 0.92692 0.88627 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.94 36.00 0.36 -1.20 16 2 C 0.22 3.38 6.86 -81.82 -0.56 2.82 16 3 N -0.52 -7.80 10.22 -6.67 -0.07 -7.87 16 4 C 0.33 4.74 6.34 -157.06 -1.00 3.74 16 5 C -0.03 -0.28 3.25 -91.77 -0.30 -0.58 16 6 C -0.14 -1.32 9.09 37.16 0.34 -0.98 16 7 C -0.14 -1.40 9.08 37.16 0.34 -1.06 16 8 N -0.52 -7.74 9.77 -10.39 -0.10 -7.84 16 9 C 0.19 2.94 8.88 -16.77 -0.15 2.79 16 10 C -0.23 -3.71 4.81 -104.70 -0.50 -4.22 16 11 C 0.56 10.02 6.64 -12.34 -0.08 9.94 16 12 O -0.55 -10.82 14.73 5.32 0.08 -10.74 16 13 N -0.58 -10.56 2.26 -172.95 -0.39 -10.95 16 14 C 0.10 1.90 5.88 -3.22 -0.02 1.88 16 15 C 0.13 2.52 4.32 -65.66 -0.28 2.24 16 16 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 17 C -0.12 -2.11 6.18 -25.25 -0.16 -2.27 16 18 C -0.14 -2.46 6.18 -25.25 -0.16 -2.62 16 19 C 0.17 3.64 3.07 -65.90 -0.20 3.44 16 20 H 0.11 2.55 6.89 -51.93 -0.36 2.20 16 21 C 0.10 1.92 4.74 -3.47 -0.02 1.90 16 22 N -0.58 -13.15 2.78 -152.86 -0.43 -13.57 16 23 C -0.23 -5.79 10.34 -15.06 -0.16 -5.94 16 24 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 25 C 0.00 0.12 5.43 -17.43 -0.09 0.02 16 26 N -0.91 -23.63 10.19 55.49 0.57 -23.06 16 27 Si 0.91 20.48 29.56 -169.99 -5.02 15.45 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.45 5.73 -51.93 -0.30 1.15 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.71 8.01 -51.93 -0.42 0.29 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.17 2.55 7.51 -52.49 -0.39 2.16 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.34 7.14 -51.93 -0.37 0.97 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.90 7.84 -51.93 -0.41 0.49 16 46 H 0.05 0.80 7.83 -51.93 -0.41 0.40 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 1.00 5.18 -51.93 -0.27 0.73 16 49 H 0.10 2.13 7.24 -51.93 -0.38 1.75 16 50 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -27.82 388.91 -10.05 -37.88 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.90 Total: 4.94 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.64 Total: 9.91 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.42 Total: -63.30 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.82 -10.05 -37.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029504723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.193 kcal (2) G-P(sol) polarization free energy of solvation -27.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds