Wall clock time and date at job start Wed Apr 1 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32163 * 120.53407 * 2 1 4 4 C 1.31863 * 120.96453 * 180.02562 * 3 2 1 5 5 C 1.50698 * 118.95021 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47306 * 119.99785 * 5 4 3 7 7 C 1.53005 * 109.46841 * 239.99756 * 5 4 3 8 8 N 1.31884 * 122.09556 * 0.27486 * 4 3 2 9 9 C 1.32136 * 120.96367 * 359.44162 * 8 4 3 10 10 C 1.39928 * 120.53695 * 180.02562 * 2 1 3 11 11 C 1.47823 * 120.94135 * 0.02562 * 10 2 1 12 12 O 1.21554 * 119.99813 * 305.35578 * 11 10 2 13 13 N 1.34776 * 120.00323 * 125.36017 * 11 10 2 14 14 C 1.47160 * 120.70938 * 184.00412 * 13 11 10 15 15 C 1.53892 * 108.02323 * 132.75687 * 14 13 11 16 16 H 1.09010 * 112.09301 * 181.91899 * 15 14 13 17 17 C 1.54547 * 107.83104 * 306.50371 * 15 14 13 18 18 C 1.54280 * 104.84839 * 89.07972 * 17 15 14 19 19 C 1.54546 * 104.84556 * 359.97438 * 18 17 15 20 20 H 1.09004 * 112.17795 * 146.41516 * 19 18 17 21 21 C 1.47164 * 120.70733 * 3.72526 * 13 11 10 22 22 N 1.48300 * 107.21160 * 58.36594 * 15 14 13 23 23 C 1.36943 * 128.07995 * 106.66409 * 22 15 14 24 24 H 1.08008 * 119.99110 * 24.15036 * 23 22 15 25 25 C 1.38807 * 120.00104 * 204.14958 * 23 22 15 26 26 N 1.31616 * 120.00295 * 5.26699 * 25 23 22 27 27 Si 1.86802 * 119.99668 * 185.26163 * 25 23 22 28 28 H 1.48495 * 109.47232 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46690 * 120.00445 * 27 25 23 30 30 H 1.48503 * 109.47016 * 239.99936 * 27 25 23 31 31 H 1.09007 * 109.46934 * 85.15939 * 1 2 3 32 32 H 1.08999 * 109.47561 * 205.15915 * 1 2 3 33 33 H 1.09001 * 109.47624 * 325.16423 * 1 2 3 34 34 H 1.09000 * 109.46861 * 359.97438 * 5 4 3 35 35 H 1.08994 * 109.47339 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47131 * 59.99608 * 6 5 4 37 37 H 1.09002 * 109.47118 * 299.99792 * 6 5 4 38 38 H 1.09004 * 109.46563 * 179.97438 * 7 5 4 39 39 H 1.08996 * 109.47103 * 300.00304 * 7 5 4 40 40 H 1.09003 * 109.46693 * 60.00276 * 7 5 4 41 41 H 1.07999 * 120.53527 * 180.24967 * 9 8 4 42 42 H 1.09002 * 109.75236 * 252.38056 * 14 13 11 43 43 H 1.09000 * 109.75615 * 13.06899 * 14 13 11 44 44 H 1.08992 * 110.36521 * 207.92678 * 17 15 14 45 45 H 1.09003 * 110.36336 * 330.24272 * 17 15 14 46 46 H 1.08994 * 110.36622 * 241.15083 * 18 17 15 47 47 H 1.09002 * 110.36358 * 118.83421 * 18 17 15 48 48 H 1.09000 * 109.75030 * 346.87474 * 21 13 11 49 49 H 1.08995 * 109.74531 * 107.61140 * 21 13 11 50 50 H 0.96995 * 120.00192 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1384 0.0000 4 6 3.4970 1.1483 -0.0005 5 6 4.2165 2.4724 0.0001 6 6 5.0942 2.5753 1.2491 7 6 5.0933 2.5769 -1.2494 8 7 4.2061 0.0363 -0.0064 9 6 3.6164 -1.1461 -0.0010 10 6 2.2179 -1.2052 -0.0005 11 6 1.5121 -2.5040 -0.0017 12 8 0.6863 -2.7477 0.8564 13 7 1.7841 -3.4181 -0.9541 14 6 1.0295 -4.6796 -1.0224 15 6 0.6035 -4.9010 -2.4845 16 1 0.0078 -5.8059 -2.6054 17 6 -0.1390 -3.6312 -2.9585 18 6 0.9662 -2.7144 -3.5228 19 6 2.2761 -3.5134 -3.3378 20 1 2.9910 -3.3226 -4.1383 21 6 2.8380 -3.1732 -1.9515 22 7 1.8403 -4.9308 -3.3022 23 6 2.4404 -6.0140 -3.8869 24 1 1.8578 -6.8927 -4.1215 25 6 3.7973 -5.9826 -4.1780 26 7 4.5280 -4.9555 -3.7993 27 14 4.5861 -7.3982 -5.1071 28 1 3.5561 -8.4220 -5.4169 29 1 5.1764 -6.8919 -6.3723 30 1 5.6529 -8.0055 -4.2714 31 1 -0.3633 0.0867 -1.0241 32 1 -0.3634 -0.9301 0.4369 33 1 -0.3634 0.8435 0.5870 34 1 3.4870 3.2823 0.0005 35 1 5.6150 3.5328 1.2493 36 1 5.8237 1.7654 1.2483 37 1 4.4696 2.5009 2.1392 38 1 5.6134 3.5348 -1.2492 39 1 5.8227 1.7669 -1.2502 40 1 4.4680 2.5036 -2.1392 41 1 4.2039 -2.0523 -0.0019 42 1 1.6612 -5.5050 -0.6939 43 1 0.1467 -4.6158 -0.3863 44 1 -0.8588 -3.8813 -3.7377 45 1 -0.6398 -3.1489 -2.1190 46 1 1.0087 -1.7815 -2.9609 47 1 0.7898 -2.5140 -4.5796 48 1 3.1358 -2.1250 -1.9230 49 1 3.6991 -3.8073 -1.7407 50 1 5.4762 -4.9338 -4.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029504723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:18 Heat of formation + Delta-G solvation = 27.710999 kcal Electronic energy + Delta-G solvation = -32083.662427 eV Core-core repulsion = 28111.047427 eV Total energy + Delta-G solvation = -3972.615000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.65646 -41.35206 -39.42824 -36.76243 -35.74651 -35.16215 -34.29965 -33.09595 -32.09877 -31.07989 -29.82267 -28.04910 -27.99498 -26.35485 -25.51720 -25.24238 -24.37821 -22.15436 -21.38084 -21.14994 -20.39779 -19.24386 -18.97228 -17.65307 -17.30943 -17.20972 -16.96246 -16.53524 -16.14876 -15.59335 -15.33729 -15.26327 -14.96181 -14.81403 -14.62248 -14.51461 -14.30642 -14.25587 -13.69419 -13.59352 -13.46355 -13.35428 -13.13605 -13.09739 -12.96839 -12.88495 -12.77336 -12.56895 -12.23262 -12.14394 -12.00208 -11.87851 -11.84375 -11.65893 -11.58318 -11.51594 -11.16994 -10.98820 -10.66591 -10.44807 -10.39819 -9.81835 -8.64077 -7.90144 -5.28686 -0.55321 -0.13228 1.45780 1.48781 1.51261 1.58847 1.93029 2.49064 2.52343 2.69131 2.91021 3.24005 3.32436 3.33030 3.47482 3.82440 3.88461 4.04287 4.06952 4.09325 4.17456 4.20099 4.28454 4.32229 4.39703 4.47659 4.53460 4.57996 4.69064 4.71621 4.81472 4.82497 4.86121 4.92490 4.94888 4.97170 5.01064 5.05240 5.08462 5.09414 5.24227 5.25780 5.33453 5.33987 5.43179 5.51343 5.60234 5.74359 5.76949 6.22181 6.40222 6.90112 6.99488 7.05667 7.69111 8.51949 9.23240 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.003798 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.402255 B = 7370.724734 C = 8661.742948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.220 3.780 3 N -0.526 5.526 4 C 0.331 3.669 5 C -0.028 4.028 6 C -0.135 4.135 7 C -0.137 4.137 8 N -0.524 5.524 9 C 0.187 3.813 10 C -0.247 4.247 11 C 0.572 3.428 12 O -0.567 6.567 13 N -0.578 5.578 14 C 0.109 3.891 15 C 0.129 3.871 16 H 0.090 0.910 17 C -0.112 4.112 18 C -0.126 4.126 19 C 0.169 3.831 20 H 0.072 0.928 21 C 0.120 3.880 22 N -0.601 5.601 23 C -0.238 4.238 24 H 0.073 0.927 25 C -0.041 4.041 26 N -0.929 5.929 27 Si 0.967 3.033 28 H -0.271 1.271 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.174 0.826 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 14.096 6.051 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.074 3.926 3 N -0.241 5.241 4 C 0.065 3.935 5 C -0.048 4.048 6 C -0.193 4.193 7 C -0.195 4.195 8 N -0.238 5.238 9 C 0.020 3.980 10 C -0.254 4.254 11 C 0.359 3.641 12 O -0.448 6.448 13 N -0.308 5.308 14 C -0.016 4.016 15 C 0.022 3.978 16 H 0.108 0.892 17 C -0.151 4.151 18 C -0.165 4.165 19 C 0.062 3.938 20 H 0.090 0.910 21 C -0.004 4.004 22 N -0.323 5.323 23 C -0.367 4.367 24 H 0.091 0.909 25 C -0.237 4.237 26 N -0.576 5.576 27 Si 0.796 3.204 28 H -0.195 1.195 29 H -0.222 1.222 30 H -0.223 1.223 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.191 0.809 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.521 14.690 6.364 16.392 hybrid contribution 0.560 -2.037 -0.528 2.178 sum -2.961 12.653 5.836 14.245 Atomic orbital electron populations 1.21033 0.85741 1.05520 1.04937 1.22124 0.98714 0.86145 0.85664 1.68282 1.09828 1.29251 1.16728 1.24070 0.86591 0.95725 0.87122 1.20198 0.97344 0.88765 0.98468 1.21771 0.99061 1.03723 0.94780 1.21782 0.99137 1.03676 0.94903 1.68276 1.41161 0.98348 1.15983 1.23574 0.90739 0.96882 0.86802 1.21481 0.96769 0.95976 1.11223 1.17896 0.81954 0.83151 0.81139 1.90699 1.36511 1.79555 1.38067 1.48118 1.35969 1.17912 1.28758 1.22334 0.95793 0.84067 0.99370 1.22201 0.89097 0.97745 0.88759 0.89243 1.22382 0.96998 0.95516 1.00154 1.22526 0.96380 0.97554 1.00084 1.21474 0.93959 0.84235 0.94177 0.90987 1.22288 0.89334 0.99187 0.89589 1.45264 1.26660 1.02752 1.57585 1.19230 0.90733 0.94365 1.32407 0.90911 1.25596 0.96337 0.99826 1.01936 1.69965 1.05892 1.31386 1.50316 0.85206 0.78153 0.79481 0.77545 1.19520 1.22178 1.22278 0.88156 0.89479 0.88010 0.87379 0.88921 0.92485 0.93317 0.88901 0.92550 0.93525 0.80934 0.93387 0.89148 0.91152 0.91309 0.92450 0.92315 0.91576 0.91902 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.94 71.23 0.71 -2.03 16 2 C 0.22 6.39 6.86 42.92 0.29 6.68 16 3 N -0.53 -14.82 10.22 -175.03 -1.79 -16.61 16 4 C 0.33 8.95 6.34 138.70 0.88 9.83 16 5 C -0.03 -0.54 3.25 -11.54 -0.04 -0.58 16 6 C -0.14 -2.26 9.09 71.98 0.65 -1.61 16 7 C -0.14 -2.45 9.08 71.98 0.65 -1.80 16 8 N -0.52 -15.49 9.77 -186.79 -1.82 -17.32 16 9 C 0.19 5.80 8.88 85.07 0.76 6.55 16 10 C -0.25 -7.85 4.81 -19.91 -0.10 -7.94 16 11 C 0.57 19.96 6.64 86.78 0.58 20.54 16 12 O -0.57 -21.65 14.73 -3.89 -0.06 -21.70 16 13 N -0.58 -20.98 2.26 -819.36 -1.85 -22.84 16 14 C 0.11 3.96 5.88 86.55 0.51 4.47 16 15 C 0.13 4.79 4.32 45.47 0.20 4.99 16 16 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 17 C -0.11 -3.58 6.18 31.55 0.20 -3.38 16 18 C -0.13 -4.40 6.18 31.55 0.20 -4.20 16 19 C 0.17 7.19 3.07 45.30 0.14 7.32 16 20 H 0.07 3.57 6.89 -2.39 -0.02 3.55 16 21 C 0.12 4.74 4.74 86.39 0.41 5.15 16 22 N -0.60 -27.31 2.78 -637.52 -1.77 -29.09 16 23 C -0.24 -12.10 10.34 84.03 0.87 -11.23 16 24 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 25 C -0.04 -2.13 5.43 84.86 0.46 -1.67 16 26 N -0.93 -49.69 10.19 21.65 0.22 -49.47 16 27 Si 0.97 42.78 29.56 68.60 2.03 44.80 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 30 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 31 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.09 2.35 5.73 -2.39 -0.01 2.33 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.10 8.01 -2.38 -0.02 1.08 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.17 8.00 -2.39 -0.02 1.15 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.17 5.24 7.51 -2.91 -0.02 5.22 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 3.06 7.14 -2.39 -0.02 3.04 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.07 2.04 7.84 -2.39 -0.02 2.02 16 46 H 0.06 1.87 7.83 -2.39 -0.02 1.85 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.07 2.44 5.18 -2.39 -0.01 2.42 16 49 H 0.06 2.91 7.24 -2.39 -0.02 2.90 16 50 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 Total: -1.00 -59.78 388.91 3.25 -56.53 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.94 Total: 24.60 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 7.36 Total: 31.08 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -7.02 Total: -135.32 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -59.78 3.25 -56.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029504723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.243 kcal (2) G-P(sol) polarization free energy of solvation -59.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds