Wall clock time and date at job start Wed Apr 1 2020 03:01:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.32163 * 120.53407 * 2 1
4 4 C 1.31863 * 120.96453 * 180.02562 * 3 2 1
5 5 C 1.50698 * 118.95021 * 180.02562 * 4 3 2
6 6 C 1.52997 * 109.47306 * 119.99785 * 5 4 3
7 7 C 1.53005 * 109.46841 * 239.99756 * 5 4 3
8 8 N 1.31884 * 122.09556 * 0.27486 * 4 3 2
9 9 C 1.32136 * 120.96367 * 359.44162 * 8 4 3
10 10 C 1.39928 * 120.53695 * 180.02562 * 2 1 3
11 11 C 1.47823 * 120.94135 * 0.02562 * 10 2 1
12 12 O 1.21554 * 119.99813 * 305.35578 * 11 10 2
13 13 N 1.34776 * 120.00323 * 125.36017 * 11 10 2
14 14 C 1.47160 * 120.70938 * 184.00412 * 13 11 10
15 15 C 1.53892 * 108.02323 * 132.75687 * 14 13 11
16 16 H 1.09010 * 112.09301 * 181.91899 * 15 14 13
17 17 C 1.54547 * 107.83104 * 306.50371 * 15 14 13
18 18 C 1.54280 * 104.84839 * 89.07972 * 17 15 14
19 19 C 1.54546 * 104.84556 * 359.97438 * 18 17 15
20 20 H 1.09004 * 112.17795 * 146.41516 * 19 18 17
21 21 C 1.47164 * 120.70733 * 3.72526 * 13 11 10
22 22 N 1.48300 * 107.21160 * 58.36594 * 15 14 13
23 23 C 1.36943 * 128.07995 * 106.66409 * 22 15 14
24 24 H 1.08008 * 119.99110 * 24.15036 * 23 22 15
25 25 C 1.38807 * 120.00104 * 204.14958 * 23 22 15
26 26 N 1.31616 * 120.00295 * 5.26699 * 25 23 22
27 27 Si 1.86802 * 119.99668 * 185.26163 * 25 23 22
28 28 H 1.48495 * 109.47232 * 0.02562 * 27 25 23
29 29 H 1.48502 * 109.46690 * 120.00445 * 27 25 23
30 30 H 1.48503 * 109.47016 * 239.99936 * 27 25 23
31 31 H 1.09007 * 109.46934 * 85.15939 * 1 2 3
32 32 H 1.08999 * 109.47561 * 205.15915 * 1 2 3
33 33 H 1.09001 * 109.47624 * 325.16423 * 1 2 3
34 34 H 1.09000 * 109.46861 * 359.97438 * 5 4 3
35 35 H 1.08994 * 109.47339 * 179.97438 * 6 5 4
36 36 H 1.09004 * 109.47131 * 59.99608 * 6 5 4
37 37 H 1.09002 * 109.47118 * 299.99792 * 6 5 4
38 38 H 1.09004 * 109.46563 * 179.97438 * 7 5 4
39 39 H 1.08996 * 109.47103 * 300.00304 * 7 5 4
40 40 H 1.09003 * 109.46693 * 60.00276 * 7 5 4
41 41 H 1.07999 * 120.53527 * 180.24967 * 9 8 4
42 42 H 1.09002 * 109.75236 * 252.38056 * 14 13 11
43 43 H 1.09000 * 109.75615 * 13.06899 * 14 13 11
44 44 H 1.08992 * 110.36521 * 207.92678 * 17 15 14
45 45 H 1.09003 * 110.36336 * 330.24272 * 17 15 14
46 46 H 1.08994 * 110.36622 * 241.15083 * 18 17 15
47 47 H 1.09002 * 110.36358 * 118.83421 * 18 17 15
48 48 H 1.09000 * 109.75030 * 346.87474 * 21 13 11
49 49 H 1.08995 * 109.74531 * 107.61140 * 21 13 11
50 50 H 0.96995 * 120.00192 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1784 1.1384 0.0000
4 6 3.4970 1.1483 -0.0005
5 6 4.2165 2.4724 0.0001
6 6 5.0942 2.5753 1.2491
7 6 5.0933 2.5769 -1.2494
8 7 4.2061 0.0363 -0.0064
9 6 3.6164 -1.1461 -0.0010
10 6 2.2179 -1.2052 -0.0005
11 6 1.5121 -2.5040 -0.0017
12 8 0.6863 -2.7477 0.8564
13 7 1.7841 -3.4181 -0.9541
14 6 1.0295 -4.6796 -1.0224
15 6 0.6035 -4.9010 -2.4845
16 1 0.0078 -5.8059 -2.6054
17 6 -0.1390 -3.6312 -2.9585
18 6 0.9662 -2.7144 -3.5228
19 6 2.2761 -3.5134 -3.3378
20 1 2.9910 -3.3226 -4.1383
21 6 2.8380 -3.1732 -1.9515
22 7 1.8403 -4.9308 -3.3022
23 6 2.4404 -6.0140 -3.8869
24 1 1.8578 -6.8927 -4.1215
25 6 3.7973 -5.9826 -4.1780
26 7 4.5280 -4.9555 -3.7993
27 14 4.5861 -7.3982 -5.1071
28 1 3.5561 -8.4220 -5.4169
29 1 5.1764 -6.8919 -6.3723
30 1 5.6529 -8.0055 -4.2714
31 1 -0.3633 0.0867 -1.0241
32 1 -0.3634 -0.9301 0.4369
33 1 -0.3634 0.8435 0.5870
34 1 3.4870 3.2823 0.0005
35 1 5.6150 3.5328 1.2493
36 1 5.8237 1.7654 1.2483
37 1 4.4696 2.5009 2.1392
38 1 5.6134 3.5348 -1.2492
39 1 5.8227 1.7669 -1.2502
40 1 4.4680 2.5036 -2.1392
41 1 4.2039 -2.0523 -0.0019
42 1 1.6612 -5.5050 -0.6939
43 1 0.1467 -4.6158 -0.3863
44 1 -0.8588 -3.8813 -3.7377
45 1 -0.6398 -3.1489 -2.1190
46 1 1.0087 -1.7815 -2.9609
47 1 0.7898 -2.5140 -4.5796
48 1 3.1358 -2.1250 -1.9230
49 1 3.6991 -3.8073 -1.7407
50 1 5.4762 -4.9338 -4.0024
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001029504723.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:18
Heat of formation + Delta-G solvation = 27.710999 kcal
Electronic energy + Delta-G solvation = -32083.662427 eV
Core-core repulsion = 28111.047427 eV
Total energy + Delta-G solvation = -3972.615000 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-42.65646 -41.35206 -39.42824 -36.76243 -35.74651 -35.16215 -34.29965 -33.09595
-32.09877 -31.07989 -29.82267 -28.04910 -27.99498 -26.35485 -25.51720 -25.24238
-24.37821 -22.15436 -21.38084 -21.14994 -20.39779 -19.24386 -18.97228 -17.65307
-17.30943 -17.20972 -16.96246 -16.53524 -16.14876 -15.59335 -15.33729 -15.26327
-14.96181 -14.81403 -14.62248 -14.51461 -14.30642 -14.25587 -13.69419 -13.59352
-13.46355 -13.35428 -13.13605 -13.09739 -12.96839 -12.88495 -12.77336 -12.56895
-12.23262 -12.14394 -12.00208 -11.87851 -11.84375 -11.65893 -11.58318 -11.51594
-11.16994 -10.98820 -10.66591 -10.44807 -10.39819 -9.81835 -8.64077 -7.90144
-5.28686 -0.55321 -0.13228 1.45780 1.48781 1.51261 1.58847 1.93029
2.49064 2.52343 2.69131 2.91021 3.24005 3.32436 3.33030 3.47482
3.82440 3.88461 4.04287 4.06952 4.09325 4.17456 4.20099 4.28454
4.32229 4.39703 4.47659 4.53460 4.57996 4.69064 4.71621 4.81472
4.82497 4.86121 4.92490 4.94888 4.97170 5.01064 5.05240 5.08462
5.09414 5.24227 5.25780 5.33453 5.33987 5.43179 5.51343 5.60234
5.74359 5.76949 6.22181 6.40222 6.90112 6.99488 7.05667 7.69111
8.51949 9.23240
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012821 B = 0.003798 C = 0.003232
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2183.402255 B = 7370.724734 C = 8661.742948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C 0.220 3.780
3 N -0.526 5.526
4 C 0.331 3.669
5 C -0.028 4.028
6 C -0.135 4.135
7 C -0.137 4.137
8 N -0.524 5.524
9 C 0.187 3.813
10 C -0.247 4.247
11 C 0.572 3.428
12 O -0.567 6.567
13 N -0.578 5.578
14 C 0.109 3.891
15 C 0.129 3.871
16 H 0.090 0.910
17 C -0.112 4.112
18 C -0.126 4.126
19 C 0.169 3.831
20 H 0.072 0.928
21 C 0.120 3.880
22 N -0.601 5.601
23 C -0.238 4.238
24 H 0.073 0.927
25 C -0.041 4.041
26 N -0.929 5.929
27 Si 0.967 3.033
28 H -0.271 1.271
29 H -0.295 1.295
30 H -0.296 1.296
31 H 0.100 0.900
32 H 0.087 0.913
33 H 0.101 0.899
34 H 0.108 0.892
35 H 0.092 0.908
36 H 0.056 0.944
37 H 0.048 0.952
38 H 0.092 0.908
39 H 0.055 0.945
40 H 0.046 0.954
41 H 0.174 0.826
42 H 0.048 0.952
43 H 0.090 0.910
44 H 0.070 0.930
45 H 0.068 0.932
46 H 0.057 0.943
47 H 0.058 0.942
48 H 0.066 0.934
49 H 0.063 0.937
50 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.781 14.096 6.051 15.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.074 3.926
3 N -0.241 5.241
4 C 0.065 3.935
5 C -0.048 4.048
6 C -0.193 4.193
7 C -0.195 4.195
8 N -0.238 5.238
9 C 0.020 3.980
10 C -0.254 4.254
11 C 0.359 3.641
12 O -0.448 6.448
13 N -0.308 5.308
14 C -0.016 4.016
15 C 0.022 3.978
16 H 0.108 0.892
17 C -0.151 4.151
18 C -0.165 4.165
19 C 0.062 3.938
20 H 0.090 0.910
21 C -0.004 4.004
22 N -0.323 5.323
23 C -0.367 4.367
24 H 0.091 0.909
25 C -0.237 4.237
26 N -0.576 5.576
27 Si 0.796 3.204
28 H -0.195 1.195
29 H -0.222 1.222
30 H -0.223 1.223
31 H 0.118 0.882
32 H 0.105 0.895
33 H 0.120 0.880
34 H 0.126 0.874
35 H 0.111 0.889
36 H 0.075 0.925
37 H 0.067 0.933
38 H 0.111 0.889
39 H 0.075 0.925
40 H 0.065 0.935
41 H 0.191 0.809
42 H 0.066 0.934
43 H 0.109 0.891
44 H 0.088 0.912
45 H 0.087 0.913
46 H 0.076 0.924
47 H 0.077 0.923
48 H 0.084 0.916
49 H 0.081 0.919
50 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -3.521 14.690 6.364 16.392
hybrid contribution 0.560 -2.037 -0.528 2.178
sum -2.961 12.653 5.836 14.245
Atomic orbital electron populations
1.21033 0.85741 1.05520 1.04937 1.22124 0.98714 0.86145 0.85664
1.68282 1.09828 1.29251 1.16728 1.24070 0.86591 0.95725 0.87122
1.20198 0.97344 0.88765 0.98468 1.21771 0.99061 1.03723 0.94780
1.21782 0.99137 1.03676 0.94903 1.68276 1.41161 0.98348 1.15983
1.23574 0.90739 0.96882 0.86802 1.21481 0.96769 0.95976 1.11223
1.17896 0.81954 0.83151 0.81139 1.90699 1.36511 1.79555 1.38067
1.48118 1.35969 1.17912 1.28758 1.22334 0.95793 0.84067 0.99370
1.22201 0.89097 0.97745 0.88759 0.89243 1.22382 0.96998 0.95516
1.00154 1.22526 0.96380 0.97554 1.00084 1.21474 0.93959 0.84235
0.94177 0.90987 1.22288 0.89334 0.99187 0.89589 1.45264 1.26660
1.02752 1.57585 1.19230 0.90733 0.94365 1.32407 0.90911 1.25596
0.96337 0.99826 1.01936 1.69965 1.05892 1.31386 1.50316 0.85206
0.78153 0.79481 0.77545 1.19520 1.22178 1.22278 0.88156 0.89479
0.88010 0.87379 0.88921 0.92485 0.93317 0.88901 0.92550 0.93525
0.80934 0.93387 0.89148 0.91152 0.91309 0.92450 0.92315 0.91576
0.91902 0.94121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.74 9.94 71.23 0.71 -2.03 16
2 C 0.22 6.39 6.86 42.92 0.29 6.68 16
3 N -0.53 -14.82 10.22 -175.03 -1.79 -16.61 16
4 C 0.33 8.95 6.34 138.70 0.88 9.83 16
5 C -0.03 -0.54 3.25 -11.54 -0.04 -0.58 16
6 C -0.14 -2.26 9.09 71.98 0.65 -1.61 16
7 C -0.14 -2.45 9.08 71.98 0.65 -1.80 16
8 N -0.52 -15.49 9.77 -186.79 -1.82 -17.32 16
9 C 0.19 5.80 8.88 85.07 0.76 6.55 16
10 C -0.25 -7.85 4.81 -19.91 -0.10 -7.94 16
11 C 0.57 19.96 6.64 86.78 0.58 20.54 16
12 O -0.57 -21.65 14.73 -3.89 -0.06 -21.70 16
13 N -0.58 -20.98 2.26 -819.36 -1.85 -22.84 16
14 C 0.11 3.96 5.88 86.55 0.51 4.47 16
15 C 0.13 4.79 4.32 45.47 0.20 4.99 16
16 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16
17 C -0.11 -3.58 6.18 31.55 0.20 -3.38 16
18 C -0.13 -4.40 6.18 31.55 0.20 -4.20 16
19 C 0.17 7.19 3.07 45.30 0.14 7.32 16
20 H 0.07 3.57 6.89 -2.39 -0.02 3.55 16
21 C 0.12 4.74 4.74 86.39 0.41 5.15 16
22 N -0.60 -27.31 2.78 -637.52 -1.77 -29.09 16
23 C -0.24 -12.10 10.34 84.03 0.87 -11.23 16
24 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16
25 C -0.04 -2.13 5.43 84.86 0.46 -1.67 16
26 N -0.93 -49.69 10.19 21.65 0.22 -49.47 16
27 Si 0.97 42.78 29.56 68.60 2.03 44.80 16
28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
29 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16
30 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16
31 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16
32 H 0.09 2.35 5.73 -2.39 -0.01 2.33 16
33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16
34 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16
35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
36 H 0.06 1.10 8.01 -2.38 -0.02 1.08 16
37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
39 H 0.06 1.17 8.00 -2.39 -0.02 1.15 16
40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
41 H 0.17 5.24 7.51 -2.91 -0.02 5.22 16
42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
43 H 0.09 3.06 7.14 -2.39 -0.02 3.04 16
44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
45 H 0.07 2.04 7.84 -2.39 -0.02 2.02 16
46 H 0.06 1.87 7.83 -2.39 -0.02 1.85 16
47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
48 H 0.07 2.44 5.18 -2.39 -0.01 2.42 16
49 H 0.06 2.91 7.24 -2.39 -0.02 2.90 16
50 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16
Total: -1.00 -59.78 388.91 3.25 -56.53
By element:
Atomic # 1 Polarization: 23.66 SS G_CDS: 0.94 Total: 24.60 kcal
Atomic # 6 Polarization: 23.72 SS G_CDS: 7.36 Total: 31.08 kcal
Atomic # 7 Polarization: -128.30 SS G_CDS: -7.02 Total: -135.32 kcal
Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.70 kcal
Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal
Total: -59.78 3.25 -56.53 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001029504723.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.243 kcal
(2) G-P(sol) polarization free energy of solvation -59.782 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.532 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.711 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds