Wall clock time and date at job start Wed Apr 1 2020 03:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35366 * 126.38574 * 2 1 4 4 C 1.41504 * 105.50126 * 180.08267 * 3 2 1 5 5 C 1.47708 * 126.51543 * 179.90096 * 4 3 2 6 6 O 1.21572 * 120.00037 * 359.71230 * 5 4 3 7 7 N 1.34775 * 119.99715 * 179.71477 * 5 4 3 8 8 C 1.47859 * 126.94990 * 359.97438 * 7 5 4 9 9 C 1.55482 * 105.17781 * 181.92262 * 8 7 5 10 10 H 1.08997 * 116.03733 * 159.74881 * 9 8 7 11 11 C 1.57437 * 99.67994 * 32.85900 * 9 8 7 12 12 C 1.49294 * 126.94226 * 179.97438 * 7 5 4 13 13 H 1.09003 * 116.15309 * 15.84554 * 12 7 5 14 14 C 1.56021 * 104.09557 * 246.69663 * 12 7 5 15 15 N 1.47864 * 105.10416 * 288.77087 * 14 12 7 16 16 C 1.36938 * 126.94685 * 181.97612 * 15 14 12 17 17 H 1.07999 * 120.00325 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99817 * 0.02779 * 16 15 14 19 19 N 1.31621 * 119.99673 * 359.71804 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16 22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16 24 24 N 1.31806 * 106.96370 * 359.64118 * 4 3 2 25 25 N 1.28470 * 110.07250 * 0.22406 * 24 4 3 26 26 C 1.46500 * 124.88073 * 180.02562 * 25 24 4 27 27 H 1.09004 * 109.47028 * 180.02562 * 26 25 24 28 28 C 1.52998 * 109.47300 * 300.02375 * 26 25 24 29 29 C 1.53000 * 109.47265 * 60.02413 * 26 25 24 30 30 C 1.53001 * 117.49987 * 128.74285 * 29 26 25 31 31 C 1.53004 * 117.49871 * 60.08474 * 29 26 25 32 32 H 1.09000 * 109.47573 * 270.32576 * 1 2 3 33 33 H 1.09003 * 109.47272 * 30.32316 * 1 2 3 34 34 H 1.09004 * 109.47291 * 150.32040 * 1 2 3 35 35 H 1.08000 * 127.24623 * 359.97049 * 3 2 1 36 36 H 1.09003 * 110.31362 * 300.91355 * 8 7 5 37 37 H 1.09008 * 110.31865 * 62.98849 * 8 7 5 38 38 H 1.09001 * 112.52781 * 191.70719 * 11 9 8 39 39 H 1.09000 * 112.31808 * 64.17222 * 11 9 8 40 40 H 1.08995 * 110.31611 * 169.85983 * 14 12 7 41 41 H 1.09002 * 110.30947 * 47.67196 * 14 12 7 42 42 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46899 * 60.00391 * 28 26 25 44 44 H 1.09002 * 109.47181 * 180.02562 * 28 26 25 45 45 H 1.08997 * 109.47171 * 300.00101 * 28 26 25 46 46 H 1.08996 * 115.55209 * 274.41329 * 29 26 25 47 47 H 1.09000 * 117.49695 * 0.02562 * 30 29 26 48 48 H 1.09005 * 117.50008 * 145.01851 * 30 29 26 49 49 H 1.08995 * 117.50026 * 214.97944 * 31 29 26 50 50 H 1.09004 * 117.49906 * 359.97438 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5853 -0.0020 5 6 4.8764 1.3811 -0.0048 6 8 4.8213 2.5956 -0.0109 7 7 6.0729 0.7608 -0.0006 8 6 6.3182 -0.6972 0.0073 9 6 7.8646 -0.8497 0.0596 10 1 8.2390 -1.8110 0.4112 11 6 8.2272 0.4216 0.9146 12 6 7.4187 1.4072 -0.0031 13 1 7.4441 2.4651 0.2584 14 6 8.0214 1.0247 -1.3905 15 7 8.3249 -0.4192 -1.2938 16 6 8.9054 -1.2044 -2.2539 17 1 9.0760 -2.2536 -2.0630 18 6 9.2747 -0.6517 -3.4725 19 7 9.0618 0.6258 -3.7072 20 14 10.0673 -1.7224 -4.7819 21 1 9.0125 -2.3069 -5.6486 22 1 10.9851 -0.8970 -5.6076 23 1 10.8343 -2.8146 -4.1308 24 7 3.5419 -0.7296 0.0049 25 7 2.3079 -1.0870 0.0062 26 6 1.8376 -2.4744 0.0138 27 1 0.7476 -2.4886 0.0127 28 6 2.3581 -3.1963 -1.2307 29 6 2.3556 -3.1818 1.2677 30 6 1.3351 -3.9253 2.1319 31 6 1.9409 -2.6086 2.6243 32 1 -0.3634 0.0058 1.0276 33 1 -0.3634 0.8871 -0.5189 34 1 -0.3634 -0.8929 -0.5089 35 1 2.0056 2.1260 -0.0004 36 1 5.8624 -1.1528 0.8865 37 1 5.9238 -1.1524 -0.9012 38 1 9.2960 0.6353 0.9126 39 1 7.8225 0.3698 1.9254 40 1 8.9336 1.5916 -1.5761 41 1 7.2942 1.2063 -2.1819 42 1 9.3195 1.0120 -4.5589 43 1 3.4481 -3.1822 -1.2296 44 1 2.0078 -4.2285 -1.2253 45 1 1.9891 -2.6925 -2.1240 46 1 3.3542 -3.6109 1.1867 47 1 0.2948 -3.9109 1.8068 48 1 1.6626 -4.8434 2.6197 49 1 2.6665 -2.6610 3.4359 50 1 1.2993 -1.7273 2.6235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032489657.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:16 Heat of formation + Delta-G solvation = 130.454250 kcal Electronic energy + Delta-G solvation = -31527.650562 eV Core-core repulsion = 27559.490843 eV Total energy + Delta-G solvation = -3968.159719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.62012 -39.80758 -38.20215 -37.43618 -33.80253 -33.50094 -32.75375 -31.39199 -29.99065 -28.88892 -28.42628 -26.99561 -25.21675 -24.94290 -23.74244 -22.73709 -22.64331 -21.01907 -20.63702 -19.89377 -19.34407 -18.23307 -17.12641 -16.86794 -16.19740 -15.92662 -15.63428 -15.43013 -14.94776 -14.74565 -14.30072 -14.00892 -13.85652 -13.31239 -13.25084 -13.19446 -12.96713 -12.94937 -12.62343 -12.36794 -12.08031 -12.02860 -11.93288 -11.79960 -11.52505 -11.46563 -11.22113 -10.93538 -10.80365 -10.75332 -10.72484 -10.57443 -10.51349 -10.45304 -10.13466 -9.99805 -9.57878 -9.52521 -8.92609 -8.77626 -8.64091 -7.83348 -6.83952 -5.69970 -3.03753 1.89552 2.26919 2.36811 3.40539 3.44977 3.46037 3.47785 3.57747 3.91275 3.96219 4.39958 4.46822 4.47765 4.52318 4.64193 4.77659 4.83086 4.86737 5.04872 5.16155 5.24401 5.26488 5.33042 5.33690 5.43138 5.48162 5.54743 5.58501 5.62343 5.68253 5.72372 5.73566 5.78193 5.80758 5.87300 5.98202 6.02648 6.19169 6.34815 6.41346 6.52289 6.56543 6.70696 6.70882 6.84743 6.96187 7.49733 7.58557 7.79050 8.10733 8.16997 8.24592 8.75553 9.17153 9.78080 10.48448 11.42246 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003501 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.859175 B = 7995.538734 C = 8757.450599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.002 4.002 3 C -0.180 4.180 4 C -0.006 4.006 5 C 0.613 3.387 6 O -0.553 6.553 7 N -0.593 5.593 8 C 0.102 3.898 9 C 0.137 3.863 10 H 0.104 0.896 11 C -0.150 4.150 12 C 0.098 3.902 13 H 0.114 0.886 14 C 0.175 3.825 15 N -0.598 5.598 16 C -0.228 4.228 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.911 3.089 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 N -0.239 5.239 25 N -0.275 5.275 26 C 0.179 3.821 27 H 0.104 0.896 28 C -0.161 4.161 29 C -0.165 4.165 30 C -0.168 4.168 31 C -0.168 4.168 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.157 0.843 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.253 0.747 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.316 -7.801 12.036 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C -0.208 4.208 4 C -0.166 4.166 5 C 0.400 3.600 6 O -0.430 6.430 7 N -0.325 5.325 8 C -0.024 4.024 9 C 0.028 3.972 10 H 0.122 0.878 11 C -0.189 4.189 12 C -0.004 4.004 13 H 0.132 0.868 14 C 0.050 3.950 15 N -0.322 5.322 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 N -0.074 5.074 25 N -0.064 5.064 26 C 0.079 3.921 27 H 0.122 0.878 28 C -0.219 4.219 29 C -0.183 4.183 30 C -0.205 4.205 31 C -0.205 4.205 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.174 0.826 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.114 0.886 48 H 0.119 0.881 49 H 0.116 0.884 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.700 -8.193 11.737 22.764 hybrid contribution -0.168 0.160 -0.918 0.947 sum -17.868 -8.034 10.818 22.380 Atomic orbital electron populations 1.20303 0.87277 1.03521 1.02816 1.21290 0.95074 0.86973 1.09193 1.21446 0.90741 0.99223 1.09436 1.21918 0.94911 0.89745 1.10002 1.16491 0.80764 0.85863 0.76931 1.90737 1.86424 1.12856 1.53028 1.49016 1.04778 1.08740 1.69942 1.23094 0.98708 0.79678 1.00881 1.23209 0.90567 0.96012 0.87419 0.87837 1.24191 1.00158 0.97678 0.96911 1.24379 0.79693 0.97006 0.99352 0.86771 1.21913 0.98180 0.84731 0.90145 1.45226 1.70434 1.05565 1.10968 1.19037 1.32117 0.91732 0.92732 0.90263 1.24801 1.01508 0.96185 0.97831 1.69922 1.52225 1.10640 1.23838 0.86136 0.78757 0.79150 0.81792 1.21745 1.21714 1.20679 1.73681 1.01131 1.14680 1.17884 1.45651 1.02950 1.06486 1.51328 1.21090 0.98740 0.76303 0.95996 0.87785 1.22121 1.03905 1.00368 0.95468 1.22573 1.00878 1.04149 0.90741 1.23040 0.97961 0.96445 1.03086 1.22893 1.03631 0.97047 0.96959 0.90771 0.89714 0.91576 0.82552 0.92644 0.90965 0.89783 0.91742 0.92607 0.93524 0.93663 0.90212 0.90254 0.91743 0.86293 0.88602 0.88136 0.88357 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.92 36.00 0.36 -0.25 16 2 C 0.00 -0.02 6.92 -82.21 -0.57 -0.59 16 3 C -0.18 -2.77 10.73 -39.36 -0.42 -3.19 16 4 C -0.01 -0.10 7.00 -82.77 -0.58 -0.68 16 5 C 0.61 12.98 7.90 -12.39 -0.10 12.88 16 6 O -0.55 -12.93 17.27 5.30 0.09 -12.84 16 7 N -0.59 -12.25 2.95 -158.26 -0.47 -12.71 16 8 C 0.10 1.96 4.96 -1.98 -0.01 1.95 16 9 C 0.14 2.70 5.51 -62.64 -0.35 2.36 16 10 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 11 C -0.15 -2.70 6.83 -22.10 -0.15 -2.85 16 12 C 0.10 2.03 5.24 -62.55 -0.33 1.70 16 13 H 0.11 2.28 8.05 -51.93 -0.42 1.86 16 14 C 0.18 4.40 4.76 -1.68 -0.01 4.40 16 15 N -0.60 -14.94 3.02 -156.44 -0.47 -15.42 16 16 C -0.23 -6.23 10.38 -15.06 -0.16 -6.39 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -27.45 10.56 55.49 0.59 -26.86 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 N -0.24 -3.89 9.41 33.42 0.31 -3.58 16 25 N -0.27 -3.51 2.92 -50.66 -0.15 -3.66 16 26 C 0.18 1.65 3.13 -67.93 -0.21 1.44 16 27 H 0.10 0.70 6.30 -51.93 -0.33 0.38 16 28 C -0.16 -1.51 9.35 37.16 0.35 -1.16 16 29 C -0.16 -1.42 5.21 -90.62 -0.47 -1.89 16 30 C -0.17 -1.06 10.18 -26.69 -0.27 -1.33 16 31 C -0.17 -1.41 10.13 -26.69 -0.27 -1.68 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.39 7.03 -51.93 -0.36 0.03 16 35 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.06 0.96 7.74 -51.93 -0.40 0.56 16 37 H 0.07 1.57 7.93 -51.92 -0.41 1.16 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.52 7.47 -51.93 -0.39 1.13 16 41 H 0.05 1.36 7.67 -51.93 -0.40 0.96 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.12 1.15 8.11 -51.93 -0.42 0.73 16 47 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -34.14 402.74 -10.50 -44.64 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.17 Total: 2.82 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.28 Total: 4.42 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.19 Total: -62.23 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.14 -10.50 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032489657.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.093 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds