Wall clock time and date at job start Wed Apr 1 2020 03:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35366 * 126.38574 * 2 1 4 4 C 1.41504 * 105.50126 * 180.08267 * 3 2 1 5 5 C 1.47708 * 126.51543 * 179.90096 * 4 3 2 6 6 O 1.21572 * 120.00037 * 359.71230 * 5 4 3 7 7 N 1.34775 * 119.99715 * 179.71477 * 5 4 3 8 8 C 1.47859 * 126.94990 * 359.97438 * 7 5 4 9 9 C 1.55482 * 105.17781 * 181.92262 * 8 7 5 10 10 H 1.08997 * 116.03733 * 159.74881 * 9 8 7 11 11 C 1.57437 * 99.67994 * 32.85900 * 9 8 7 12 12 C 1.49294 * 126.94226 * 179.97438 * 7 5 4 13 13 H 1.09003 * 116.15309 * 15.84554 * 12 7 5 14 14 C 1.56021 * 104.09557 * 246.69663 * 12 7 5 15 15 N 1.47864 * 105.10416 * 288.77087 * 14 12 7 16 16 C 1.36938 * 126.94685 * 181.97612 * 15 14 12 17 17 H 1.07999 * 120.00325 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99817 * 0.02779 * 16 15 14 19 19 N 1.31621 * 119.99673 * 359.71804 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16 22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16 24 24 N 1.31806 * 106.96370 * 359.64118 * 4 3 2 25 25 N 1.28470 * 110.07250 * 0.22406 * 24 4 3 26 26 C 1.46500 * 124.88073 * 180.02562 * 25 24 4 27 27 H 1.09004 * 109.47028 * 180.02562 * 26 25 24 28 28 C 1.52998 * 109.47300 * 300.02375 * 26 25 24 29 29 C 1.53000 * 109.47265 * 60.02413 * 26 25 24 30 30 C 1.53001 * 117.49987 * 128.74285 * 29 26 25 31 31 C 1.53004 * 117.49871 * 60.08474 * 29 26 25 32 32 H 1.09000 * 109.47573 * 270.32576 * 1 2 3 33 33 H 1.09003 * 109.47272 * 30.32316 * 1 2 3 34 34 H 1.09004 * 109.47291 * 150.32040 * 1 2 3 35 35 H 1.08000 * 127.24623 * 359.97049 * 3 2 1 36 36 H 1.09003 * 110.31362 * 300.91355 * 8 7 5 37 37 H 1.09008 * 110.31865 * 62.98849 * 8 7 5 38 38 H 1.09001 * 112.52781 * 191.70719 * 11 9 8 39 39 H 1.09000 * 112.31808 * 64.17222 * 11 9 8 40 40 H 1.08995 * 110.31611 * 169.85983 * 14 12 7 41 41 H 1.09002 * 110.30947 * 47.67196 * 14 12 7 42 42 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46899 * 60.00391 * 28 26 25 44 44 H 1.09002 * 109.47181 * 180.02562 * 28 26 25 45 45 H 1.08997 * 109.47171 * 300.00101 * 28 26 25 46 46 H 1.08996 * 115.55209 * 274.41329 * 29 26 25 47 47 H 1.09000 * 117.49695 * 0.02562 * 30 29 26 48 48 H 1.09005 * 117.50008 * 145.01851 * 30 29 26 49 49 H 1.08995 * 117.50026 * 214.97944 * 31 29 26 50 50 H 1.09004 * 117.49906 * 359.97438 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5853 -0.0020 5 6 4.8764 1.3811 -0.0048 6 8 4.8213 2.5956 -0.0109 7 7 6.0729 0.7608 -0.0006 8 6 6.3182 -0.6972 0.0073 9 6 7.8646 -0.8497 0.0596 10 1 8.2390 -1.8110 0.4112 11 6 8.2272 0.4216 0.9146 12 6 7.4187 1.4072 -0.0031 13 1 7.4441 2.4651 0.2584 14 6 8.0214 1.0247 -1.3905 15 7 8.3249 -0.4192 -1.2938 16 6 8.9054 -1.2044 -2.2539 17 1 9.0760 -2.2536 -2.0630 18 6 9.2747 -0.6517 -3.4725 19 7 9.0618 0.6258 -3.7072 20 14 10.0673 -1.7224 -4.7819 21 1 9.0125 -2.3069 -5.6486 22 1 10.9851 -0.8970 -5.6076 23 1 10.8343 -2.8146 -4.1308 24 7 3.5419 -0.7296 0.0049 25 7 2.3079 -1.0870 0.0062 26 6 1.8376 -2.4744 0.0138 27 1 0.7476 -2.4886 0.0127 28 6 2.3581 -3.1963 -1.2307 29 6 2.3556 -3.1818 1.2677 30 6 1.3351 -3.9253 2.1319 31 6 1.9409 -2.6086 2.6243 32 1 -0.3634 0.0058 1.0276 33 1 -0.3634 0.8871 -0.5189 34 1 -0.3634 -0.8929 -0.5089 35 1 2.0056 2.1260 -0.0004 36 1 5.8624 -1.1528 0.8865 37 1 5.9238 -1.1524 -0.9012 38 1 9.2960 0.6353 0.9126 39 1 7.8225 0.3698 1.9254 40 1 8.9336 1.5916 -1.5761 41 1 7.2942 1.2063 -2.1819 42 1 9.3195 1.0120 -4.5589 43 1 3.4481 -3.1822 -1.2296 44 1 2.0078 -4.2285 -1.2253 45 1 1.9891 -2.6925 -2.1240 46 1 3.3542 -3.6109 1.1867 47 1 0.2948 -3.9109 1.8068 48 1 1.6626 -4.8434 2.6197 49 1 2.6665 -2.6610 3.4359 50 1 1.2993 -1.7273 2.6235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032489657.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:15 Heat of formation + Delta-G solvation = 110.369579 kcal Electronic energy + Delta-G solvation = -31528.521498 eV Core-core repulsion = 27559.490843 eV Total energy + Delta-G solvation = -3969.030655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.72176 -41.50151 -39.33613 -38.68934 -35.49614 -34.63971 -33.77502 -33.13453 -31.22865 -30.50534 -30.24814 -27.87342 -26.99665 -26.29875 -25.06584 -24.04070 -23.26914 -22.03808 -21.99098 -21.46867 -20.69870 -19.87310 -18.67816 -18.05531 -17.57547 -17.30991 -17.23134 -16.40696 -16.26528 -16.06292 -15.78568 -15.53881 -14.98993 -14.90288 -14.70191 -14.13023 -13.87137 -13.81980 -13.66095 -13.57518 -13.40416 -13.37208 -13.19238 -13.11195 -12.85933 -12.77138 -12.71264 -12.43434 -12.34926 -12.20463 -12.18433 -12.06249 -11.92796 -11.60169 -11.53960 -11.37198 -11.22364 -11.16723 -10.74597 -10.10535 -9.84048 -9.53727 -8.91832 -7.84607 -5.20697 0.59168 1.14020 1.43447 1.44852 1.47021 1.55888 1.97928 2.39534 2.47777 2.89686 3.17755 3.31579 3.37471 3.52286 3.70211 3.73767 3.76775 3.88257 3.91292 3.98589 4.02496 4.07333 4.17634 4.18109 4.37962 4.43433 4.58871 4.65512 4.66617 4.69908 4.72829 4.77641 4.80995 4.87520 4.95934 4.99087 4.99645 5.03077 5.05968 5.10315 5.11485 5.22157 5.22751 5.25879 5.39309 5.43110 5.55412 5.63369 5.97423 6.08733 6.57530 6.89581 7.01948 7.17876 7.69685 8.41135 9.26889 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003501 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.859175 B = 7995.538734 C = 8757.450599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.020 3.980 3 C -0.207 4.207 4 C -0.044 4.044 5 C 0.604 3.396 6 O -0.587 6.587 7 N -0.598 5.598 8 C 0.119 3.881 9 C 0.133 3.867 10 H 0.134 0.866 11 C -0.125 4.125 12 C 0.099 3.901 13 H 0.119 0.881 14 C 0.190 3.810 15 N -0.615 5.615 16 C -0.231 4.231 17 H 0.095 0.905 18 C -0.071 4.071 19 N -0.958 5.958 20 Si 0.979 3.021 21 H -0.292 1.292 22 H -0.299 1.299 23 H -0.260 1.260 24 N -0.252 5.252 25 N -0.265 5.265 26 C 0.172 3.828 27 H 0.142 0.858 28 C -0.158 4.158 29 C -0.180 4.180 30 C -0.136 4.136 31 C -0.181 4.181 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.024 0.976 41 H -0.008 1.008 42 H 0.244 0.756 43 H 0.047 0.953 44 H 0.110 0.890 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.090 0.910 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.805 -10.996 14.004 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.235 4.235 4 C -0.203 4.203 5 C 0.393 3.607 6 O -0.467 6.467 7 N -0.330 5.330 8 C -0.005 4.005 9 C 0.027 3.973 10 H 0.152 0.848 11 C -0.164 4.164 12 C -0.003 4.003 13 H 0.137 0.863 14 C 0.064 3.936 15 N -0.340 5.340 16 C -0.360 4.360 17 H 0.113 0.887 18 C -0.264 4.264 19 N -0.607 5.607 20 Si 0.807 3.193 21 H -0.219 1.219 22 H -0.226 1.226 23 H -0.184 1.184 24 N -0.089 5.089 25 N -0.055 5.055 26 C 0.074 3.926 27 H 0.159 0.841 28 C -0.216 4.216 29 C -0.199 4.199 30 C -0.174 4.174 31 C -0.219 4.219 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.175 0.825 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.042 0.958 41 H 0.010 0.990 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.128 0.872 45 H 0.075 0.925 46 H 0.121 0.879 47 H 0.138 0.862 48 H 0.129 0.871 49 H 0.108 0.892 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.192 -11.444 13.754 26.978 hybrid contribution 0.486 1.071 -1.507 1.911 sum -19.706 -10.373 12.247 25.415 Atomic orbital electron populations 1.20538 0.83250 1.05283 1.04788 1.21929 0.97139 0.85536 1.05827 1.21628 0.90200 1.00467 1.11254 1.21656 0.94562 0.90738 1.13299 1.17018 0.81754 0.85897 0.75996 1.90687 1.87113 1.14368 1.54579 1.49101 1.04670 1.09259 1.69923 1.22866 0.98291 0.78869 1.00524 1.23605 0.90470 0.98114 0.85152 0.84813 1.24087 1.00063 0.94663 0.97562 1.24288 0.80440 0.98223 0.97385 0.86311 1.21496 0.95490 0.85268 0.91326 1.45480 1.70274 1.05378 1.12849 1.19544 1.30643 0.92605 0.93174 0.88745 1.25683 1.03010 0.97364 1.00314 1.70174 1.54110 1.12627 1.23800 0.85066 0.77582 0.77752 0.78876 1.21933 1.22601 1.18450 1.73579 1.03308 1.13672 1.18291 1.46128 1.02041 1.08166 1.49159 1.21545 1.00672 0.74250 0.96149 0.84080 1.22110 1.01862 1.02257 0.95349 1.22487 1.01244 1.05482 0.90653 1.23163 0.98383 0.95526 1.00283 1.22902 1.04089 0.98479 0.96403 0.88490 0.88786 0.89035 0.82529 0.90048 0.93925 0.89318 0.88255 0.95761 0.98987 0.94704 0.93349 0.87191 0.92477 0.87940 0.86207 0.87146 0.89165 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.92 71.23 0.71 -0.18 16 2 C 0.02 0.45 6.92 41.40 0.29 0.74 16 3 C -0.21 -6.43 10.73 22.41 0.24 -6.18 16 4 C -0.04 -1.67 7.00 42.46 0.30 -1.38 16 5 C 0.60 26.85 7.90 86.75 0.69 27.54 16 6 O -0.59 -29.02 17.27 -3.94 -0.07 -29.09 16 7 N -0.60 -25.52 2.95 -772.90 -2.28 -27.80 16 8 C 0.12 4.61 4.96 86.97 0.43 5.04 16 9 C 0.13 5.14 5.51 46.87 0.26 5.40 16 10 H 0.13 4.38 8.14 -2.39 -0.02 4.36 16 11 C -0.12 -4.32 6.83 33.59 0.23 -4.09 16 12 C 0.10 4.25 5.24 46.93 0.25 4.50 16 13 H 0.12 4.94 8.05 -2.39 -0.02 4.92 16 14 C 0.19 10.15 4.76 87.17 0.42 10.56 16 15 N -0.62 -31.50 3.02 -648.87 -1.96 -33.46 16 16 C -0.23 -12.79 10.38 84.03 0.87 -11.92 16 17 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 18 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 19 N -0.96 -60.39 10.56 21.65 0.23 -60.16 16 20 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 N -0.25 -8.25 9.41 -48.18 -0.45 -8.71 16 25 N -0.27 -6.38 2.92 -314.20 -0.92 -7.30 16 26 C 0.17 2.68 3.13 44.99 0.14 2.82 16 27 H 0.14 1.17 6.30 -2.38 -0.02 1.16 16 28 C -0.16 -2.68 9.35 71.98 0.67 -2.01 16 29 C -0.18 -2.64 5.21 -10.79 -0.06 -2.70 16 30 C -0.14 -1.15 10.18 30.62 0.31 -0.84 16 31 C -0.18 -2.56 10.13 30.62 0.31 -2.25 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.59 7.03 -2.39 -0.02 0.57 16 35 H 0.16 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.08 2.74 7.74 -2.39 -0.02 2.73 16 37 H 0.04 1.91 7.93 -2.38 -0.02 1.89 16 38 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.02 1.42 7.47 -2.39 -0.02 1.40 16 41 H -0.01 -0.51 7.67 -2.39 -0.02 -0.53 16 42 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 46 H 0.10 1.85 8.11 -2.39 -0.02 1.83 16 47 H 0.12 0.49 8.05 -2.39 -0.02 0.47 16 48 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -81.42 402.74 4.02 -77.40 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.93 Total: 19.18 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 6.51 Total: 21.37 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -5.38 Total: -137.43 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.07 Total: -29.09 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -81.42 4.02 -77.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032489657.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.772 kcal (2) G-P(sol) polarization free energy of solvation -81.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds