Wall clock time and date at job start Wed Apr 1 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38805 * 120.42345 * 2 1 4 4 C 1.39499 * 118.26282 * 180.27467 * 3 2 1 5 5 C 1.48453 * 120.55160 * 179.72584 * 4 3 2 6 6 O 1.21484 * 119.99887 * 9.03415 * 5 4 3 7 7 N 1.34778 * 120.00272 * 189.03813 * 5 4 3 8 8 C 1.46925 * 120.55526 * 187.23655 * 7 5 4 9 9 C 1.52865 * 108.94552 * 234.29409 * 8 7 5 10 10 C 1.52099 * 109.52268 * 306.94785 * 9 8 7 11 11 C 1.54390 * 110.51221 * 295.74596 * 10 9 8 12 12 C 1.54453 * 102.87267 * 276.65896 * 11 10 9 13 13 N 1.47081 * 107.29814 * 338.49921 * 12 11 10 14 14 C 1.36944 * 125.62913 * 179.00700 * 13 12 11 15 15 H 1.07992 * 119.99909 * 180.02562 * 14 13 12 16 16 C 1.38817 * 119.99779 * 0.03027 * 14 13 12 17 17 N 1.31620 * 119.99842 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47067 * 89.99853 * 18 16 14 20 20 H 1.48502 * 109.47130 * 209.99807 * 18 16 14 21 21 H 1.48501 * 109.47286 * 329.99894 * 18 16 14 22 22 C 1.47568 * 108.74532 * 359.01043 * 13 12 11 23 23 C 1.52106 * 111.60316 * 59.15130 * 10 9 8 24 24 C 1.46924 * 120.55003 * 7.51023 * 7 5 4 25 25 N 1.33099 * 118.89905 * 359.48924 * 4 3 2 26 26 C 1.31555 * 120.73924 * 0.51809 * 25 4 3 27 27 C 1.50699 * 119.04742 * 179.75252 * 26 25 4 28 28 N 1.31921 * 121.91457 * 359.73500 * 26 25 4 29 29 H 1.08994 * 109.47253 * 90.00378 * 1 2 3 30 30 H 1.08996 * 109.47039 * 210.00516 * 1 2 3 31 31 H 1.09000 * 109.47481 * 330.00041 * 1 2 3 32 32 H 1.08005 * 120.86922 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.60298 * 354.10999 * 8 7 5 34 34 H 1.09004 * 109.59950 * 114.57937 * 8 7 5 35 35 H 1.09008 * 109.54823 * 186.86147 * 9 8 7 36 36 H 1.09005 * 109.32609 * 66.89686 * 9 8 7 37 37 H 1.09001 * 110.73464 * 35.00900 * 11 10 9 38 38 H 1.09004 * 110.73295 * 158.31284 * 11 10 9 39 39 H 1.09005 * 109.87728 * 97.92655 * 12 11 10 40 40 H 1.09001 * 109.88274 * 219.07329 * 12 11 10 41 41 H 0.96996 * 119.99476 * 180.02562 * 17 16 14 42 42 H 1.09001 * 110.37917 * 264.49796 * 22 13 12 43 43 H 1.08992 * 110.38163 * 142.14357 * 22 13 12 44 44 H 1.08998 * 109.47729 * 180.71853 * 23 10 9 45 45 H 1.08999 * 109.47589 * 60.70116 * 23 10 9 46 46 H 1.09004 * 109.60239 * 245.41418 * 24 7 5 47 47 H 1.09007 * 109.60489 * 5.89607 * 24 7 5 48 48 H 1.09005 * 109.46907 * 269.98213 * 27 26 25 49 49 H 1.09001 * 109.46763 * 29.98135 * 27 26 25 50 50 H 1.08994 * 109.47302 * 149.98078 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 -0.0059 5 6 4.4061 2.3934 -0.0123 6 8 3.8608 3.4664 0.1527 7 7 5.7394 2.3371 -0.2013 8 6 6.5663 3.5425 -0.0533 9 6 7.3836 3.7435 -1.3294 10 6 8.1463 2.4674 -1.6508 11 6 9.1793 2.1615 -0.5449 12 6 10.3862 3.0361 -0.9499 13 7 10.2512 3.3303 -2.3847 14 6 11.1106 4.0964 -3.1262 15 1 10.9230 4.2540 -4.1780 16 6 12.2228 4.6705 -2.5259 17 7 12.4511 4.4788 -1.2439 18 14 13.3954 5.7150 -3.5375 19 1 12.9531 7.1321 -3.5010 20 1 14.7650 5.6092 -2.9733 21 1 13.4003 5.2340 -4.9425 22 6 9.0369 2.6636 -2.8933 23 6 7.2067 1.2869 -1.8439 24 6 6.3894 1.0705 -0.5646 25 7 4.2028 -0.0443 -0.0009 26 6 3.4955 -1.1536 -0.0007 27 6 4.2130 -2.4788 -0.0006 28 7 2.1764 -1.1396 -0.0003 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6911 2.1442 -0.0004 33 1 5.9246 4.4087 0.1084 34 1 7.2411 3.4213 0.7942 35 1 8.0889 4.5621 -1.1857 36 1 6.7119 3.9829 -2.1539 37 1 8.7980 2.4585 0.4321 38 1 9.4490 1.1054 -0.5502 39 1 10.3792 3.9646 -0.3789 40 1 11.3143 2.4941 -0.7684 41 1 13.2281 4.8802 -0.8244 42 1 9.2898 1.6996 -3.3348 43 1 8.5343 3.2967 -3.6243 44 1 7.7886 0.3908 -2.0593 45 1 6.5326 1.4913 -2.6756 46 1 7.0502 0.7540 0.2425 47 1 5.6310 0.3074 -0.7399 48 1 4.3857 -2.7985 -1.0284 49 1 5.1688 -2.3744 0.5129 50 1 3.6036 -3.2219 0.5135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035238015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:33 Heat of formation + Delta-G solvation = 54.040272 kcal Electronic energy + Delta-G solvation = -30939.699732 eV Core-core repulsion = 26968.226454 eV Total energy + Delta-G solvation = -3971.473277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.78784 -40.15493 -38.57768 -35.94815 -35.02881 -33.86739 -32.96666 -30.99516 -30.66138 -29.66209 -28.70128 -28.59618 -26.93585 -25.19736 -24.05463 -23.01886 -22.56961 -22.34191 -20.26203 -19.99270 -18.66271 -17.83105 -16.96595 -16.48846 -16.19994 -16.02536 -15.82084 -15.03045 -14.99059 -14.88302 -14.53052 -13.97264 -13.86379 -13.82514 -13.74200 -13.42592 -13.29012 -12.91187 -12.77779 -12.67522 -12.62355 -12.49194 -12.09316 -11.89147 -11.62649 -11.36006 -11.04664 -10.98127 -10.88655 -10.79855 -10.61022 -10.56148 -10.46454 -10.15990 -10.01786 -9.79144 -9.77794 -9.63364 -9.59224 -8.98311 -8.56923 -8.50870 -6.77425 -5.67572 -3.00201 0.18480 0.48797 2.52550 2.75237 3.37082 3.41735 3.45180 3.46871 3.48584 3.53840 4.01898 4.45814 4.51039 4.53177 4.85386 4.96712 5.05422 5.06217 5.09558 5.13009 5.17501 5.20933 5.31938 5.36623 5.42193 5.52051 5.54611 5.59187 5.59779 5.69573 5.84002 5.90325 6.00278 6.07030 6.12586 6.18637 6.26854 6.33407 6.37887 6.49058 6.50561 6.58944 6.68137 6.72882 6.88924 7.00911 7.33561 7.59595 7.60614 7.68210 7.87102 7.95535 8.30237 9.26624 9.86972 10.53949 11.44033 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.002419 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.698603 B =11570.694135 C =12089.029779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.182 3.818 3 C -0.179 4.179 4 C 0.145 3.855 5 C 0.564 3.436 6 O -0.533 6.533 7 N -0.577 5.577 8 C 0.108 3.892 9 C -0.109 4.109 10 C -0.073 4.073 11 C -0.136 4.136 12 C 0.180 3.820 13 N -0.604 5.604 14 C -0.225 4.225 15 H 0.076 0.924 16 C -0.010 4.010 17 N -0.922 5.922 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.146 3.854 23 C -0.117 4.117 24 C 0.072 3.928 25 N -0.489 5.489 26 C 0.317 3.683 27 C -0.088 4.088 28 N -0.509 5.509 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.251 0.749 42 H 0.017 0.983 43 H 0.035 0.965 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.142 0.858 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.391 -12.982 4.400 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.034 3.966 3 C -0.202 4.202 4 C -0.001 4.001 5 C 0.349 3.651 6 O -0.410 6.410 7 N -0.307 5.307 8 C -0.013 4.013 9 C -0.147 4.147 10 C -0.074 4.074 11 C -0.174 4.174 12 C 0.055 3.945 13 N -0.331 5.331 14 C -0.354 4.354 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.020 3.980 23 C -0.155 4.155 24 C -0.050 4.050 25 N -0.207 5.207 26 C 0.051 3.949 27 C -0.146 4.146 28 N -0.226 5.226 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.177 0.823 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.158 0.842 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.951 -13.113 4.534 25.968 hybrid contribution 0.523 1.434 -0.567 1.628 sum -21.428 -11.679 3.967 24.724 Atomic orbital electron populations 1.20822 0.87122 1.04432 1.04047 1.21852 0.97897 0.87596 0.89244 1.22762 0.94504 1.01373 1.01564 1.21746 0.92157 0.92436 0.93765 1.17799 0.82236 0.86739 0.78305 1.90780 1.70757 1.28597 1.50862 1.48034 1.05490 1.11815 1.65369 1.21791 0.93449 0.87032 0.99052 1.21527 0.98229 0.98694 0.96209 1.21055 0.94426 0.93948 0.97947 1.22917 0.97395 1.00090 0.96992 1.21136 0.92678 0.96056 0.84587 1.44512 1.24798 1.57853 1.05905 1.19050 1.01828 1.22207 0.92266 0.90623 1.24782 0.98663 1.00955 0.96160 1.69971 1.29299 1.48444 1.09297 0.86143 0.80449 0.80273 0.79052 1.21680 1.21746 1.20787 1.21475 0.87721 0.95365 0.93428 1.21769 0.97857 0.98726 0.97179 1.23082 0.99049 0.85958 0.96880 1.68302 1.39160 0.98344 1.14882 1.23484 0.86599 0.94952 0.89913 1.20644 1.00220 0.89409 1.04337 1.68068 1.09767 1.30479 1.14252 0.89296 0.89612 0.89707 0.82273 0.89248 0.90676 0.89288 0.92296 0.92312 0.92569 0.93801 0.94287 0.93863 0.96503 0.94654 0.90688 0.92423 0.91299 0.84183 0.89186 0.89101 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.22 36.01 0.37 -0.18 16 2 C 0.18 1.62 6.83 -82.24 -0.56 1.05 16 3 C -0.18 -1.83 9.40 -38.90 -0.37 -2.19 16 4 C 0.15 1.78 6.61 -82.64 -0.55 1.23 16 5 C 0.56 8.15 7.67 -12.05 -0.09 8.06 16 6 O -0.53 -8.88 15.88 5.38 0.09 -8.79 16 7 N -0.58 -8.13 2.97 -173.75 -0.52 -8.64 16 8 C 0.11 1.61 6.11 -3.88 -0.02 1.59 16 9 C -0.11 -1.80 4.83 -27.26 -0.13 -1.94 16 10 C -0.07 -1.22 0.55 -154.11 -0.08 -1.31 16 11 C -0.14 -2.46 4.92 -25.24 -0.12 -2.58 16 12 C 0.18 4.31 5.00 -2.96 -0.01 4.30 16 13 N -0.60 -15.31 3.39 -170.32 -0.58 -15.88 16 14 C -0.23 -6.29 10.28 -15.05 -0.15 -6.45 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -27.18 10.31 55.49 0.57 -26.61 16 18 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.15 3.01 6.15 -2.87 -0.02 2.99 16 23 C -0.12 -1.61 4.84 -27.01 -0.13 -1.74 16 24 C 0.07 0.92 5.67 -3.63 -0.02 0.90 16 25 N -0.49 -5.48 6.19 -7.32 -0.05 -5.53 16 26 C 0.32 3.12 7.64 -157.29 -1.20 1.92 16 27 C -0.09 -0.56 10.31 36.01 0.37 -0.19 16 28 N -0.51 -5.06 10.25 -7.00 -0.07 -5.14 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 32 H 0.16 1.44 7.76 -52.48 -0.41 1.04 16 33 H 0.09 1.36 6.99 -51.93 -0.36 1.00 16 34 H 0.08 1.10 6.56 -51.93 -0.34 0.76 16 35 H 0.09 1.70 7.82 -51.92 -0.41 1.30 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.98 6.19 -51.93 -0.32 0.66 16 38 H 0.06 0.96 7.98 -51.93 -0.41 0.55 16 39 H 0.04 1.16 7.39 -51.93 -0.38 0.78 16 40 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 43 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 44 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.87 7.62 -51.93 -0.40 0.47 16 47 H 0.14 1.66 3.97 -83.35 -0.33 1.33 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -32.89 387.48 -10.49 -43.39 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.93 Total: -1.01 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -2.83 Total: 5.10 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.64 Total: -61.80 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.89 -10.49 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035238015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.425 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds