Wall clock time and date at job start Wed Apr 1 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38805 * 120.42345 * 2 1 4 4 C 1.39499 * 118.26282 * 180.27467 * 3 2 1 5 5 C 1.48453 * 120.55160 * 179.72584 * 4 3 2 6 6 O 1.21484 * 119.99887 * 9.03415 * 5 4 3 7 7 N 1.34778 * 120.00272 * 189.03813 * 5 4 3 8 8 C 1.46925 * 120.55526 * 187.23655 * 7 5 4 9 9 C 1.52865 * 108.94552 * 234.29409 * 8 7 5 10 10 C 1.52099 * 109.52268 * 306.94785 * 9 8 7 11 11 C 1.54390 * 110.51221 * 295.74596 * 10 9 8 12 12 C 1.54453 * 102.87267 * 276.65896 * 11 10 9 13 13 N 1.47081 * 107.29814 * 338.49921 * 12 11 10 14 14 C 1.36944 * 125.62913 * 179.00700 * 13 12 11 15 15 H 1.07992 * 119.99909 * 180.02562 * 14 13 12 16 16 C 1.38817 * 119.99779 * 0.03027 * 14 13 12 17 17 N 1.31620 * 119.99842 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47067 * 89.99853 * 18 16 14 20 20 H 1.48502 * 109.47130 * 209.99807 * 18 16 14 21 21 H 1.48501 * 109.47286 * 329.99894 * 18 16 14 22 22 C 1.47568 * 108.74532 * 359.01043 * 13 12 11 23 23 C 1.52106 * 111.60316 * 59.15130 * 10 9 8 24 24 C 1.46924 * 120.55003 * 7.51023 * 7 5 4 25 25 N 1.33099 * 118.89905 * 359.48924 * 4 3 2 26 26 C 1.31555 * 120.73924 * 0.51809 * 25 4 3 27 27 C 1.50699 * 119.04742 * 179.75252 * 26 25 4 28 28 N 1.31921 * 121.91457 * 359.73500 * 26 25 4 29 29 H 1.08994 * 109.47253 * 90.00378 * 1 2 3 30 30 H 1.08996 * 109.47039 * 210.00516 * 1 2 3 31 31 H 1.09000 * 109.47481 * 330.00041 * 1 2 3 32 32 H 1.08005 * 120.86922 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.60298 * 354.10999 * 8 7 5 34 34 H 1.09004 * 109.59950 * 114.57937 * 8 7 5 35 35 H 1.09008 * 109.54823 * 186.86147 * 9 8 7 36 36 H 1.09005 * 109.32609 * 66.89686 * 9 8 7 37 37 H 1.09001 * 110.73464 * 35.00900 * 11 10 9 38 38 H 1.09004 * 110.73295 * 158.31284 * 11 10 9 39 39 H 1.09005 * 109.87728 * 97.92655 * 12 11 10 40 40 H 1.09001 * 109.88274 * 219.07329 * 12 11 10 41 41 H 0.96996 * 119.99476 * 180.02562 * 17 16 14 42 42 H 1.09001 * 110.37917 * 264.49796 * 22 13 12 43 43 H 1.08992 * 110.38163 * 142.14357 * 22 13 12 44 44 H 1.08998 * 109.47729 * 180.71853 * 23 10 9 45 45 H 1.08999 * 109.47589 * 60.70116 * 23 10 9 46 46 H 1.09004 * 109.60239 * 245.41418 * 24 7 5 47 47 H 1.09007 * 109.60489 * 5.89607 * 24 7 5 48 48 H 1.09005 * 109.46907 * 269.98213 * 27 26 25 49 49 H 1.09001 * 109.46763 * 29.98135 * 27 26 25 50 50 H 1.08994 * 109.47302 * 149.98078 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 -0.0059 5 6 4.4061 2.3934 -0.0123 6 8 3.8608 3.4664 0.1527 7 7 5.7394 2.3371 -0.2013 8 6 6.5663 3.5425 -0.0533 9 6 7.3836 3.7435 -1.3294 10 6 8.1463 2.4674 -1.6508 11 6 9.1793 2.1615 -0.5449 12 6 10.3862 3.0361 -0.9499 13 7 10.2512 3.3303 -2.3847 14 6 11.1106 4.0964 -3.1262 15 1 10.9230 4.2540 -4.1780 16 6 12.2228 4.6705 -2.5259 17 7 12.4511 4.4788 -1.2439 18 14 13.3954 5.7150 -3.5375 19 1 12.9531 7.1321 -3.5010 20 1 14.7650 5.6092 -2.9733 21 1 13.4003 5.2340 -4.9425 22 6 9.0369 2.6636 -2.8933 23 6 7.2067 1.2869 -1.8439 24 6 6.3894 1.0705 -0.5646 25 7 4.2028 -0.0443 -0.0009 26 6 3.4955 -1.1536 -0.0007 27 6 4.2130 -2.4788 -0.0006 28 7 2.1764 -1.1396 -0.0003 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6911 2.1442 -0.0004 33 1 5.9246 4.4087 0.1084 34 1 7.2411 3.4213 0.7942 35 1 8.0889 4.5621 -1.1857 36 1 6.7119 3.9829 -2.1539 37 1 8.7980 2.4585 0.4321 38 1 9.4490 1.1054 -0.5502 39 1 10.3792 3.9646 -0.3789 40 1 11.3143 2.4941 -0.7684 41 1 13.2281 4.8802 -0.8244 42 1 9.2898 1.6996 -3.3348 43 1 8.5343 3.2967 -3.6243 44 1 7.7886 0.3908 -2.0593 45 1 6.5326 1.4913 -2.6756 46 1 7.0502 0.7540 0.2425 47 1 5.6310 0.3074 -0.7399 48 1 4.3857 -2.7985 -1.0284 49 1 5.1688 -2.3744 0.5129 50 1 3.6036 -3.2219 0.5135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035238015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:31 Heat of formation + Delta-G solvation = 34.970831 kcal Electronic energy + Delta-G solvation = -30940.526645 eV Core-core repulsion = 26968.226454 eV Total energy + Delta-G solvation = -3972.300190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.60732 -41.33756 -39.92073 -37.35235 -35.86041 -34.80394 -34.49387 -32.46843 -32.15044 -30.46138 -30.16752 -29.25622 -28.42583 -26.46141 -25.69844 -24.16099 -23.69394 -23.19959 -21.95343 -21.27216 -19.73615 -19.17563 -18.45835 -17.69492 -17.23219 -16.96992 -16.79606 -16.67941 -16.35787 -15.95546 -15.68588 -15.61441 -15.00011 -14.83509 -14.72075 -14.41719 -14.23717 -14.16254 -13.92994 -13.81555 -13.41283 -13.32385 -13.17893 -13.07322 -13.02974 -12.96809 -12.75316 -12.47517 -12.21956 -12.09597 -11.97225 -11.91105 -11.76444 -11.63122 -11.56981 -11.45120 -11.22414 -11.10798 -10.68585 -10.49661 -9.91742 -9.69821 -8.85528 -7.83713 -5.18026 -0.65866 -0.21025 1.44351 1.46103 1.53699 1.54635 1.70840 2.49522 2.57587 2.68030 2.88476 3.21251 3.34120 3.60843 3.65330 3.74448 3.82754 3.89534 3.91884 4.13650 4.19213 4.31820 4.32522 4.40673 4.51467 4.61493 4.68032 4.70186 4.72775 4.72988 4.78961 4.79927 4.82696 4.86766 4.92177 4.96201 5.07738 5.08601 5.17382 5.18908 5.20342 5.36140 5.41180 5.47037 5.49262 5.66968 5.73323 5.74498 5.82145 6.21853 6.25078 6.78011 6.93663 7.12692 7.80523 8.45427 9.26445 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.002419 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.698603 B =11570.694135 C =12089.029779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.186 3.814 3 C -0.182 4.182 4 C 0.126 3.874 5 C 0.563 3.437 6 O -0.562 6.562 7 N -0.579 5.579 8 C 0.117 3.883 9 C -0.101 4.101 10 C -0.059 4.059 11 C -0.118 4.118 12 C 0.190 3.810 13 N -0.625 5.625 14 C -0.239 4.239 15 H 0.079 0.921 16 C -0.067 4.067 17 N -0.951 5.951 18 Si 0.976 3.024 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.270 1.270 22 C 0.141 3.859 23 C -0.108 4.108 24 C 0.077 3.923 25 N -0.498 5.498 26 C 0.311 3.689 27 C -0.086 4.086 28 N -0.518 5.518 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.166 0.834 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.007 0.993 40 H 0.001 0.999 41 H 0.245 0.755 42 H 0.027 0.973 43 H 0.032 0.968 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.157 0.843 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.531 -15.065 3.977 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.038 3.962 3 C -0.205 4.205 4 C -0.019 4.019 5 C 0.350 3.650 6 O -0.441 6.441 7 N -0.309 5.309 8 C -0.005 4.005 9 C -0.139 4.139 10 C -0.060 4.060 11 C -0.156 4.156 12 C 0.065 3.935 13 N -0.351 5.351 14 C -0.368 4.368 15 H 0.096 0.904 16 C -0.260 4.260 17 N -0.600 5.600 18 Si 0.804 3.196 19 H -0.215 1.215 20 H -0.221 1.221 21 H -0.194 1.194 22 C 0.016 3.984 23 C -0.147 4.147 24 C -0.044 4.044 25 N -0.217 5.217 26 C 0.045 3.955 27 C -0.144 4.144 28 N -0.234 5.234 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.184 0.816 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.025 0.975 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.173 0.827 48 H 0.121 0.879 49 H 0.116 0.884 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.112 -15.229 4.090 28.810 hybrid contribution 1.110 2.052 -0.459 2.378 sum -23.002 -13.177 3.631 26.756 Atomic orbital electron populations 1.20962 0.84410 1.05596 1.05245 1.22430 0.99549 0.86774 0.87488 1.22919 0.93835 1.02354 1.01423 1.21488 0.92677 0.91962 0.95763 1.18138 0.82211 0.87287 0.77403 1.90755 1.71297 1.29955 1.52106 1.48086 1.05565 1.11806 1.65398 1.21590 0.93284 0.87687 0.97988 1.21391 0.97655 0.97618 0.97248 1.20973 0.94234 0.95469 0.95353 1.22766 0.94979 0.99818 0.98058 1.20877 0.93777 0.94940 0.83941 1.44801 1.25941 1.57853 1.06475 1.19429 1.02345 1.22247 0.92775 0.90360 1.25613 1.00500 1.02613 0.97299 1.70195 1.29536 1.49488 1.10768 0.85115 0.77888 0.78475 0.78092 1.21460 1.22079 1.19449 1.21684 0.86665 0.95016 0.95021 1.21729 0.97329 0.97537 0.98077 1.23200 0.99307 0.85564 0.96318 1.68151 1.39482 0.98300 1.15747 1.24117 0.86910 0.95555 0.88938 1.20783 1.00367 0.87879 1.05416 1.68202 1.09898 1.30800 1.14526 0.87853 0.88911 0.88089 0.81622 0.89795 0.90279 0.92495 0.92310 0.90683 0.90665 0.97480 0.98040 0.94536 0.95572 0.94935 0.88988 0.92000 0.90635 0.82725 0.87854 0.88398 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.22 71.24 0.73 -0.04 16 2 C 0.19 2.86 6.83 42.64 0.29 3.15 16 3 C -0.18 -3.42 9.40 22.71 0.21 -3.21 16 4 C 0.13 2.91 6.61 41.98 0.28 3.18 16 5 C 0.56 15.75 7.67 86.97 0.67 16.42 16 6 O -0.56 -18.59 15.88 -3.67 -0.06 -18.65 16 7 N -0.58 -15.56 2.97 -821.93 -2.44 -17.99 16 8 C 0.12 3.43 6.11 86.25 0.53 3.96 16 9 C -0.10 -3.37 4.83 30.25 0.15 -3.22 16 10 C -0.06 -1.94 0.55 -51.92 -0.03 -1.97 16 11 C -0.12 -4.19 4.92 31.56 0.16 -4.04 16 12 C 0.19 9.41 5.00 86.76 0.43 9.84 16 13 N -0.62 -32.37 3.39 -692.77 -2.35 -34.72 16 14 C -0.24 -13.64 10.28 84.03 0.86 -12.78 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 17 N -0.95 -58.19 10.31 21.65 0.22 -57.96 16 18 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 C 0.14 5.76 6.15 86.56 0.53 6.29 16 23 C -0.11 -2.71 4.84 30.42 0.15 -2.56 16 24 C 0.08 1.77 5.67 86.42 0.49 2.26 16 25 N -0.50 -10.10 6.19 -177.08 -1.10 -11.20 16 26 C 0.31 5.34 7.64 138.78 1.06 6.40 16 27 C -0.09 -0.85 10.31 71.24 0.73 -0.12 16 28 N -0.52 -9.00 10.25 -176.05 -1.81 -10.81 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.44 8.10 -2.39 -0.02 0.42 16 32 H 0.17 2.79 7.76 -2.91 -0.02 2.76 16 33 H 0.08 2.58 6.99 -2.38 -0.02 2.57 16 34 H 0.08 2.26 6.56 -2.39 -0.02 2.25 16 35 H 0.06 2.27 7.82 -2.38 -0.02 2.25 16 36 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.07 2.44 6.19 -2.39 -0.01 2.42 16 38 H 0.07 2.42 7.98 -2.39 -0.02 2.40 16 39 H 0.01 0.39 7.39 -2.38 -0.02 0.37 16 40 H 0.00 0.08 7.50 -2.39 -0.02 0.06 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.03 1.04 7.99 -2.39 -0.02 1.02 16 43 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 44 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.66 7.62 -2.39 -0.02 1.65 16 47 H 0.16 3.23 3.97 -64.43 -0.26 2.98 16 48 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.69 387.48 2.91 -70.78 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.70 Total: 11.63 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 7.70 Total: 20.13 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -7.46 Total: -132.67 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.06 Total: -18.65 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.69 2.91 -70.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035238015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.748 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds