Wall clock time and date at job start Wed Apr 1 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31885 * 118.95334 * 2 1 4 4 C 1.32133 * 120.96915 * 179.72382 * 3 2 1 5 5 C 1.39977 * 118.91923 * 0.57287 * 4 3 2 6 6 C 1.47826 * 120.94043 * 179.71708 * 5 4 3 7 7 O 1.21554 * 119.99991 * 125.16156 * 6 5 4 8 8 N 1.34778 * 119.99696 * 305.16681 * 6 5 4 9 9 C 1.46941 * 120.54805 * 183.73075 * 8 6 5 10 10 C 1.53348 * 108.68345 * 125.62677 * 9 8 6 11 11 C 1.52106 * 109.43966 * 53.30269 * 10 9 8 12 12 C 1.54386 * 110.51161 * 64.09222 * 11 10 9 13 13 C 1.54455 * 102.86983 * 83.32800 * 12 11 10 14 14 N 1.47085 * 107.30033 * 21.50860 * 13 12 11 15 15 C 1.36935 * 125.62854 * 180.96550 * 14 13 12 16 16 H 1.08006 * 119.99637 * 179.70319 * 15 14 13 17 17 C 1.38804 * 120.00239 * 359.70768 * 15 14 13 18 18 N 1.31615 * 120.00307 * 160.51265 * 17 15 14 19 19 Si 1.86804 * 119.99987 * 340.51279 * 17 15 14 20 20 H 1.48503 * 109.47196 * 186.04651 * 19 17 15 21 21 H 1.48499 * 109.47331 * 306.04950 * 19 17 15 22 22 H 1.48504 * 109.47034 * 66.05035 * 19 17 15 23 23 C 1.47576 * 108.73813 * 1.22926 * 14 13 12 24 24 C 1.52108 * 111.60515 * 300.69149 * 11 10 9 25 25 C 1.46929 * 120.55521 * 3.70560 * 8 6 5 26 26 C 1.39932 * 118.11934 * 359.44548 * 5 4 3 27 27 C 1.50698 * 120.53742 * 180.25387 * 26 5 4 28 28 N 1.31854 * 118.95313 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47082 * 269.98255 * 1 2 3 30 30 H 1.09003 * 109.47084 * 29.97324 * 1 2 3 31 31 H 1.08999 * 109.47521 * 149.97981 * 1 2 3 32 32 H 1.08000 * 120.54283 * 180.31146 * 4 3 2 33 33 H 1.08996 * 109.60235 * 5.86931 * 9 8 6 34 34 H 1.08999 * 109.60418 * 245.37935 * 9 8 6 35 35 H 1.09004 * 109.47680 * 293.31449 * 10 9 8 36 36 H 1.08997 * 109.47771 * 173.29691 * 10 9 8 37 37 H 1.08994 * 110.73174 * 324.98465 * 12 11 10 38 38 H 1.08995 * 110.73602 * 201.67467 * 12 11 10 39 39 H 1.09006 * 109.88016 * 262.08297 * 13 12 11 40 40 H 1.09006 * 109.88010 * 140.93162 * 13 12 11 41 41 H 0.97005 * 119.99820 * 5.01064 * 18 17 15 42 42 H 1.08997 * 110.37414 * 95.26266 * 23 14 13 43 43 H 1.08996 * 110.37465 * 217.61178 * 23 14 13 44 44 H 1.08991 * 109.47895 * 179.29709 * 24 11 10 45 45 H 1.09007 * 109.47417 * 299.31639 * 24 11 10 46 46 H 1.08993 * 109.60052 * 354.13516 * 25 8 6 47 47 H 1.09005 * 109.59653 * 114.61264 * 25 8 6 48 48 H 1.09001 * 109.46850 * 94.79747 * 27 26 5 49 49 H 1.08997 * 109.47221 * 214.79501 * 27 26 5 50 50 H 1.08996 * 109.47059 * 334.80089 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0055 5 6 4.1856 -0.0001 -0.0010 6 6 5.6638 -0.0002 -0.0015 7 8 6.2719 -0.6109 0.8558 8 7 6.3373 0.6769 -0.9525 9 6 7.8043 0.6187 -1.0134 10 6 8.2203 0.1753 -2.4212 11 6 7.5625 1.0799 -3.4520 12 6 8.0738 2.5292 -3.3046 13 6 9.3966 2.5100 -4.1017 14 7 9.3279 1.3763 -5.0362 15 6 10.3127 1.0030 -5.9113 16 1 10.1671 0.1486 -6.5557 17 6 11.4982 1.7226 -5.9701 18 7 12.5734 1.1776 -6.4987 19 14 11.5678 3.4645 -5.2989 20 1 12.8910 4.0625 -5.6103 21 1 10.4964 4.2796 -5.9256 22 1 11.3715 3.4361 -3.8272 23 6 8.0197 0.7114 -4.8794 24 6 6.0456 1.0368 -3.3482 25 6 5.6169 1.4851 -1.9459 26 6 3.4660 -1.2003 -0.0010 27 6 4.1856 -2.5244 -0.0020 28 7 2.1453 -1.1537 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 3.9817 2.1494 0.0105 33 1 8.1726 -0.0988 -0.2803 34 1 8.2185 1.6049 -0.8035 35 1 7.9033 -0.8545 -2.5864 36 1 9.3039 0.2419 -2.5179 37 1 8.2577 2.7688 -2.2574 38 1 7.3683 3.2339 -3.7446 39 1 10.2378 2.3787 -3.4209 40 1 9.5085 3.4415 -4.6567 41 1 12.5198 0.3019 -6.9124 42 1 7.3114 1.0889 -5.6168 43 1 8.1292 -0.3688 -4.9753 44 1 5.6113 1.7048 -4.0919 45 1 5.6979 0.0192 -3.5265 46 1 4.5434 1.3386 -1.8273 47 1 5.8622 2.5381 -1.8077 48 1 4.2841 -2.8851 1.0219 49 1 3.6172 -3.2463 -0.5883 50 1 5.1757 -2.3995 -0.4401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035238087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:37 Heat of formation + Delta-G solvation = 50.676462 kcal Electronic energy + Delta-G solvation = -31233.258275 eV Core-core repulsion = 27261.639132 eV Total energy + Delta-G solvation = -3971.619143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.84535 -40.41519 -38.86335 -36.22331 -34.89191 -34.10795 -33.14358 -31.40242 -31.29854 -29.65002 -29.12864 -28.89121 -27.19588 -24.60561 -23.77219 -23.62341 -22.96216 -22.54027 -20.72976 -20.20008 -18.53562 -18.40535 -17.62510 -16.98619 -16.50965 -16.34902 -15.77278 -15.42912 -15.36399 -15.03752 -14.33229 -14.15686 -13.97879 -13.75905 -13.66252 -13.49112 -13.40454 -13.24998 -13.04258 -12.88444 -12.80996 -12.60870 -12.55512 -12.35573 -12.00071 -11.83415 -11.55679 -11.32403 -11.23029 -10.99251 -10.95377 -10.49124 -10.42783 -10.31131 -10.13409 -9.84736 -9.71541 -9.65638 -9.47442 -8.96502 -8.80854 -8.61668 -7.03617 -6.31816 -3.17855 0.16529 0.59509 2.28112 2.66868 3.22834 3.37516 3.41910 3.47107 3.58958 3.68313 3.92836 4.05348 4.52592 4.55903 4.59732 4.67104 4.67857 4.83584 4.92562 4.96708 5.05773 5.09327 5.13332 5.16144 5.20864 5.24208 5.32766 5.37902 5.45543 5.47635 5.56975 5.60721 5.65447 5.70204 5.74953 5.84519 5.89511 5.94816 5.98249 6.15125 6.25607 6.28353 6.39498 6.44815 6.48754 6.59988 6.71729 6.76802 7.09177 7.61127 7.65362 7.80760 8.32800 9.05308 9.58296 10.24537 11.19514 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002645 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.401485 B =10585.063482 C =10812.763850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.334 3.666 3 N -0.523 5.523 4 C 0.187 3.813 5 C -0.241 4.241 6 C 0.571 3.429 7 O -0.528 6.528 8 N -0.597 5.597 9 C 0.111 3.889 10 C -0.112 4.112 11 C -0.072 4.072 12 C -0.122 4.122 13 C 0.102 3.898 14 N -0.611 5.611 15 C -0.324 4.324 16 H 0.077 0.923 17 C -0.026 4.026 18 N -0.928 5.928 19 Si 1.073 2.927 20 H -0.303 1.303 21 H -0.300 1.300 22 H -0.282 1.282 23 C 0.149 3.851 24 C -0.116 4.116 25 C 0.102 3.898 26 C 0.229 3.771 27 C -0.109 4.109 28 N -0.520 5.520 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.021 0.979 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.972 -0.914 14.329 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 N -0.238 5.238 4 C 0.020 3.980 5 C -0.249 4.249 6 C 0.357 3.643 7 O -0.405 6.405 8 N -0.329 5.329 9 C -0.010 4.010 10 C -0.150 4.150 11 C -0.073 4.073 12 C -0.160 4.160 13 C -0.023 4.023 14 N -0.339 5.339 15 C -0.451 4.451 16 H 0.095 0.905 17 C -0.225 4.225 18 N -0.570 5.570 19 Si 0.907 3.093 20 H -0.231 1.231 21 H -0.229 1.229 22 H -0.209 1.209 23 C 0.023 3.977 24 C -0.155 4.155 25 C -0.021 4.021 26 C 0.082 3.918 27 C -0.166 4.166 28 N -0.235 5.235 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.191 0.809 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.533 -0.015 14.982 27.059 hybrid contribution -0.176 -1.055 -0.585 1.219 sum -22.709 -1.070 14.397 26.910 Atomic orbital electron populations 1.20637 0.85243 1.04541 1.04174 1.23489 0.98463 0.83256 0.88009 1.68319 1.09436 1.30060 1.15971 1.23462 0.89522 0.97565 0.87479 1.21574 0.96197 0.96622 1.10476 1.17791 0.85774 0.79102 0.81635 1.90809 1.69091 1.43782 1.36838 1.48090 1.07822 1.47584 1.29419 1.21847 0.77664 1.02737 0.98741 1.21654 1.02276 0.98846 0.92197 1.21108 0.93275 0.95817 0.97101 1.22649 0.97707 0.95662 0.99951 1.22114 0.96143 0.91459 0.92538 1.44847 1.14294 1.31602 1.43168 1.20106 0.94827 1.12639 1.17515 0.90489 1.25735 0.90748 1.04779 1.01272 1.70922 1.26386 1.18994 1.40666 0.83853 0.73593 0.75857 0.75990 1.23117 1.22908 1.20893 1.21500 0.87835 0.96606 0.91742 1.21724 0.95995 1.02216 0.95533 1.22015 0.96251 0.95348 0.88488 1.21826 0.88944 0.95220 0.85817 1.20868 0.99781 0.91403 1.04526 1.68204 1.08970 1.30174 1.16169 0.89257 0.89247 0.89315 0.80887 0.88796 0.90737 0.91761 0.89169 0.91298 0.91556 0.93172 0.95249 0.92925 0.96089 0.93856 0.90280 0.91554 0.90364 0.90330 0.88708 0.89554 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.31 36.01 0.37 -0.16 16 2 C 0.33 3.25 7.64 -157.07 -1.20 2.05 16 3 N -0.52 -5.26 10.31 -10.39 -0.11 -5.36 16 4 C 0.19 1.76 8.76 -16.77 -0.15 1.62 16 5 C -0.24 -2.60 4.87 -104.69 -0.51 -3.11 16 6 C 0.57 6.92 6.20 -12.34 -0.08 6.84 16 7 O -0.53 -7.92 15.54 5.32 0.08 -7.84 16 8 N -0.60 -6.60 2.96 -173.69 -0.51 -7.11 16 9 C 0.11 1.35 6.12 -3.62 -0.02 1.32 16 10 C -0.11 -1.57 4.87 -27.01 -0.13 -1.70 16 11 C -0.07 -1.03 0.55 -153.98 -0.08 -1.11 16 12 C -0.12 -1.81 4.92 -25.24 -0.12 -1.94 16 13 C 0.10 2.10 4.24 -2.96 -0.01 2.09 16 14 N -0.61 -14.38 3.37 -170.17 -0.57 -14.95 16 15 C -0.32 -9.13 10.55 -15.06 -0.16 -9.29 16 16 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 17 C -0.03 -0.76 5.49 -17.44 -0.10 -0.86 16 18 N -0.93 -29.09 13.70 55.49 0.76 -28.33 16 19 Si 1.07 26.50 24.53 -169.99 -4.17 22.33 16 20 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 21 H -0.30 -7.16 6.70 56.52 0.38 -6.78 16 22 H -0.28 -6.27 5.22 56.52 0.30 -5.98 16 23 C 0.15 2.81 6.16 -2.74 -0.02 2.79 16 24 C -0.12 -1.28 4.84 -27.01 -0.13 -1.41 16 25 C 0.10 0.95 5.37 -3.63 -0.02 0.93 16 26 C 0.23 2.49 6.86 -81.82 -0.56 1.93 16 27 C -0.11 -1.02 9.56 36.00 0.34 -0.67 16 28 N -0.52 -5.61 10.25 -6.67 -0.07 -5.68 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.17 1.22 7.50 -52.49 -0.39 0.83 16 33 H 0.09 1.20 7.01 -51.93 -0.36 0.84 16 34 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.49 7.82 -51.93 -0.41 1.09 16 37 H 0.07 0.89 6.17 -51.93 -0.32 0.57 16 38 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 39 H 0.05 1.10 5.95 -51.93 -0.31 0.79 16 40 H 0.03 0.65 4.47 -51.93 -0.23 0.42 16 41 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 42 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 43 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 44 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 45 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 46 H 0.08 0.66 4.76 -51.93 -0.25 0.41 16 47 H 0.08 0.64 7.62 -51.93 -0.40 0.25 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.85 6.72 -51.93 -0.35 0.50 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -34.16 377.46 -9.16 -43.32 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.69 Total: -1.40 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.58 Total: -0.68 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.50 Total: -61.43 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.08 Total: -7.84 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -4.17 Total: 22.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.16 -9.16 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035238087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.998 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds