Wall clock time and date at job start Wed Apr 1 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31885 * 118.95334 * 2 1 4 4 C 1.32133 * 120.96915 * 179.72382 * 3 2 1 5 5 C 1.39977 * 118.91923 * 0.57287 * 4 3 2 6 6 C 1.47826 * 120.94043 * 179.71708 * 5 4 3 7 7 O 1.21554 * 119.99991 * 125.16156 * 6 5 4 8 8 N 1.34778 * 119.99696 * 305.16681 * 6 5 4 9 9 C 1.46941 * 120.54805 * 183.73075 * 8 6 5 10 10 C 1.53348 * 108.68345 * 125.62677 * 9 8 6 11 11 C 1.52106 * 109.43966 * 53.30269 * 10 9 8 12 12 C 1.54386 * 110.51161 * 64.09222 * 11 10 9 13 13 C 1.54455 * 102.86983 * 83.32800 * 12 11 10 14 14 N 1.47085 * 107.30033 * 21.50860 * 13 12 11 15 15 C 1.36935 * 125.62854 * 180.96550 * 14 13 12 16 16 H 1.08006 * 119.99637 * 179.70319 * 15 14 13 17 17 C 1.38804 * 120.00239 * 359.70768 * 15 14 13 18 18 N 1.31615 * 120.00307 * 160.51265 * 17 15 14 19 19 Si 1.86804 * 119.99987 * 340.51279 * 17 15 14 20 20 H 1.48503 * 109.47196 * 186.04651 * 19 17 15 21 21 H 1.48499 * 109.47331 * 306.04950 * 19 17 15 22 22 H 1.48504 * 109.47034 * 66.05035 * 19 17 15 23 23 C 1.47576 * 108.73813 * 1.22926 * 14 13 12 24 24 C 1.52108 * 111.60515 * 300.69149 * 11 10 9 25 25 C 1.46929 * 120.55521 * 3.70560 * 8 6 5 26 26 C 1.39932 * 118.11934 * 359.44548 * 5 4 3 27 27 C 1.50698 * 120.53742 * 180.25387 * 26 5 4 28 28 N 1.31854 * 118.95313 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47082 * 269.98255 * 1 2 3 30 30 H 1.09003 * 109.47084 * 29.97324 * 1 2 3 31 31 H 1.08999 * 109.47521 * 149.97981 * 1 2 3 32 32 H 1.08000 * 120.54283 * 180.31146 * 4 3 2 33 33 H 1.08996 * 109.60235 * 5.86931 * 9 8 6 34 34 H 1.08999 * 109.60418 * 245.37935 * 9 8 6 35 35 H 1.09004 * 109.47680 * 293.31449 * 10 9 8 36 36 H 1.08997 * 109.47771 * 173.29691 * 10 9 8 37 37 H 1.08994 * 110.73174 * 324.98465 * 12 11 10 38 38 H 1.08995 * 110.73602 * 201.67467 * 12 11 10 39 39 H 1.09006 * 109.88016 * 262.08297 * 13 12 11 40 40 H 1.09006 * 109.88010 * 140.93162 * 13 12 11 41 41 H 0.97005 * 119.99820 * 5.01064 * 18 17 15 42 42 H 1.08997 * 110.37414 * 95.26266 * 23 14 13 43 43 H 1.08996 * 110.37465 * 217.61178 * 23 14 13 44 44 H 1.08991 * 109.47895 * 179.29709 * 24 11 10 45 45 H 1.09007 * 109.47417 * 299.31639 * 24 11 10 46 46 H 1.08993 * 109.60052 * 354.13516 * 25 8 6 47 47 H 1.09005 * 109.59653 * 114.61264 * 25 8 6 48 48 H 1.09001 * 109.46850 * 94.79747 * 27 26 5 49 49 H 1.08997 * 109.47221 * 214.79501 * 27 26 5 50 50 H 1.08996 * 109.47059 * 334.80089 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2005 0.0055 5 6 4.1856 -0.0001 -0.0010 6 6 5.6638 -0.0002 -0.0015 7 8 6.2719 -0.6109 0.8558 8 7 6.3373 0.6769 -0.9525 9 6 7.8043 0.6187 -1.0134 10 6 8.2203 0.1753 -2.4212 11 6 7.5625 1.0799 -3.4520 12 6 8.0738 2.5292 -3.3046 13 6 9.3966 2.5100 -4.1017 14 7 9.3279 1.3763 -5.0362 15 6 10.3127 1.0030 -5.9113 16 1 10.1671 0.1486 -6.5557 17 6 11.4982 1.7226 -5.9701 18 7 12.5734 1.1776 -6.4987 19 14 11.5678 3.4645 -5.2989 20 1 12.8910 4.0625 -5.6103 21 1 10.4964 4.2796 -5.9256 22 1 11.3715 3.4361 -3.8272 23 6 8.0197 0.7114 -4.8794 24 6 6.0456 1.0368 -3.3482 25 6 5.6169 1.4851 -1.9459 26 6 3.4660 -1.2003 -0.0010 27 6 4.1856 -2.5244 -0.0020 28 7 2.1453 -1.1537 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 3.9817 2.1494 0.0105 33 1 8.1726 -0.0988 -0.2803 34 1 8.2185 1.6049 -0.8035 35 1 7.9033 -0.8545 -2.5864 36 1 9.3039 0.2419 -2.5179 37 1 8.2577 2.7688 -2.2574 38 1 7.3683 3.2339 -3.7446 39 1 10.2378 2.3787 -3.4209 40 1 9.5085 3.4415 -4.6567 41 1 12.5198 0.3019 -6.9124 42 1 7.3114 1.0889 -5.6168 43 1 8.1292 -0.3688 -4.9753 44 1 5.6113 1.7048 -4.0919 45 1 5.6979 0.0192 -3.5265 46 1 4.5434 1.3386 -1.8273 47 1 5.8622 2.5381 -1.8077 48 1 4.2841 -2.8851 1.0219 49 1 3.6172 -3.2463 -0.5883 50 1 5.1757 -2.3995 -0.4401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035238087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:35 Heat of formation + Delta-G solvation = 27.477144 kcal Electronic energy + Delta-G solvation = -31234.264273 eV Core-core repulsion = 27261.639132 eV Total energy + Delta-G solvation = -3972.625141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.61664 -41.42786 -40.00927 -37.48209 -35.64140 -35.13963 -34.56495 -33.02005 -32.29066 -30.64836 -30.28202 -29.73626 -28.50291 -25.71081 -25.01613 -24.63192 -24.08821 -23.37060 -22.32252 -21.30476 -19.93180 -19.20783 -19.06918 -18.17809 -17.38824 -17.07428 -16.95105 -16.76477 -16.56185 -15.99679 -15.51055 -15.32496 -15.10731 -14.99180 -14.83640 -14.59869 -14.40169 -14.24222 -14.12899 -13.99567 -13.64766 -13.46370 -13.31271 -13.17207 -13.10338 -13.01194 -12.92843 -12.73170 -12.58501 -12.23277 -11.85794 -11.79102 -11.65190 -11.59577 -11.53944 -11.27212 -11.03218 -10.83015 -10.63548 -10.45665 -10.42131 -9.73606 -9.06195 -8.64306 -5.40760 -0.57128 -0.13283 1.38656 1.39955 1.51408 1.72233 1.80473 2.50075 2.55874 2.77699 2.92481 3.10794 3.22526 3.26546 3.35884 3.52254 3.68333 3.78441 3.80800 4.00143 4.04686 4.11089 4.22171 4.30069 4.31716 4.42740 4.50534 4.52528 4.55484 4.60419 4.67324 4.71277 4.72283 4.75935 4.79152 4.84074 4.88491 4.88758 5.00297 5.03059 5.06282 5.08065 5.25394 5.32653 5.33856 5.38931 5.49205 5.57445 5.75832 6.10713 6.21697 6.85942 6.89424 6.91540 7.49705 8.13716 8.88691 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002645 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.401485 B =10585.063482 C =10812.763850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.326 3.674 3 N -0.531 5.531 4 C 0.194 3.806 5 C -0.254 4.254 6 C 0.576 3.424 7 O -0.563 6.563 8 N -0.593 5.593 9 C 0.121 3.879 10 C -0.107 4.107 11 C -0.058 4.058 12 C -0.109 4.109 13 C 0.091 3.909 14 N -0.632 5.632 15 C -0.311 4.311 16 H 0.041 0.959 17 C -0.088 4.088 18 N -0.966 5.966 19 Si 1.111 2.889 20 H -0.318 1.318 21 H -0.284 1.284 22 H -0.240 1.240 23 C 0.142 3.858 24 C -0.110 4.110 25 C 0.104 3.896 26 C 0.217 3.783 27 C -0.105 4.105 28 N -0.534 5.534 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.201 0.799 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.244 0.756 42 H 0.030 0.970 43 H 0.024 0.976 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.381 1.653 16.363 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 N -0.246 5.246 4 C 0.027 3.973 5 C -0.261 4.261 6 C 0.363 3.637 7 O -0.443 6.443 8 N -0.324 5.324 9 C -0.001 4.001 10 C -0.145 4.145 11 C -0.059 4.059 12 C -0.146 4.146 13 C -0.033 4.033 14 N -0.360 5.360 15 C -0.439 4.439 16 H 0.059 0.941 17 C -0.280 4.280 18 N -0.611 5.611 19 Si 0.938 3.062 20 H -0.247 1.247 21 H -0.211 1.211 22 H -0.165 1.165 23 C 0.017 3.983 24 C -0.148 4.148 25 C -0.017 4.017 26 C 0.071 3.929 27 C -0.162 4.162 28 N -0.250 5.250 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.218 0.782 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.124 0.876 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.022 2.541 17.028 31.202 hybrid contribution 0.799 -2.011 -1.294 2.521 sum -25.223 0.530 15.734 29.733 Atomic orbital electron populations 1.20778 0.82939 1.05489 1.05233 1.24193 0.99949 0.82972 0.86768 1.68439 1.09628 1.30033 1.16455 1.23886 0.89420 0.98009 0.85993 1.21471 0.95259 0.97277 1.12108 1.17937 0.86240 0.78332 0.81205 1.90794 1.69896 1.45207 1.38368 1.48099 1.07326 1.47476 1.29511 1.21674 0.78537 1.03257 0.96621 1.21541 1.00390 0.98680 0.93874 1.20993 0.95688 0.95597 0.93580 1.22685 0.94921 0.96092 1.00936 1.22275 0.99214 0.89781 0.92048 1.44916 1.15006 1.33319 1.42732 1.19993 0.96212 1.10826 1.16905 0.94141 1.27123 0.90542 1.08254 1.02034 1.71042 1.27957 1.18692 1.43386 0.83449 0.73222 0.71277 0.78221 1.24730 1.21144 1.16481 1.21722 0.86079 0.95224 0.95263 1.21684 0.92909 1.02775 0.97467 1.22186 0.96882 0.96266 0.86406 1.22035 0.89354 0.95745 0.85798 1.20839 0.99215 0.91499 1.04689 1.68275 1.08838 1.30854 1.17017 0.87969 0.88045 0.88594 0.78205 0.89876 0.88978 0.92670 0.92175 0.88250 0.88775 0.94523 0.95624 0.94678 0.95245 0.95768 0.88462 0.92000 0.88881 0.87551 0.88603 0.88437 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.31 71.24 0.73 -0.06 16 2 C 0.33 5.51 7.64 138.70 1.06 6.57 16 3 N -0.53 -8.94 10.31 -186.78 -1.93 -10.87 16 4 C 0.19 2.97 8.76 85.07 0.75 3.72 16 5 C -0.25 -4.87 4.87 -19.91 -0.10 -4.96 16 6 C 0.58 12.72 6.20 86.78 0.54 13.26 16 7 O -0.56 -16.35 15.54 -3.88 -0.06 -16.41 16 8 N -0.59 -11.19 2.96 -821.70 -2.43 -13.62 16 9 C 0.12 2.63 6.12 86.41 0.53 3.15 16 10 C -0.11 -2.87 4.87 30.42 0.15 -2.72 16 11 C -0.06 -1.49 0.55 -51.84 -0.03 -1.51 16 12 C -0.11 -2.74 4.92 31.56 0.16 -2.58 16 13 C 0.09 3.51 4.24 86.76 0.37 3.87 16 14 N -0.63 -29.62 3.37 -692.29 -2.33 -31.95 16 15 C -0.31 -18.13 10.55 84.03 0.89 -17.24 16 16 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 17 C -0.09 -5.27 5.49 84.86 0.47 -4.80 16 18 N -0.97 -63.24 13.70 21.65 0.30 -62.94 16 19 Si 1.11 53.27 24.53 68.60 1.68 54.95 16 20 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 21 H -0.28 -12.71 6.70 99.48 0.67 -12.05 16 22 H -0.24 -9.89 5.22 99.48 0.52 -9.37 16 23 C 0.14 5.24 6.16 86.63 0.53 5.77 16 24 C -0.11 -1.98 4.84 30.41 0.15 -1.83 16 25 C 0.10 1.43 5.37 86.41 0.46 1.89 16 26 C 0.22 4.40 6.86 42.92 0.29 4.70 16 27 C -0.11 -1.91 9.56 71.24 0.68 -1.23 16 28 N -0.53 -10.53 10.25 -175.03 -1.79 -12.32 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.20 1.83 7.50 -2.91 -0.02 1.81 16 33 H 0.08 2.04 7.01 -2.39 -0.02 2.02 16 34 H 0.09 1.72 6.55 -2.39 -0.02 1.70 16 35 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.99 7.82 -2.39 -0.02 1.97 16 37 H 0.10 1.97 6.17 -2.39 -0.01 1.95 16 38 H 0.09 1.94 7.98 -2.39 -0.02 1.92 16 39 H 0.04 1.52 5.95 -2.38 -0.01 1.50 16 40 H 0.03 1.05 4.47 -2.38 -0.01 1.04 16 41 H 0.24 16.13 8.73 -92.70 -0.81 15.32 16 42 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 43 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 44 H 0.10 1.50 8.09 -2.39 -0.02 1.48 16 45 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.09 1.09 4.76 -2.39 -0.01 1.08 16 47 H 0.11 0.99 7.62 -2.38 -0.02 0.97 16 48 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.07 1.46 6.72 -2.39 -0.02 1.45 16 Total: -1.00 -78.86 377.46 1.75 -77.11 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.69 Total: 10.07 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 7.62 Total: 5.98 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -8.19 Total: -131.71 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.06 Total: -16.41 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 1.68 Total: 54.95 kcal Total: -78.86 1.75 -77.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035238087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.590 kcal (2) G-P(sol) polarization free energy of solvation -78.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds