Wall clock time and date at job start Wed Apr 1 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32155 * 120.53992 * 2 1 4 4 C 1.31858 * 120.97032 * 180.02562 * 3 2 1 5 5 N 1.31888 * 122.09285 * 359.97399 * 4 3 2 6 6 C 1.32132 * 120.96691 * 359.74947 * 5 4 3 7 7 C 1.39929 * 120.53630 * 180.02562 * 2 1 3 8 8 C 1.47840 * 120.93789 * 359.97438 * 7 2 1 9 9 O 1.21552 * 120.00283 * 306.41376 * 8 7 2 10 10 N 1.34781 * 119.99883 * 126.41048 * 8 7 2 11 11 C 1.46925 * 120.62967 * 174.22403 * 10 8 7 12 12 C 1.53190 * 108.77363 * 126.37405 * 11 10 8 13 13 C 1.53041 * 109.31668 * 54.63325 * 12 11 10 14 14 C 1.52992 * 109.46175 * 178.61371 * 13 12 11 15 15 H 1.09003 * 110.88844 * 59.30168 * 14 13 12 16 16 C 1.55156 * 111.00597 * 183.17903 * 14 13 12 17 17 C 1.54324 * 102.94553 * 153.57894 * 16 14 13 18 18 N 1.47025 * 107.26636 * 337.80887 * 17 16 14 19 19 C 1.36939 * 125.64615 * 178.90277 * 18 17 16 20 20 H 1.07997 * 120.00014 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99818 * 0.02562 * 19 18 17 22 22 N 1.31620 * 120.00132 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47044 * 59.99866 * 23 21 19 25 25 H 1.48499 * 109.47000 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47153 * 300.00330 * 23 21 19 27 27 C 1.47464 * 108.72708 * 358.97416 * 18 17 16 28 28 C 1.53041 * 109.53696 * 298.63764 * 13 12 11 29 29 C 1.46932 * 120.62900 * 354.20442 * 10 8 7 30 30 H 1.09000 * 109.47202 * 274.86302 * 1 2 3 31 31 H 1.09006 * 109.47133 * 34.85667 * 1 2 3 32 32 H 1.09000 * 109.47501 * 154.86166 * 1 2 3 33 33 H 1.08000 * 118.95362 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.54104 * 180.26425 * 6 5 4 35 35 H 1.08999 * 109.58425 * 6.58092 * 11 10 8 36 36 H 1.08999 * 109.58187 * 246.15784 * 11 10 8 37 37 H 1.09006 * 109.49208 * 294.68108 * 12 11 10 38 38 H 1.08999 * 109.49765 * 174.58607 * 12 11 10 39 39 H 1.08998 * 109.45943 * 58.65258 * 13 12 11 40 40 H 1.09007 * 110.72005 * 271.94349 * 16 14 13 41 41 H 1.09004 * 110.71986 * 35.21331 * 16 14 13 42 42 H 1.08999 * 109.88218 * 97.22149 * 17 16 14 43 43 H 1.08999 * 109.88306 * 218.39713 * 17 16 14 44 44 H 0.96993 * 119.99672 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.35122 * 265.25600 * 27 18 17 46 46 H 1.08994 * 110.41011 * 142.91387 * 27 18 17 47 47 H 1.08998 * 109.50015 * 181.31460 * 28 13 12 48 48 H 1.09001 * 109.49824 * 301.41261 * 28 13 12 49 49 H 1.09002 * 109.58357 * 353.41565 * 29 10 8 50 50 H 1.08999 * 109.58138 * 113.84127 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4970 1.1481 -0.0005 5 7 4.2061 0.0361 -0.0005 6 6 3.6163 -1.1463 0.0049 7 6 2.2179 -1.2052 -0.0005 8 6 1.5119 -2.5041 -0.0006 9 8 0.6729 -2.7399 0.8468 10 7 1.7984 -3.4269 -0.9403 11 6 1.1996 -4.7672 -0.8804 12 6 0.5177 -5.0628 -2.2199 13 6 1.5278 -4.8758 -3.3543 14 6 0.8597 -5.2037 -4.6910 15 1 -0.0009 -4.5575 -4.8642 16 6 1.8750 -5.1026 -5.8599 17 6 1.2892 -6.0687 -6.9112 18 7 0.4180 -7.0140 -6.1976 19 6 -0.3087 -8.0210 -6.7747 20 1 -0.9216 -8.6646 -6.1611 21 6 -0.2576 -8.2146 -8.1483 22 7 0.4898 -7.4305 -8.8960 23 14 -1.2484 -9.5887 -8.9354 24 1 -2.6919 -9.3809 -8.6558 25 1 -1.0222 -9.5841 -10.4030 26 1 -0.8183 -10.8941 -8.3728 27 6 0.4548 -6.6974 -4.7578 28 6 2.0164 -3.4255 -3.3706 29 6 2.7153 -3.1113 -2.0442 30 1 -0.3633 0.0871 1.0240 31 1 -0.3634 0.8433 -0.5874 32 1 -0.3634 -0.9303 -0.4365 33 1 4.0127 2.0970 -0.0009 34 1 4.2037 -2.0525 0.0092 35 1 0.4616 -4.8022 -0.0790 36 1 1.9782 -5.5073 -0.6955 37 1 -0.3188 -4.3783 -2.3611 38 1 0.1527 -6.0898 -2.2235 39 1 2.3758 -5.5428 -3.1991 40 1 1.9139 -4.0855 -6.2501 41 1 2.8638 -5.4326 -5.5414 42 1 0.7079 -5.5101 -7.6447 43 1 2.0951 -6.6094 -7.4074 44 1 0.5252 -7.5656 -9.8559 45 1 1.1977 -7.3147 -4.2528 46 1 -0.5286 -6.8442 -4.3112 47 1 2.7180 -3.2872 -4.1932 48 1 1.1658 -2.7565 -3.5010 49 1 2.9773 -2.0538 -2.0106 50 1 3.6174 -3.7165 -1.9542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039119290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:58 Heat of formation + Delta-G solvation = 13.233882 kcal Electronic energy + Delta-G solvation = -30454.264353 eV Core-core repulsion = 26481.021578 eV Total energy + Delta-G solvation = -3973.242775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.49025 -40.98748 -39.70269 -37.99897 -35.59886 -35.23844 -34.12606 -33.26652 -32.10025 -30.91938 -29.92275 -29.14358 -27.08665 -26.36592 -24.90880 -24.45289 -23.83280 -22.33467 -21.72906 -20.90782 -20.40327 -19.07909 -18.81995 -18.39087 -17.85616 -17.30781 -16.79927 -16.37210 -16.24407 -15.81256 -15.68263 -15.29570 -15.15443 -14.92671 -14.61089 -14.39434 -14.18409 -14.10743 -14.02528 -13.82577 -13.79955 -13.46773 -13.31663 -13.24310 -12.89901 -12.74101 -12.70246 -12.32588 -12.25267 -12.15597 -12.03159 -11.80232 -11.68816 -11.62520 -11.32477 -11.18758 -11.04063 -10.99981 -10.69093 -10.57337 -10.42265 -9.71907 -8.87012 -7.84335 -5.19223 -0.53505 -0.11702 1.41957 1.44490 1.47806 1.54066 1.84478 2.49832 2.59083 2.92244 3.06749 3.24500 3.29433 3.33369 3.62762 3.70015 3.79638 3.82966 3.92809 4.09348 4.20020 4.27756 4.28610 4.35746 4.43025 4.44935 4.46648 4.54710 4.60388 4.68692 4.74156 4.79352 4.86063 4.90767 4.93937 4.99131 5.02829 5.04613 5.12652 5.20043 5.23892 5.28884 5.42603 5.46209 5.53005 5.61516 5.72971 5.75928 5.81295 6.22126 6.23610 6.90622 6.93378 7.12152 7.81093 8.45242 9.25863 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023734 B = 0.002160 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.445815 B =12960.101454 C =13366.583816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.213 3.787 3 N -0.536 5.536 4 C 0.313 3.687 5 N -0.533 5.533 6 C 0.192 3.808 7 C -0.246 4.246 8 C 0.574 3.426 9 O -0.563 6.563 10 N -0.596 5.596 11 C 0.116 3.884 12 C -0.124 4.124 13 C -0.063 4.063 14 C -0.079 4.079 15 H 0.061 0.939 16 C -0.121 4.121 17 C 0.182 3.818 18 N -0.632 5.632 19 C -0.242 4.242 20 H 0.081 0.919 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.137 3.863 28 C -0.124 4.124 29 C 0.107 3.893 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.232 0.768 34 H 0.197 0.803 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.003 0.997 43 H 0.002 0.998 44 H 0.246 0.754 45 H 0.027 0.973 46 H 0.035 0.965 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.032 15.929 19.859 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.067 3.933 3 N -0.251 5.251 4 C 0.027 3.973 5 N -0.247 5.247 6 C 0.025 3.975 7 C -0.254 4.254 8 C 0.361 3.639 9 O -0.443 6.443 10 N -0.327 5.327 11 C -0.006 4.006 12 C -0.162 4.162 13 C -0.082 4.082 14 C -0.098 4.098 15 H 0.080 0.920 16 C -0.159 4.159 17 C 0.057 3.943 18 N -0.358 5.358 19 C -0.371 4.371 20 H 0.099 0.901 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.012 3.988 28 C -0.162 4.162 29 C -0.015 4.015 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.248 0.752 34 H 0.213 0.787 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.109 0.891 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.026 16.585 20.095 27.263 hybrid contribution -1.146 -1.655 -1.090 2.290 sum 6.880 14.929 19.005 25.128 Atomic orbital electron populations 1.20849 0.86738 1.04114 1.04673 1.22053 0.98360 0.86990 0.85926 1.68431 1.11138 1.29410 1.16075 1.25881 0.86354 0.98410 0.86670 1.68588 1.41363 0.99195 1.15549 1.23833 0.89970 0.97605 0.86071 1.21535 0.97301 0.95357 1.11181 1.17964 0.81518 0.83180 0.81249 1.90792 1.34249 1.79603 1.39609 1.48147 1.46170 1.13063 1.25347 1.21707 0.98639 0.82167 0.98051 1.21915 0.98131 1.02508 0.93678 1.21004 0.97978 0.97095 0.92082 1.22216 0.97602 0.95276 0.94715 0.92029 1.22756 0.98540 0.99020 0.95586 1.20919 0.91520 0.89494 0.92371 1.44862 1.52780 1.35142 1.03034 1.19440 1.19881 1.06759 0.91056 0.90147 1.25665 1.01692 1.02027 0.96863 1.70197 1.44301 1.41444 1.04262 0.85167 0.78433 0.79004 0.76839 1.20344 1.22083 1.20216 1.21786 0.97939 0.94558 0.84496 1.21922 1.01067 0.95860 0.97378 1.22034 0.92601 1.02162 0.84673 0.88639 0.88492 0.90916 0.75160 0.78673 0.89902 0.89015 0.92592 0.90263 0.89718 0.90513 0.90585 0.97870 0.98008 0.94517 0.95511 0.94654 0.89133 0.92421 0.89699 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.55 71.23 0.68 -1.09 16 2 C 0.21 3.92 6.86 42.92 0.29 4.21 16 3 N -0.54 -9.36 10.36 -187.07 -1.94 -11.29 16 4 C 0.31 4.29 12.27 180.84 2.22 6.51 16 5 N -0.53 -7.92 10.42 -198.97 -2.07 -9.99 16 6 C 0.19 2.66 9.11 85.07 0.78 3.44 16 7 C -0.25 -4.29 4.62 -19.91 -0.09 -4.38 16 8 C 0.57 11.57 6.20 86.78 0.54 12.11 16 9 O -0.56 -15.16 15.47 -3.88 -0.06 -15.22 16 10 N -0.60 -9.84 2.97 -822.31 -2.44 -12.28 16 11 C 0.12 1.98 6.44 86.36 0.56 2.53 16 12 C -0.12 -2.44 5.21 30.67 0.16 -2.28 16 13 C -0.06 -1.28 1.65 -10.77 -0.02 -1.29 16 14 C -0.08 -2.37 2.56 -9.40 -0.02 -2.39 16 15 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.12 -4.05 5.42 31.78 0.17 -3.87 16 17 C 0.18 8.96 5.37 86.73 0.47 9.43 16 18 N -0.63 -32.53 3.40 -691.89 -2.35 -34.88 16 19 C -0.24 -13.75 10.28 84.03 0.86 -12.88 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 22 N -0.95 -58.23 10.31 21.65 0.22 -58.00 16 23 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 C 0.14 5.30 5.80 86.85 0.50 5.80 16 28 C -0.12 -2.02 5.20 30.67 0.16 -1.87 16 29 C 0.11 1.34 5.63 86.36 0.49 1.82 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.07 1.35 6.69 -2.39 -0.02 1.34 16 33 H 0.23 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.20 1.64 7.81 -2.91 -0.02 1.61 16 35 H 0.08 1.65 7.00 -2.39 -0.02 1.63 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 1.63 7.32 -2.39 -0.02 1.61 16 39 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.08 2.28 8.09 -2.38 -0.02 2.26 16 41 H 0.08 2.26 8.04 -2.39 -0.02 2.24 16 42 H 0.00 0.17 7.38 -2.39 -0.02 0.15 16 43 H 0.00 0.09 7.51 -2.39 -0.02 0.08 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 45 H 0.03 1.00 8.03 -2.39 -0.02 0.98 16 46 H 0.04 1.36 8.02 -2.39 -0.02 1.34 16 47 H 0.09 1.38 7.32 -2.39 -0.02 1.36 16 48 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 0.98 5.39 -2.39 -0.01 0.97 16 50 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.90 389.40 2.52 -72.38 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.93 Total: 8.81 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 8.21 Total: 12.22 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -8.58 Total: -126.45 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.06 Total: -15.22 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -74.90 2.52 -72.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039119290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.610 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds