Wall clock time and date at job start Wed Apr 1 2020 03:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38833 * 120.41636 * 2 1 4 4 C 1.38774 * 118.50336 * 180.02562 * 3 2 1 5 5 N 1.32126 * 119.17071 * 0.02562 * 4 3 2 6 6 C 1.32448 * 120.76654 * 0.02562 * 5 4 3 7 7 C 1.48531 * 119.18279 * 180.02562 * 6 5 4 8 8 O 1.21475 * 119.99909 * 135.40125 * 7 6 5 9 9 N 1.34774 * 120.00433 * 315.11802 * 7 6 5 10 10 C 1.46936 * 120.62559 * 4.15418 * 9 7 6 11 11 C 1.52755 * 109.00742 * 233.58241 * 10 9 7 12 12 C 1.53041 * 109.38624 * 305.58816 * 11 10 9 13 13 C 1.53001 * 109.44947 * 181.25239 * 12 11 10 14 14 H 1.08991 * 110.64189 * 299.23654 * 13 12 11 15 15 C 1.55158 * 110.72035 * 62.38542 * 13 12 11 16 16 C 1.55119 * 101.48758 * 153.73232 * 15 13 12 17 17 N 1.47424 * 104.94098 * 323.21801 * 16 15 13 18 18 C 1.36938 * 125.64679 * 203.96805 * 17 16 15 19 19 H 1.08001 * 119.99915 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00131 * 0.04490 * 18 17 16 21 21 N 1.31619 * 119.99904 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47188 * 59.99564 * 22 20 18 24 24 H 1.48499 * 109.46920 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47054 * 299.99647 * 22 20 18 26 26 C 1.47022 * 108.70573 * 24.00599 * 17 16 15 27 27 C 1.53049 * 109.53675 * 61.24114 * 12 11 10 28 28 C 1.46923 * 120.63655 * 184.43170 * 9 7 6 29 29 N 1.32097 * 120.42364 * 180.29104 * 2 1 3 30 30 H 1.08999 * 109.46632 * 90.00115 * 1 2 3 31 31 H 1.08999 * 109.47099 * 209.99886 * 1 2 3 32 32 H 1.08998 * 109.47406 * 330.00179 * 1 2 3 33 33 H 1.07999 * 120.74283 * 0.02562 * 3 2 1 34 34 H 1.08009 * 120.41506 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.58302 * 353.41893 * 10 9 7 36 36 H 1.08993 * 109.58536 * 113.84249 * 10 9 7 37 37 H 1.09001 * 109.56460 * 185.55505 * 11 10 9 38 38 H 1.09001 * 109.35955 * 65.49973 * 11 10 9 39 39 H 1.09005 * 109.46189 * 301.22399 * 12 11 10 40 40 H 1.08999 * 110.99915 * 271.93805 * 15 13 12 41 41 H 1.08999 * 110.99942 * 35.78290 * 15 13 12 42 42 H 1.08998 * 110.41904 * 204.29325 * 16 15 13 43 43 H 1.08997 * 110.30251 * 82.08813 * 16 15 13 44 44 H 0.97003 * 120.00006 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.88172 * 239.52131 * 26 17 16 46 46 H 1.09002 * 109.88453 * 118.35567 * 26 17 16 47 47 H 1.08995 * 109.49548 * 178.68353 * 27 12 11 48 48 H 1.08998 * 109.49394 * 58.58644 * 27 12 11 49 49 H 1.08996 * 109.58957 * 246.15660 * 28 9 7 50 50 H 1.08998 * 109.58307 * 6.44674 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1509 -0.0005 5 7 4.2020 -0.0236 -0.0016 6 6 3.5006 -1.1471 -0.0026 7 6 4.2171 -2.4482 -0.0031 8 8 3.8536 -3.3420 0.7348 9 7 5.2669 -2.6391 -0.8264 10 6 5.7714 -1.5415 -1.6630 11 6 5.8189 -2.0060 -3.1175 12 6 6.6367 -3.2961 -3.2123 13 6 6.7115 -3.7456 -4.6729 14 1 5.7142 -3.9435 -5.0655 15 6 7.4413 -2.6838 -5.5374 16 6 8.0029 -3.5569 -6.6900 17 7 8.3924 -4.8266 -6.0500 18 6 9.3263 -5.7072 -6.5271 19 1 9.5409 -6.6145 -5.9821 20 6 9.9975 -5.4334 -7.7108 21 7 9.7359 -4.3276 -8.3751 22 14 11.2710 -6.6350 -8.3619 23 1 10.6289 -7.9509 -8.6096 24 1 11.8386 -6.1148 -9.6317 25 1 12.3574 -6.7947 -7.3623 26 6 7.6115 -4.9913 -4.8153 27 6 5.9672 -4.3891 -2.3761 28 6 5.9250 -3.9502 -0.9090 29 7 2.1759 -1.1391 -0.0058 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6889 2.1433 0.0004 34 1 4.1745 2.0636 -0.0001 35 1 5.1072 -0.6816 -1.5769 36 1 6.7743 -1.2653 -1.3376 37 1 6.2835 -1.2348 -3.7319 38 1 4.8046 -2.1914 -3.4709 39 1 7.6437 -3.1163 -2.8356 40 1 6.7410 -1.9382 -5.9138 41 1 8.2485 -2.2118 -4.9773 42 1 8.8715 -3.0776 -7.1416 43 1 7.2333 -3.7315 -7.4418 44 1 10.2046 -4.1365 -9.2026 45 1 8.2823 -5.0638 -3.9593 46 1 6.9954 -5.8879 -4.8831 47 1 6.5373 -5.3140 -2.4628 48 1 4.9515 -4.5521 -2.7365 49 1 6.9407 -3.8744 -0.5209 50 1 5.3634 -4.6783 -0.3236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039122429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:07 Heat of formation + Delta-G solvation = 43.316159 kcal Electronic energy + Delta-G solvation = -30204.901868 eV Core-core repulsion = 26232.963558 eV Total energy + Delta-G solvation = -3971.938310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.78843 -40.03814 -38.38619 -36.64123 -35.07821 -33.72163 -33.12678 -31.75904 -31.26886 -29.21210 -29.06700 -27.84464 -26.09371 -25.03436 -23.76322 -23.35064 -23.17764 -21.27922 -19.98919 -19.66672 -19.31772 -18.18344 -17.74167 -16.81334 -16.69032 -16.22819 -15.74098 -15.11083 -15.06040 -14.91385 -14.43790 -14.24222 -14.13989 -13.82214 -13.69138 -13.63622 -13.40375 -13.01998 -12.93530 -12.84096 -12.36859 -12.27889 -11.72702 -11.66130 -11.55500 -11.29853 -11.22877 -11.06828 -10.95065 -10.86426 -10.75297 -10.46530 -10.27260 -10.10262 -10.01516 -9.85370 -9.80905 -9.68807 -9.62653 -9.40572 -8.78237 -8.60321 -6.77729 -5.61171 -3.02396 0.11996 0.56317 2.21504 2.44765 3.21726 3.42561 3.46514 3.47920 3.57705 3.69179 3.95102 4.34040 4.50573 4.52238 4.63116 4.77632 4.85767 4.88170 4.91947 5.02565 5.06574 5.23574 5.25947 5.35032 5.43273 5.47715 5.51538 5.63231 5.65129 5.73134 5.74717 5.82848 5.87863 5.96331 6.03355 6.03654 6.16657 6.21310 6.41846 6.43145 6.46107 6.49734 6.65799 6.69931 6.84416 7.05394 7.08801 7.45887 7.57269 7.67115 7.83504 7.90579 8.41449 9.26879 9.88234 10.54035 11.42576 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002105 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.302580 B =13301.134507 C =13825.223178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.174 3.826 3 C -0.214 4.214 4 C 0.147 3.853 5 N -0.494 5.494 6 C 0.300 3.700 7 C 0.592 3.408 8 O -0.516 6.516 9 N -0.587 5.587 10 C 0.103 3.897 11 C -0.131 4.131 12 C -0.074 4.074 13 C -0.093 4.093 14 H 0.067 0.933 15 C -0.138 4.138 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.924 5.924 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.142 3.858 27 C -0.130 4.130 28 C 0.113 3.887 29 N -0.479 5.479 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.008 0.992 44 H 0.251 0.749 45 H 0.023 0.977 46 H 0.017 0.983 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.186 14.993 17.341 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.028 3.972 3 C -0.236 4.236 4 C -0.019 4.019 5 N -0.212 5.212 6 C 0.029 3.971 7 C 0.375 3.625 8 O -0.389 6.389 9 N -0.320 5.320 10 C -0.019 4.019 11 C -0.169 4.169 12 C -0.093 4.093 13 C -0.112 4.112 14 H 0.085 0.915 15 C -0.177 4.177 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.209 4.209 21 N -0.573 5.573 22 Si 0.745 3.255 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.016 3.984 27 C -0.168 4.168 28 C -0.008 4.008 29 N -0.195 5.195 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.171 0.829 34 H 0.195 0.805 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.026 0.974 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.035 0.965 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.747 13.564 17.557 27.207 hybrid contribution 0.175 0.350 -0.484 0.623 sum -15.572 13.913 17.073 26.973 Atomic orbital electron populations 1.20837 0.87146 1.04459 1.04112 1.21888 0.97993 0.87750 0.89568 1.23002 0.96644 1.00717 1.03243 1.23379 0.92292 0.96105 0.90086 1.68511 1.41013 0.98665 1.12990 1.22833 0.87408 0.93129 0.93710 1.17249 0.79673 0.84478 0.81148 1.90800 1.65784 1.42089 1.40201 1.47934 1.30343 1.13136 1.40553 1.22030 1.00810 0.89042 0.90044 1.21952 1.00965 0.98660 0.95301 1.21151 0.98979 0.93688 0.95475 1.22170 0.98867 0.96941 0.93269 0.91498 1.23068 0.98564 0.97055 0.98980 1.21940 0.99228 0.85387 0.90766 1.44515 1.44052 1.21881 1.22687 1.19041 1.12004 0.99753 1.04079 0.90630 1.24785 1.00460 0.98027 0.97594 1.69802 1.44943 1.24882 1.17624 0.86159 0.81235 0.80099 0.78057 1.21272 1.21613 1.21186 1.21315 0.92370 0.94410 0.90276 1.22020 1.01851 0.99499 0.93431 1.21779 0.97722 0.83333 0.97999 1.68110 1.08395 1.30769 1.12226 0.89247 0.89533 0.89753 0.82860 0.80516 0.88759 0.90575 0.90072 0.91989 0.90709 0.92730 0.92253 0.87810 0.97377 0.93782 0.95949 0.96508 0.89782 0.91562 0.90762 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.22 36.01 0.37 -0.15 16 2 C 0.17 1.43 6.82 -82.26 -0.56 0.87 16 3 C -0.21 -1.22 9.87 -39.16 -0.39 -1.61 16 4 C 0.15 0.98 11.30 -17.23 -0.19 0.78 16 5 N -0.49 -5.10 7.62 -11.12 -0.08 -5.19 16 6 C 0.30 3.81 6.68 -157.08 -1.05 2.76 16 7 C 0.59 8.57 7.57 -12.02 -0.09 8.48 16 8 O -0.52 -8.94 16.52 5.39 0.09 -8.85 16 9 N -0.59 -7.39 2.98 -173.89 -0.52 -7.91 16 10 C 0.10 1.12 6.01 -3.93 -0.02 1.10 16 11 C -0.13 -1.52 5.17 -26.84 -0.14 -1.66 16 12 C -0.07 -0.99 1.53 -90.57 -0.14 -1.13 16 13 C -0.09 -1.58 2.48 -88.78 -0.22 -1.80 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.14 -2.55 5.50 -24.47 -0.13 -2.69 16 16 C 0.15 3.72 5.89 -2.42 -0.01 3.70 16 17 N -0.61 -15.74 3.40 -169.94 -0.58 -16.32 16 18 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 21 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.14 2.96 5.89 -3.06 -0.02 2.95 16 27 C -0.13 -1.63 5.20 -26.60 -0.14 -1.77 16 28 C 0.11 1.36 6.42 -3.71 -0.02 1.33 16 29 N -0.48 -5.87 10.28 -7.37 -0.08 -5.95 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.19 8.10 -51.93 -0.42 -0.23 16 33 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 34 H 0.18 0.52 8.06 -52.48 -0.42 0.09 16 35 H 0.09 1.00 4.75 -51.93 -0.25 0.75 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.91 7.27 -51.93 -0.38 0.53 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 40 H 0.05 0.89 8.08 -51.93 -0.42 0.48 16 41 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 42 H 0.10 2.86 5.87 -51.93 -0.31 2.55 16 43 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 1.06 7.27 -51.93 -0.38 0.68 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 1.17 7.03 -51.93 -0.36 0.81 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -35.01 391.83 -10.69 -45.70 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.95 Total: -2.30 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -3.02 Total: 4.29 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.70 Total: -62.04 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.01 -10.69 -45.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039122429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.013 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds