Wall clock time and date at job start Wed Apr 1 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38833 * 120.41636 * 2 1 4 4 C 1.38774 * 118.50336 * 180.02562 * 3 2 1 5 5 N 1.32126 * 119.17071 * 0.02562 * 4 3 2 6 6 C 1.32448 * 120.76654 * 0.02562 * 5 4 3 7 7 C 1.48531 * 119.18279 * 180.02562 * 6 5 4 8 8 O 1.21475 * 119.99909 * 135.40125 * 7 6 5 9 9 N 1.34774 * 120.00433 * 315.11802 * 7 6 5 10 10 C 1.46936 * 120.62559 * 4.15418 * 9 7 6 11 11 C 1.52755 * 109.00742 * 233.58241 * 10 9 7 12 12 C 1.53041 * 109.38624 * 305.58816 * 11 10 9 13 13 C 1.53001 * 109.44947 * 181.25239 * 12 11 10 14 14 H 1.08991 * 110.64189 * 299.23654 * 13 12 11 15 15 C 1.55158 * 110.72035 * 62.38542 * 13 12 11 16 16 C 1.55119 * 101.48758 * 153.73232 * 15 13 12 17 17 N 1.47424 * 104.94098 * 323.21801 * 16 15 13 18 18 C 1.36938 * 125.64679 * 203.96805 * 17 16 15 19 19 H 1.08001 * 119.99915 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00131 * 0.04490 * 18 17 16 21 21 N 1.31619 * 119.99904 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47188 * 59.99564 * 22 20 18 24 24 H 1.48499 * 109.46920 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47054 * 299.99647 * 22 20 18 26 26 C 1.47022 * 108.70573 * 24.00599 * 17 16 15 27 27 C 1.53049 * 109.53675 * 61.24114 * 12 11 10 28 28 C 1.46923 * 120.63655 * 184.43170 * 9 7 6 29 29 N 1.32097 * 120.42364 * 180.29104 * 2 1 3 30 30 H 1.08999 * 109.46632 * 90.00115 * 1 2 3 31 31 H 1.08999 * 109.47099 * 209.99886 * 1 2 3 32 32 H 1.08998 * 109.47406 * 330.00179 * 1 2 3 33 33 H 1.07999 * 120.74283 * 0.02562 * 3 2 1 34 34 H 1.08009 * 120.41506 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.58302 * 353.41893 * 10 9 7 36 36 H 1.08993 * 109.58536 * 113.84249 * 10 9 7 37 37 H 1.09001 * 109.56460 * 185.55505 * 11 10 9 38 38 H 1.09001 * 109.35955 * 65.49973 * 11 10 9 39 39 H 1.09005 * 109.46189 * 301.22399 * 12 11 10 40 40 H 1.08999 * 110.99915 * 271.93805 * 15 13 12 41 41 H 1.08999 * 110.99942 * 35.78290 * 15 13 12 42 42 H 1.08998 * 110.41904 * 204.29325 * 16 15 13 43 43 H 1.08997 * 110.30251 * 82.08813 * 16 15 13 44 44 H 0.97003 * 120.00006 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.88172 * 239.52131 * 26 17 16 46 46 H 1.09002 * 109.88453 * 118.35567 * 26 17 16 47 47 H 1.08995 * 109.49548 * 178.68353 * 27 12 11 48 48 H 1.08998 * 109.49394 * 58.58644 * 27 12 11 49 49 H 1.08996 * 109.58957 * 246.15660 * 28 9 7 50 50 H 1.08998 * 109.58307 * 6.44674 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1509 -0.0005 5 7 4.2020 -0.0236 -0.0016 6 6 3.5006 -1.1471 -0.0026 7 6 4.2171 -2.4482 -0.0031 8 8 3.8536 -3.3420 0.7348 9 7 5.2669 -2.6391 -0.8264 10 6 5.7714 -1.5415 -1.6630 11 6 5.8189 -2.0060 -3.1175 12 6 6.6367 -3.2961 -3.2123 13 6 6.7115 -3.7456 -4.6729 14 1 5.7142 -3.9435 -5.0655 15 6 7.4413 -2.6838 -5.5374 16 6 8.0029 -3.5569 -6.6900 17 7 8.3924 -4.8266 -6.0500 18 6 9.3263 -5.7072 -6.5271 19 1 9.5409 -6.6145 -5.9821 20 6 9.9975 -5.4334 -7.7108 21 7 9.7359 -4.3276 -8.3751 22 14 11.2710 -6.6350 -8.3619 23 1 10.6289 -7.9509 -8.6096 24 1 11.8386 -6.1148 -9.6317 25 1 12.3574 -6.7947 -7.3623 26 6 7.6115 -4.9913 -4.8153 27 6 5.9672 -4.3891 -2.3761 28 6 5.9250 -3.9502 -0.9090 29 7 2.1759 -1.1391 -0.0058 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6889 2.1433 0.0004 34 1 4.1745 2.0636 -0.0001 35 1 5.1072 -0.6816 -1.5769 36 1 6.7743 -1.2653 -1.3376 37 1 6.2835 -1.2348 -3.7319 38 1 4.8046 -2.1914 -3.4709 39 1 7.6437 -3.1163 -2.8356 40 1 6.7410 -1.9382 -5.9138 41 1 8.2485 -2.2118 -4.9773 42 1 8.8715 -3.0776 -7.1416 43 1 7.2333 -3.7315 -7.4418 44 1 10.2046 -4.1365 -9.2026 45 1 8.2823 -5.0638 -3.9593 46 1 6.9954 -5.8879 -4.8831 47 1 6.5373 -5.3140 -2.4628 48 1 4.9515 -4.5521 -2.7365 49 1 6.9407 -3.8744 -0.5209 50 1 5.3634 -4.6783 -0.3236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039122429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:06 Heat of formation + Delta-G solvation = 21.629633 kcal Electronic energy + Delta-G solvation = -30205.842266 eV Core-core repulsion = 26232.963558 eV Total energy + Delta-G solvation = -3972.878708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.49099 -41.01242 -39.72892 -38.03581 -35.77170 -35.15701 -33.87985 -33.36230 -32.25427 -30.93296 -29.69895 -29.22311 -27.26110 -26.52738 -24.91594 -24.21666 -24.08449 -22.32726 -21.82456 -20.87825 -20.50628 -18.90337 -18.83939 -18.60895 -17.56205 -16.88076 -16.77869 -16.60922 -16.27270 -15.78879 -15.73790 -15.61706 -15.13083 -15.02043 -14.56435 -14.46002 -14.32235 -14.19614 -14.06567 -13.89449 -13.41599 -13.28079 -13.25676 -13.18948 -12.91276 -12.69327 -12.52159 -12.36922 -12.26114 -12.19363 -12.03893 -11.82649 -11.71503 -11.57046 -11.37395 -11.28631 -11.03466 -10.97349 -10.71866 -10.51882 -10.38602 -9.79540 -8.85877 -7.75996 -5.20170 -0.53356 0.01789 1.28012 1.45847 1.49254 1.55581 1.58130 2.50400 2.55317 2.78545 3.11381 3.32521 3.53145 3.66204 3.67072 3.69746 3.80110 3.89100 4.03971 4.08239 4.19484 4.27595 4.30428 4.41189 4.43797 4.48201 4.57561 4.59999 4.70992 4.74939 4.78134 4.82264 4.84677 4.88074 4.92015 4.99248 5.03037 5.07203 5.13076 5.17185 5.24431 5.36433 5.40456 5.45688 5.48733 5.57681 5.70848 5.85530 5.88860 6.11919 6.33812 6.71946 6.91714 7.12979 7.81498 8.45633 9.25533 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002105 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.302580 B =13301.134507 C =13825.223178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.153 3.847 3 C -0.189 4.189 4 C 0.140 3.860 5 N -0.505 5.505 6 C 0.272 3.728 7 C 0.584 3.416 8 O -0.561 6.561 9 N -0.585 5.585 10 C 0.107 3.893 11 C -0.123 4.123 12 C -0.064 4.064 13 C -0.078 4.078 14 H 0.067 0.933 15 C -0.120 4.120 16 C 0.151 3.849 17 N -0.629 5.629 18 C -0.239 4.239 19 H 0.078 0.922 20 C -0.070 4.070 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.137 3.863 27 C -0.123 4.123 28 C 0.115 3.885 29 N -0.518 5.518 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.200 0.800 34 H 0.219 0.781 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.071 0.929 43 H -0.021 1.021 44 H 0.247 0.753 45 H 0.030 0.970 46 H 0.012 0.988 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.089 0.911 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.780 17.607 18.423 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 C -0.210 4.210 4 C -0.024 4.024 5 N -0.224 5.224 6 C 0.002 3.998 7 C 0.369 3.631 8 O -0.437 6.437 9 N -0.316 5.316 10 C -0.014 4.014 11 C -0.161 4.161 12 C -0.083 4.083 13 C -0.097 4.097 14 H 0.086 0.914 15 C -0.158 4.158 16 C 0.026 3.974 17 N -0.355 5.355 18 C -0.368 4.368 19 H 0.096 0.904 20 C -0.262 4.262 21 N -0.599 5.599 22 Si 0.808 3.192 23 H -0.207 1.207 24 H -0.218 1.218 25 H -0.201 1.201 26 C 0.012 3.988 27 C -0.161 4.161 28 C -0.007 4.007 29 N -0.235 5.235 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.217 0.783 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.089 0.911 43 H -0.003 1.003 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.030 0.970 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.352 16.197 18.650 29.624 hybrid contribution 0.285 -0.395 -0.817 0.951 sum -16.067 15.802 17.833 28.738 Atomic orbital electron populations 1.20948 0.85122 1.05284 1.04905 1.22547 0.99445 0.87741 0.89530 1.23495 0.96358 1.01496 0.99656 1.24165 0.93370 0.96055 0.88820 1.68461 1.41326 0.99134 1.13436 1.22371 0.87760 0.92984 0.96703 1.17695 0.79696 0.85078 0.80638 1.90751 1.67069 1.43872 1.42049 1.48046 1.29852 1.13564 1.40155 1.22105 1.01569 0.88692 0.89050 1.21886 1.00321 0.97804 0.96077 1.21049 0.99703 0.94762 0.92799 1.22057 0.97646 0.94483 0.95468 0.91420 1.22899 0.99240 0.96884 0.96769 1.21773 0.97245 0.85986 0.92425 1.44862 1.44285 1.22139 1.24228 1.19426 1.12586 1.00377 1.04450 0.90385 1.25647 1.02652 0.99881 0.98047 1.70063 1.45833 1.26396 1.17642 0.85124 0.78845 0.77974 0.77224 1.20666 1.21844 1.20138 1.21509 0.92546 0.96214 0.88490 1.21928 1.01282 0.99239 0.93638 1.21755 0.98285 0.83274 0.97358 1.68033 1.08595 1.33312 1.13548 0.88341 0.91088 0.86532 0.78330 0.76486 0.87975 0.89285 0.88837 0.92495 0.90390 0.90006 0.91404 0.91133 1.00298 0.94380 0.95194 0.96973 0.89937 0.92281 0.89278 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.22 71.24 0.73 -0.07 16 2 C 0.15 2.21 6.82 42.66 0.29 2.51 16 3 C -0.19 -1.42 9.87 22.54 0.22 -1.19 16 4 C 0.14 1.37 11.30 84.78 0.96 2.33 16 5 N -0.51 -9.49 7.62 -189.10 -1.44 -10.93 16 6 C 0.27 6.84 6.68 137.68 0.92 7.76 16 7 C 0.58 17.25 7.57 86.99 0.66 17.91 16 8 O -0.56 -20.42 16.52 -3.64 -0.06 -20.48 16 9 N -0.58 -14.39 2.98 -822.37 -2.45 -16.84 16 10 C 0.11 2.13 6.01 86.21 0.52 2.64 16 11 C -0.12 -2.57 5.17 30.53 0.16 -2.41 16 12 C -0.06 -1.60 1.53 -10.76 -0.02 -1.62 16 13 C -0.08 -2.53 2.48 -9.60 -0.02 -2.55 16 14 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.12 -4.26 5.50 32.06 0.18 -4.09 16 16 C 0.15 7.54 5.89 86.93 0.51 8.06 16 17 N -0.63 -33.23 3.40 -691.56 -2.35 -35.57 16 18 C -0.24 -13.76 10.27 84.03 0.86 -12.90 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 20 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 21 N -0.95 -57.51 10.09 21.65 0.22 -57.29 16 22 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 C 0.14 5.69 5.89 86.73 0.51 6.20 16 27 C -0.12 -2.98 5.20 30.68 0.16 -2.82 16 28 C 0.11 2.70 6.42 86.36 0.55 3.26 16 29 N -0.52 -12.62 10.28 -177.24 -1.82 -14.45 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 0.09 8.10 -2.39 -0.02 0.07 16 33 H 0.20 -0.40 8.06 -2.91 -0.02 -0.42 16 34 H 0.22 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.10 1.94 4.75 -2.39 -0.01 1.93 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.77 7.27 -2.39 -0.02 1.75 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.96 8.12 -2.38 -0.02 1.94 16 40 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 41 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 42 H 0.07 4.02 5.87 -2.39 -0.01 4.00 16 43 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.03 1.20 7.68 -2.39 -0.02 1.19 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 2.03 7.27 -2.39 -0.02 2.01 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.08 2.14 7.03 -2.39 -0.02 2.13 16 Total: -1.00 -81.06 391.83 2.71 -78.34 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.93 Total: 9.34 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 7.66 Total: 19.43 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -7.84 Total: -135.08 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -81.06 2.71 -78.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039122429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.974 kcal (2) G-P(sol) polarization free energy of solvation -81.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds