Wall clock time and date at job start Wed Apr 1 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38813 * 120.42755 * 2 1 4 4 C 1.39487 * 118.26155 * 180.27965 * 3 2 1 5 5 C 1.48457 * 120.54715 * 179.71672 * 4 3 2 6 6 O 1.21476 * 120.00377 * 349.77475 * 5 4 3 7 7 N 1.34780 * 119.99618 * 169.77098 * 5 4 3 8 8 C 1.46929 * 120.62741 * 172.96207 * 7 5 4 9 9 C 1.53190 * 108.77306 * 126.36721 * 8 7 5 10 10 C 1.53046 * 109.31301 * 54.64045 * 9 8 7 11 11 C 1.53000 * 109.45878 * 178.62706 * 10 9 8 12 12 H 1.08994 * 110.88695 * 60.72318 * 11 10 9 13 13 C 1.55152 * 111.00067 * 296.83948 * 11 10 9 14 14 C 1.54375 * 102.92011 * 206.45249 * 13 11 10 15 15 N 1.47027 * 107.28704 * 22.14687 * 14 13 11 16 16 C 1.36933 * 125.65067 * 181.05478 * 15 14 13 17 17 H 1.07998 * 120.00371 * 173.50139 * 16 15 14 18 18 C 1.38811 * 119.99925 * 353.50371 * 16 15 14 19 19 N 1.31620 * 120.00124 * 357.00279 * 18 16 15 20 20 Si 1.86797 * 120.00081 * 177.00385 * 18 16 15 21 21 H 1.48499 * 109.47045 * 94.52420 * 20 18 16 22 22 H 1.48503 * 109.47301 * 214.52163 * 20 18 16 23 23 H 1.48497 * 109.47204 * 334.52311 * 20 18 16 24 24 C 1.47422 * 108.70048 * 1.08570 * 15 14 13 25 25 C 1.53044 * 109.52076 * 298.63578 * 10 9 8 26 26 C 1.46918 * 120.63392 * 352.93979 * 7 5 4 27 27 N 1.33100 * 118.90239 * 359.44742 * 4 3 2 28 28 C 1.31558 * 120.74039 * 0.27150 * 27 4 3 29 29 N 1.31908 * 121.91396 * 0.02562 * 28 27 4 30 30 H 1.08997 * 109.47411 * 270.28165 * 1 2 3 31 31 H 1.09001 * 109.47317 * 30.27860 * 1 2 3 32 32 H 1.09000 * 109.47069 * 150.27623 * 1 2 3 33 33 H 1.08003 * 120.86285 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.58859 * 6.58118 * 8 7 5 35 35 H 1.08994 * 109.70166 * 246.22434 * 8 7 5 36 36 H 1.08991 * 109.50193 * 294.68462 * 9 8 7 37 37 H 1.09004 * 109.52159 * 174.60327 * 9 8 7 38 38 H 1.08994 * 109.46092 * 58.65172 * 10 9 8 39 39 H 1.08992 * 110.72628 * 324.78683 * 13 11 10 40 40 H 1.09004 * 110.71982 * 88.07132 * 13 11 10 41 41 H 1.08997 * 109.85242 * 262.73216 * 14 13 11 42 42 H 1.09008 * 110.02783 * 141.64844 * 14 13 11 43 43 H 0.97000 * 120.00582 * 179.97438 * 19 18 16 44 44 H 1.08999 * 110.36957 * 217.03438 * 24 15 14 45 45 H 1.09005 * 110.36717 * 94.71544 * 24 15 14 46 46 H 1.08998 * 109.49424 * 181.30950 * 25 10 9 47 47 H 1.09002 * 109.50050 * 301.40934 * 25 10 9 48 48 H 1.09003 * 109.58672 * 353.41735 * 26 7 5 49 49 H 1.08998 * 109.58826 * 113.69915 * 26 7 5 50 50 H 1.07991 * 119.04447 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0060 5 6 4.4061 2.3933 -0.0126 6 8 3.8625 3.4635 -0.1996 7 7 5.7377 2.3400 0.1890 8 6 6.5671 3.5428 0.0336 9 6 7.3849 3.7464 1.3129 10 6 8.1764 2.4720 1.6157 11 6 9.0209 2.6835 2.8740 12 1 8.3885 2.9035 3.7340 13 6 10.0727 3.8031 2.6560 14 6 11.1925 3.4225 3.6481 15 7 11.0545 1.9867 3.9330 16 6 11.8448 1.2625 4.7851 17 1 11.5986 0.2348 5.0079 18 6 12.9624 1.8493 5.3626 19 7 13.2960 3.0825 5.0458 20 14 13.9930 0.8888 6.5892 21 1 15.1257 0.2388 5.8824 22 1 14.5207 1.8139 7.6241 23 1 13.1518 -0.1498 7.2364 24 6 9.9247 1.4557 3.1489 25 6 7.2071 1.3095 1.8417 26 6 6.3874 1.0782 0.5687 27 7 4.2027 -0.0444 -0.0002 28 6 3.4954 -1.1537 0.0056 29 7 2.1764 -1.1397 0.0055 30 1 -0.3634 0.0051 1.0276 31 1 -0.3634 0.8875 -0.5182 32 1 -0.3633 -0.8924 -0.5095 33 1 1.6912 2.1442 0.0004 34 1 5.9269 4.4092 -0.1325 35 1 7.2402 3.4180 -0.8145 36 1 6.7133 3.9635 2.1434 37 1 8.0747 4.5791 1.1756 38 1 8.8298 2.2418 0.7743 39 1 10.4444 3.7890 1.6315 40 1 9.6539 4.7789 2.9022 41 1 11.0819 3.9955 4.5687 42 1 12.1681 3.6200 3.2037 43 1 14.0768 3.4927 5.4496 44 1 9.3818 0.7065 3.7251 45 1 10.2810 1.0293 2.2111 46 1 7.7704 0.4073 2.0803 47 1 6.5371 1.5496 2.6673 48 1 5.6287 0.3183 0.7556 49 1 7.0441 0.7485 -0.2365 50 1 4.0096 -2.1033 0.0098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039123048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:16 Heat of formation + Delta-G solvation = 28.411390 kcal Electronic energy + Delta-G solvation = -30125.663854 eV Core-core repulsion = 26153.079225 eV Total energy + Delta-G solvation = -3972.584629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.50496 -40.99029 -39.73222 -38.02506 -35.91093 -35.07642 -33.78786 -33.37448 -32.07939 -30.98104 -29.72577 -29.23180 -27.26058 -26.16400 -25.17123 -24.39646 -24.03917 -22.18234 -21.73832 -20.95160 -20.50669 -19.17906 -18.83450 -17.97517 -17.33455 -16.87828 -16.78027 -16.66064 -16.29824 -16.21663 -15.79081 -15.63691 -15.20974 -15.05036 -14.57909 -14.44079 -14.25876 -14.10267 -13.88725 -13.82880 -13.73177 -13.38743 -13.21413 -13.13152 -12.96116 -12.72517 -12.43320 -12.22793 -12.15375 -11.99033 -11.90009 -11.82135 -11.63469 -11.61843 -11.54150 -11.33817 -11.12911 -11.03832 -10.71315 -10.68786 -9.92259 -9.70558 -8.86428 -7.83755 -5.20753 -0.65051 -0.18810 1.44458 1.46542 1.55649 1.55724 1.74575 2.49615 2.64379 2.75843 3.02399 3.24032 3.33088 3.64708 3.66806 3.71246 3.85732 3.90430 3.96419 4.14056 4.21536 4.31218 4.35317 4.43253 4.47439 4.48647 4.55488 4.63052 4.73323 4.74131 4.80253 4.84179 4.89906 4.93992 4.96755 5.02481 5.06112 5.11368 5.19769 5.22232 5.25645 5.38733 5.43219 5.46305 5.59085 5.66244 5.72398 5.72962 5.80107 6.22278 6.23816 6.78464 6.93968 7.11138 7.80037 8.45382 9.25837 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020069 B = 0.002149 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.870111 B =13026.292142 C =14070.312028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.181 3.819 3 C -0.174 4.174 4 C 0.120 3.880 5 C 0.563 3.437 6 O -0.562 6.562 7 N -0.582 5.582 8 C 0.110 3.890 9 C -0.119 4.119 10 C -0.065 4.065 11 C -0.078 4.078 12 H 0.063 0.937 13 C -0.122 4.122 14 C 0.179 3.821 15 N -0.630 5.630 16 C -0.240 4.240 17 H 0.082 0.918 18 C -0.072 4.072 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.139 3.861 25 C -0.125 4.125 26 C 0.077 3.923 27 N -0.500 5.500 28 C 0.294 3.706 29 N -0.521 5.521 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.075 0.925 41 H -0.008 1.008 42 H 0.016 0.984 43 H 0.245 0.755 44 H 0.039 0.961 45 H 0.024 0.976 46 H 0.081 0.919 47 H 0.053 0.947 48 H 0.149 0.851 49 H 0.077 0.923 50 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.117 -5.872 -14.154 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.033 3.967 3 C -0.197 4.197 4 C -0.025 4.025 5 C 0.349 3.651 6 O -0.441 6.441 7 N -0.313 5.313 8 C -0.012 4.012 9 C -0.157 4.157 10 C -0.084 4.084 11 C -0.098 4.098 12 H 0.081 0.919 13 C -0.160 4.160 14 C 0.054 3.946 15 N -0.357 5.357 16 C -0.370 4.370 17 H 0.099 0.901 18 C -0.264 4.264 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.192 1.192 24 C 0.014 3.986 25 C -0.163 4.163 26 C -0.044 4.044 27 N -0.217 5.217 28 C 0.008 3.992 29 N -0.236 5.236 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.184 0.816 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.010 0.990 42 H 0.034 0.966 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.100 0.900 47 H 0.072 0.928 48 H 0.165 0.835 49 H 0.095 0.905 50 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -25.719 -6.122 -14.135 29.979 hybrid contribution 1.027 0.689 1.039 1.615 sum -24.692 -5.432 -13.096 28.473 Atomic orbital electron populations 1.20969 0.84715 1.05579 1.05167 1.22407 0.99525 0.87009 0.87721 1.22945 0.93941 1.02305 1.00482 1.21550 0.92696 0.92350 0.95943 1.18115 0.82364 0.87170 0.77453 1.90755 1.71311 1.30073 1.51946 1.48135 1.05723 1.12398 1.64996 1.21783 0.93592 0.87415 0.98423 1.21879 0.98539 0.98306 0.97023 1.21034 0.95723 0.95269 0.96388 1.22212 0.94902 0.94872 0.97769 0.91866 1.22757 0.95617 0.98534 0.99118 1.20970 0.95350 0.83972 0.94315 1.44850 1.34737 1.06028 1.50045 1.19482 1.03637 0.95594 1.18258 0.90053 1.25721 0.99704 0.97885 1.03139 1.70203 1.28044 1.14462 1.47451 0.85049 0.78632 0.77430 0.78157 1.21241 1.22182 1.19205 1.21754 0.87779 0.95373 0.93701 1.21969 0.97628 0.99009 0.97729 1.23071 0.99323 0.85763 0.96245 1.68340 1.39911 0.98778 1.14696 1.25830 0.86766 0.97678 0.88967 1.68343 1.10854 1.30771 1.13626 0.88006 0.88063 0.89014 0.81639 0.89650 0.89506 0.92489 0.89454 0.90372 0.90915 0.90588 0.98971 0.96577 0.94527 0.94316 0.95790 0.90028 0.92773 0.83455 0.90456 0.74951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.22 71.24 0.73 0.08 16 2 C 0.18 2.41 6.83 42.64 0.29 2.70 16 3 C -0.17 -2.80 9.41 22.71 0.21 -2.59 16 4 C 0.12 2.38 6.60 41.98 0.28 2.66 16 5 C 0.56 13.47 7.67 86.97 0.67 14.14 16 6 O -0.56 -16.20 15.90 -3.64 -0.06 -16.26 16 7 N -0.58 -12.64 2.97 -821.69 -2.44 -15.08 16 8 C 0.11 2.24 6.44 86.36 0.56 2.80 16 9 C -0.12 -2.59 5.20 30.67 0.16 -2.43 16 10 C -0.07 -1.57 1.65 -10.76 -0.02 -1.58 16 11 C -0.08 -2.54 2.56 -9.40 -0.02 -2.56 16 12 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 13 C -0.12 -4.41 5.43 31.80 0.17 -4.23 16 14 C 0.18 9.10 5.41 86.75 0.47 9.57 16 15 N -0.63 -33.19 3.39 -691.87 -2.35 -35.54 16 16 C -0.24 -13.81 10.27 84.03 0.86 -12.95 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -4.20 5.47 84.86 0.46 -3.74 16 19 N -0.95 -58.95 10.39 21.65 0.22 -58.72 16 20 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C 0.14 5.58 5.80 86.86 0.50 6.08 16 25 C -0.13 -2.73 5.21 30.66 0.16 -2.57 16 26 C 0.08 1.48 5.93 86.36 0.51 2.00 16 27 N -0.50 -8.56 6.32 -189.18 -1.20 -9.76 16 28 C 0.29 4.00 12.28 180.92 2.22 6.23 16 29 N -0.52 -7.77 10.36 -188.10 -1.95 -9.72 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.29 8.10 -2.39 -0.02 0.27 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.17 2.35 7.77 -2.91 -0.02 2.33 16 34 H 0.09 1.89 7.00 -2.39 -0.02 1.87 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.79 7.32 -2.38 -0.02 1.77 16 38 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 39 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 40 H 0.08 2.45 8.09 -2.38 -0.02 2.43 16 41 H -0.01 -0.46 7.81 -2.39 -0.02 -0.48 16 42 H 0.02 0.92 7.07 -2.38 -0.02 0.91 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 44 H 0.04 1.51 8.02 -2.39 -0.02 1.49 16 45 H 0.02 0.95 8.03 -2.38 -0.02 0.93 16 46 H 0.08 1.78 7.32 -2.39 -0.02 1.76 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.15 2.72 4.01 -60.81 -0.24 2.48 16 49 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.23 1.47 8.06 -2.92 -0.02 1.45 16 Total: -1.00 -75.02 390.47 3.17 -71.85 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.70 Total: 10.93 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 8.22 Total: 13.60 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -7.71 Total: -128.83 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.06 Total: -16.26 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.02 3.17 -71.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039123048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.260 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds