Wall clock time and date at job start Wed Apr 1 2020 03:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32166 * 120.53988 * 2 1 4 4 C 1.31852 * 120.96574 * 180.26823 * 3 2 1 5 5 N 1.31877 * 122.09786 * 359.74059 * 4 3 2 6 6 C 1.32137 * 120.96709 * 359.97438 * 5 4 3 7 7 C 1.39931 * 120.53529 * 179.72899 * 2 1 3 8 8 C 1.47827 * 120.93975 * 0.02562 * 7 2 1 9 9 O 1.21554 * 120.00180 * 305.28101 * 8 7 2 10 10 N 1.34776 * 120.00113 * 125.27827 * 8 7 2 11 11 C 1.46928 * 120.62978 * 3.43621 * 10 8 7 12 12 C 1.53195 * 108.77202 * 233.58481 * 11 10 8 13 13 C 1.53039 * 109.31610 * 305.36151 * 12 11 10 14 14 C 1.53040 * 109.53261 * 61.36767 * 13 12 11 15 15 C 1.46925 * 120.63402 * 183.41225 * 10 8 7 16 16 H 1.08996 * 109.70403 * 246.27604 * 15 10 8 17 17 C 1.53001 * 109.58390 * 6.62545 * 15 10 8 18 18 H 1.09002 * 110.88846 * 42.18749 * 17 15 10 19 19 C 1.55161 * 111.00717 * 278.26499 * 17 15 10 20 20 C 1.54314 * 102.94518 * 206.42376 * 19 17 15 21 21 N 1.47026 * 107.27221 * 22.19068 * 20 19 17 22 22 C 1.36938 * 125.64996 * 181.01732 * 21 20 19 23 23 H 1.08004 * 120.00182 * 185.08916 * 22 21 20 24 24 C 1.38811 * 119.99786 * 5.10354 * 22 21 20 25 25 N 1.31615 * 120.00601 * 5.13007 * 24 22 21 26 26 Si 1.86803 * 119.99802 * 185.13408 * 24 22 21 27 27 H 1.48503 * 109.47093 * 94.99439 * 26 24 22 28 28 H 1.48498 * 109.47346 * 214.99454 * 26 24 22 29 29 H 1.48501 * 109.47145 * 334.99597 * 26 24 22 30 30 C 1.47428 * 108.69999 * 1.06172 * 21 20 19 31 31 H 1.09000 * 109.47130 * 265.19419 * 1 2 3 32 32 H 1.09005 * 109.46493 * 25.19165 * 1 2 3 33 33 H 1.08997 * 109.46909 * 145.19201 * 1 2 3 34 34 H 1.07999 * 118.94782 * 179.72452 * 4 3 2 35 35 H 1.07998 * 120.53867 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.58846 * 113.80045 * 11 10 8 37 37 H 1.09000 * 109.70314 * 353.43831 * 11 10 8 38 38 H 1.09008 * 109.49510 * 185.41433 * 12 11 10 39 39 H 1.08999 * 109.50011 * 65.31937 * 12 11 10 40 40 H 1.09003 * 109.45969 * 301.34955 * 13 12 11 41 41 H 1.09000 * 109.45210 * 181.37863 * 13 12 11 42 42 H 1.09010 * 109.49726 * 178.68343 * 14 13 12 43 43 H 1.08995 * 109.52823 * 58.60785 * 14 13 12 44 44 H 1.09001 * 110.71615 * 324.78844 * 19 17 15 45 45 H 1.08994 * 110.71725 * 88.05589 * 19 17 15 46 46 H 1.09000 * 109.88720 * 262.77588 * 20 19 17 47 47 H 1.09004 * 110.01667 * 141.67894 * 20 19 17 48 48 H 0.96996 * 120.00429 * 180.02562 * 25 24 22 49 49 H 1.08999 * 110.36248 * 217.03010 * 30 21 20 50 50 H 1.09000 * 110.36749 * 94.70828 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4971 1.1481 -0.0053 5 7 4.2061 0.0362 -0.0057 6 6 3.6164 -1.1463 -0.0003 7 6 2.2180 -1.2052 0.0057 8 6 1.5120 -2.5040 0.0113 9 8 0.6873 -2.7438 0.8714 10 7 1.7829 -3.4223 -0.9373 11 6 2.8299 -3.1778 -1.9386 12 6 2.2303 -3.3678 -3.3355 13 6 1.5857 -4.7529 -3.4256 14 6 0.4575 -4.8601 -2.3970 15 6 1.0371 -4.6871 -0.9895 16 1 1.7061 -5.5178 -0.7652 17 6 -0.1005 -4.6543 0.0331 18 1 -0.5996 -3.6853 0.0282 19 6 0.4173 -5.0069 1.4526 20 6 -0.8356 -5.5845 2.1440 21 7 -1.7468 -6.0422 1.0848 22 6 -2.9815 -6.6012 1.2806 23 1 -3.5419 -6.9811 0.4391 24 6 -3.5128 -6.6793 2.5606 25 7 -2.8772 -6.1268 3.5720 26 14 -5.1302 -7.5689 2.8477 27 1 -4.8584 -8.9700 3.2579 28 1 -5.8915 -6.8782 3.9194 29 1 -5.9262 -7.5656 1.5941 30 6 -1.1106 -5.8005 -0.2230 31 1 -0.3633 -0.0861 1.0241 32 1 -0.3632 0.9300 -0.4375 33 1 -0.3633 -0.8438 -0.5866 34 1 4.0128 2.0970 -0.0097 35 1 4.2038 -2.0525 -0.0003 36 1 3.6472 -3.8841 -1.7927 37 1 3.2047 -2.1593 -1.8373 38 1 3.0182 -3.2838 -4.0841 39 1 1.4749 -2.6026 -3.5143 40 1 2.3363 -5.5167 -3.2223 41 1 1.1797 -4.8999 -4.4264 42 1 -0.0165 -5.8384 -2.4776 43 1 -0.2816 -4.0813 -2.5844 44 1 1.2081 -5.7552 1.3997 45 1 0.7651 -4.1125 1.9693 46 1 -1.3195 -4.8113 2.7407 47 1 -0.5566 -6.4239 2.7811 48 1 -3.2483 -6.1817 4.4664 49 1 -1.8560 -5.4924 -0.9563 50 1 -0.5902 -6.6958 -0.5630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039192216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:42 Heat of formation + Delta-G solvation = 69.649272 kcal Electronic energy + Delta-G solvation = -31962.010006 eV Core-core repulsion = 27991.213586 eV Total energy + Delta-G solvation = -3970.796420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.69598 -40.35143 -37.53136 -36.93238 -34.71184 -33.73020 -32.90206 -32.28140 -31.05603 -29.07993 -28.83053 -27.25395 -25.97646 -24.56278 -24.44965 -23.43381 -22.63038 -21.36046 -19.84014 -19.66976 -19.54752 -18.11373 -17.16927 -17.06670 -16.64293 -16.16150 -15.53719 -15.08230 -14.83206 -14.55224 -14.49835 -14.09709 -14.06225 -13.80678 -13.55902 -13.39586 -13.22039 -13.18221 -13.00079 -12.46071 -12.26369 -12.10060 -11.97118 -11.75631 -11.59161 -11.35259 -11.15667 -10.93164 -10.85862 -10.79683 -10.67671 -10.64168 -10.03447 -9.94952 -9.84640 -9.67581 -9.57361 -9.53151 -9.41992 -8.90848 -8.50388 -8.39641 -6.65992 -5.56596 -2.92128 0.33068 0.71521 2.54442 2.82087 3.42057 3.46098 3.50604 3.53210 3.72729 3.79921 4.07793 4.20938 4.50076 4.59551 4.63300 4.70758 4.75953 4.92450 4.98666 5.13612 5.16726 5.20760 5.32229 5.46540 5.49600 5.53580 5.55529 5.59876 5.70179 5.70423 5.80079 5.82664 5.94347 6.00239 6.05983 6.07452 6.11831 6.25867 6.34640 6.48614 6.57651 6.59824 6.75010 6.93715 7.07944 7.27356 7.32888 7.68336 7.71741 7.85618 8.05115 8.22740 8.43273 9.35253 9.96828 10.65005 11.52502 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.003359 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.114306 B = 8333.614624 C = 9548.843261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.224 3.776 3 N -0.521 5.521 4 C 0.307 3.693 5 N -0.527 5.527 6 C 0.177 3.823 7 C -0.228 4.228 8 C 0.550 3.450 9 O -0.477 6.477 10 N -0.599 5.599 11 C 0.102 3.898 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.132 4.132 15 C 0.161 3.839 16 H 0.072 0.928 17 C -0.092 4.092 18 H 0.101 0.899 19 C -0.131 4.131 20 C 0.176 3.824 21 N -0.604 5.604 22 C -0.226 4.226 23 H 0.075 0.925 24 C -0.010 4.010 25 N -0.918 5.918 26 Si 0.908 3.092 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.139 3.861 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.199 0.801 35 H 0.171 0.829 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.022 0.978 48 H 0.250 0.750 49 H 0.033 0.967 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.928 11.359 -14.392 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 N -0.236 5.236 4 C 0.020 3.980 5 N -0.241 5.241 6 C 0.011 3.989 7 C -0.236 4.236 8 C 0.336 3.664 9 O -0.351 6.351 10 N -0.333 5.333 11 C -0.021 4.021 12 C -0.172 4.172 13 C -0.158 4.158 14 C -0.170 4.170 15 C 0.059 3.941 16 H 0.090 0.910 17 C -0.111 4.111 18 H 0.118 0.882 19 C -0.169 4.169 20 C 0.051 3.949 21 N -0.330 5.330 22 C -0.355 4.355 23 H 0.093 0.907 24 C -0.206 4.206 25 N -0.565 5.565 26 Si 0.739 3.261 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 C 0.012 3.988 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.216 0.784 35 H 0.189 0.811 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.060 0.940 49 H 0.051 0.949 50 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 15.789 12.065 -13.732 24.154 hybrid contribution -0.986 -1.303 0.185 1.644 sum 14.803 10.762 -13.547 22.770 Atomic orbital electron populations 1.20887 0.86809 1.03980 1.05045 1.21883 0.97905 0.86526 0.85929 1.68370 1.10275 1.29685 1.15238 1.25132 0.86772 0.97193 0.88910 1.68444 1.41419 0.98940 1.15265 1.23452 0.90702 0.96634 0.88109 1.21817 0.96546 0.96733 1.08489 1.17871 0.83695 0.82677 0.82178 1.90969 1.31964 1.76727 1.35465 1.48000 1.37238 1.18501 1.29543 1.21879 0.90282 1.01718 0.88247 1.21908 1.00738 0.98476 0.96076 1.21542 0.98275 0.96458 0.99480 1.22032 0.97885 1.03398 0.93672 1.21406 0.93316 0.83760 0.95653 0.90979 1.22756 0.94263 1.00432 0.93696 0.88161 1.23229 0.98375 0.99403 0.95865 1.21157 0.86657 0.97166 0.89872 1.44485 1.16390 1.72238 0.99862 1.19053 0.92320 1.31000 0.93083 0.90714 1.24806 0.98715 1.01162 0.95911 1.69999 1.39205 1.48241 0.99098 0.86148 0.83305 0.79168 0.77447 1.21811 1.21824 1.20713 1.21643 0.93532 0.93926 0.89711 0.88226 0.89821 0.89815 0.78422 0.81147 0.90914 0.90371 0.90883 0.91551 0.91728 0.91650 0.89895 0.91380 0.94537 0.89565 0.92499 0.95984 0.93973 0.94864 0.97136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.29 36.01 0.33 -0.90 16 2 C 0.22 2.66 6.86 -81.81 -0.56 2.10 16 3 N -0.52 -5.89 10.36 -10.48 -0.11 -6.00 16 4 C 0.31 2.93 12.27 -92.03 -1.13 1.80 16 5 N -0.53 -5.36 10.42 -14.24 -0.15 -5.50 16 6 C 0.18 1.77 8.77 -16.77 -0.15 1.62 16 7 C -0.23 -2.66 4.87 -104.69 -0.51 -3.17 16 8 C 0.55 7.39 6.02 -12.34 -0.07 7.31 16 9 O -0.48 -8.23 9.23 5.32 0.05 -8.18 16 10 N -0.60 -6.93 2.97 -166.33 -0.49 -7.43 16 11 C 0.10 0.83 5.60 -3.71 -0.02 0.81 16 12 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 13 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 14 C -0.13 -1.49 4.77 -26.61 -0.13 -1.62 16 15 C 0.16 2.16 2.64 -67.60 -0.18 1.98 16 16 H 0.07 0.97 7.78 -51.93 -0.40 0.57 16 17 C -0.09 -1.67 1.94 -88.47 -0.17 -1.84 16 18 H 0.10 2.01 5.97 -51.93 -0.31 1.70 16 19 C -0.13 -2.70 5.67 -24.90 -0.14 -2.84 16 20 C 0.18 4.62 5.43 -3.07 -0.02 4.60 16 21 N -0.60 -16.22 3.39 -170.07 -0.58 -16.79 16 22 C -0.23 -6.56 10.27 -15.06 -0.15 -6.71 16 23 H 0.07 2.08 7.83 -52.48 -0.41 1.67 16 24 C -0.01 -0.28 5.46 -17.43 -0.10 -0.38 16 25 N -0.92 -28.23 10.40 55.49 0.58 -27.65 16 26 Si 0.91 22.82 29.56 -169.99 -5.02 17.79 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.14 2.93 5.31 -2.53 -0.01 2.92 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.98 7.29 -51.93 -0.38 0.60 16 34 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.17 1.32 7.49 -52.49 -0.39 0.92 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.60 4.81 -51.93 -0.25 0.35 16 38 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.99 7.00 -51.92 -0.36 0.62 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.71 7.79 -51.93 -0.40 0.30 16 45 H 0.09 1.81 5.47 -52.54 -0.29 1.52 16 46 H 0.06 1.68 6.97 -51.93 -0.36 1.32 16 47 H 0.02 0.63 7.89 -51.93 -0.41 0.22 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.01 0.23 7.64 -51.93 -0.40 -0.17 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -34.24 378.35 -11.08 -45.32 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.73 Total: -0.59 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -3.33 Total: 3.33 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.75 Total: -63.37 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.05 Total: -8.18 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.24 -11.08 -45.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039192216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.968 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds