Wall clock time and date at job start Wed Apr 1 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32166 * 120.53988 * 2 1 4 4 C 1.31852 * 120.96574 * 180.26823 * 3 2 1 5 5 N 1.31877 * 122.09786 * 359.74059 * 4 3 2 6 6 C 1.32137 * 120.96709 * 359.97438 * 5 4 3 7 7 C 1.39931 * 120.53529 * 179.72899 * 2 1 3 8 8 C 1.47827 * 120.93975 * 0.02562 * 7 2 1 9 9 O 1.21554 * 120.00180 * 305.28101 * 8 7 2 10 10 N 1.34776 * 120.00113 * 125.27827 * 8 7 2 11 11 C 1.46928 * 120.62978 * 3.43621 * 10 8 7 12 12 C 1.53195 * 108.77202 * 233.58481 * 11 10 8 13 13 C 1.53039 * 109.31610 * 305.36151 * 12 11 10 14 14 C 1.53040 * 109.53261 * 61.36767 * 13 12 11 15 15 C 1.46925 * 120.63402 * 183.41225 * 10 8 7 16 16 H 1.08996 * 109.70403 * 246.27604 * 15 10 8 17 17 C 1.53001 * 109.58390 * 6.62545 * 15 10 8 18 18 H 1.09002 * 110.88846 * 42.18749 * 17 15 10 19 19 C 1.55161 * 111.00717 * 278.26499 * 17 15 10 20 20 C 1.54314 * 102.94518 * 206.42376 * 19 17 15 21 21 N 1.47026 * 107.27221 * 22.19068 * 20 19 17 22 22 C 1.36938 * 125.64996 * 181.01732 * 21 20 19 23 23 H 1.08004 * 120.00182 * 185.08916 * 22 21 20 24 24 C 1.38811 * 119.99786 * 5.10354 * 22 21 20 25 25 N 1.31615 * 120.00601 * 5.13007 * 24 22 21 26 26 Si 1.86803 * 119.99802 * 185.13408 * 24 22 21 27 27 H 1.48503 * 109.47093 * 94.99439 * 26 24 22 28 28 H 1.48498 * 109.47346 * 214.99454 * 26 24 22 29 29 H 1.48501 * 109.47145 * 334.99597 * 26 24 22 30 30 C 1.47428 * 108.69999 * 1.06172 * 21 20 19 31 31 H 1.09000 * 109.47130 * 265.19419 * 1 2 3 32 32 H 1.09005 * 109.46493 * 25.19165 * 1 2 3 33 33 H 1.08997 * 109.46909 * 145.19201 * 1 2 3 34 34 H 1.07999 * 118.94782 * 179.72452 * 4 3 2 35 35 H 1.07998 * 120.53867 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.58846 * 113.80045 * 11 10 8 37 37 H 1.09000 * 109.70314 * 353.43831 * 11 10 8 38 38 H 1.09008 * 109.49510 * 185.41433 * 12 11 10 39 39 H 1.08999 * 109.50011 * 65.31937 * 12 11 10 40 40 H 1.09003 * 109.45969 * 301.34955 * 13 12 11 41 41 H 1.09000 * 109.45210 * 181.37863 * 13 12 11 42 42 H 1.09010 * 109.49726 * 178.68343 * 14 13 12 43 43 H 1.08995 * 109.52823 * 58.60785 * 14 13 12 44 44 H 1.09001 * 110.71615 * 324.78844 * 19 17 15 45 45 H 1.08994 * 110.71725 * 88.05589 * 19 17 15 46 46 H 1.09000 * 109.88720 * 262.77588 * 20 19 17 47 47 H 1.09004 * 110.01667 * 141.67894 * 20 19 17 48 48 H 0.96996 * 120.00429 * 180.02562 * 25 24 22 49 49 H 1.08999 * 110.36248 * 217.03010 * 30 21 20 50 50 H 1.09000 * 110.36749 * 94.70828 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4971 1.1481 -0.0053 5 7 4.2061 0.0362 -0.0057 6 6 3.6164 -1.1463 -0.0003 7 6 2.2180 -1.2052 0.0057 8 6 1.5120 -2.5040 0.0113 9 8 0.6873 -2.7438 0.8714 10 7 1.7829 -3.4223 -0.9373 11 6 2.8299 -3.1778 -1.9386 12 6 2.2303 -3.3678 -3.3355 13 6 1.5857 -4.7529 -3.4256 14 6 0.4575 -4.8601 -2.3970 15 6 1.0371 -4.6871 -0.9895 16 1 1.7061 -5.5178 -0.7652 17 6 -0.1005 -4.6543 0.0331 18 1 -0.5996 -3.6853 0.0282 19 6 0.4173 -5.0069 1.4526 20 6 -0.8356 -5.5845 2.1440 21 7 -1.7468 -6.0422 1.0848 22 6 -2.9815 -6.6012 1.2806 23 1 -3.5419 -6.9811 0.4391 24 6 -3.5128 -6.6793 2.5606 25 7 -2.8772 -6.1268 3.5720 26 14 -5.1302 -7.5689 2.8477 27 1 -4.8584 -8.9700 3.2579 28 1 -5.8915 -6.8782 3.9194 29 1 -5.9262 -7.5656 1.5941 30 6 -1.1106 -5.8005 -0.2230 31 1 -0.3633 -0.0861 1.0241 32 1 -0.3632 0.9300 -0.4375 33 1 -0.3633 -0.8438 -0.5866 34 1 4.0128 2.0970 -0.0097 35 1 4.2038 -2.0525 -0.0003 36 1 3.6472 -3.8841 -1.7927 37 1 3.2047 -2.1593 -1.8373 38 1 3.0182 -3.2838 -4.0841 39 1 1.4749 -2.6026 -3.5143 40 1 2.3363 -5.5167 -3.2223 41 1 1.1797 -4.8999 -4.4264 42 1 -0.0165 -5.8384 -2.4776 43 1 -0.2816 -4.0813 -2.5844 44 1 1.2081 -5.7552 1.3997 45 1 0.7651 -4.1125 1.9693 46 1 -1.3195 -4.8113 2.7407 47 1 -0.5566 -6.4239 2.7811 48 1 -3.2483 -6.1817 4.4664 49 1 -1.8560 -5.4924 -0.9563 50 1 -0.5902 -6.6958 -0.5630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039192216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:41 Heat of formation + Delta-G solvation = 48.658027 kcal Electronic energy + Delta-G solvation = -31962.920255 eV Core-core repulsion = 27991.213586 eV Total energy + Delta-G solvation = -3971.706669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.58911 -41.36745 -38.81057 -38.31990 -35.53367 -35.11098 -34.17284 -33.32195 -32.46223 -30.86965 -29.76918 -28.75217 -27.19042 -26.21341 -25.31355 -24.43723 -23.71383 -22.44807 -21.56584 -21.11550 -20.54936 -18.98354 -18.80682 -18.00499 -17.85270 -17.26916 -16.71379 -16.46025 -16.31421 -15.75815 -15.66779 -15.26329 -15.12414 -14.83301 -14.66795 -14.34361 -14.23197 -14.15432 -14.01498 -13.93212 -13.66681 -13.62463 -13.33283 -13.20978 -12.85153 -12.77516 -12.52741 -12.25289 -12.16935 -11.98482 -11.92278 -11.71922 -11.70826 -11.49952 -11.38938 -11.25812 -11.09634 -10.76109 -10.62991 -10.38295 -10.06569 -9.50626 -8.84722 -7.80663 -5.19720 -0.48893 -0.11164 1.43103 1.46313 1.53723 1.55354 1.87804 2.50110 2.60646 2.93591 3.08704 3.26990 3.30689 3.36427 3.65734 3.77029 3.85203 3.90159 3.97807 4.07967 4.23462 4.25670 4.28737 4.36629 4.37310 4.43458 4.52577 4.57813 4.66748 4.69715 4.71877 4.76866 4.90751 4.94610 4.96733 4.98382 5.08686 5.12962 5.22412 5.24781 5.28015 5.30186 5.44711 5.49583 5.55496 5.73198 5.75409 5.78718 5.88728 6.23023 6.36912 6.92633 7.10811 7.18434 7.80900 8.47631 9.27636 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.003359 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.114306 B = 8333.614624 C = 9548.843261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.213 3.787 3 N -0.535 5.535 4 C 0.310 3.690 5 N -0.531 5.531 6 C 0.188 3.812 7 C -0.240 4.240 8 C 0.552 3.448 9 O -0.527 6.527 10 N -0.593 5.593 11 C 0.098 3.902 12 C -0.130 4.130 13 C -0.114 4.114 14 C -0.129 4.129 15 C 0.168 3.832 16 H 0.083 0.917 17 C -0.071 4.071 18 H 0.079 0.921 19 C -0.114 4.114 20 C 0.187 3.813 21 N -0.627 5.627 22 C -0.242 4.242 23 H 0.084 0.916 24 C -0.072 4.072 25 N -0.952 5.952 26 Si 0.981 3.019 27 H -0.287 1.287 28 H -0.295 1.295 29 H -0.264 1.264 30 C 0.136 3.864 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.196 0.804 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.011 0.989 47 H -0.015 1.015 48 H 0.244 0.756 49 H 0.036 0.964 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.213 11.562 -17.272 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.067 3.933 3 N -0.249 5.249 4 C 0.024 3.976 5 N -0.244 5.244 6 C 0.022 3.978 7 C -0.247 4.247 8 C 0.339 3.661 9 O -0.405 6.405 10 N -0.325 5.325 11 C -0.024 4.024 12 C -0.168 4.168 13 C -0.151 4.151 14 C -0.167 4.167 15 C 0.065 3.935 16 H 0.101 0.899 17 C -0.091 4.091 18 H 0.097 0.903 19 C -0.151 4.151 20 C 0.062 3.938 21 N -0.353 5.353 22 C -0.371 4.371 23 H 0.101 0.899 24 C -0.265 4.265 25 N -0.602 5.602 26 Si 0.809 3.191 27 H -0.214 1.214 28 H -0.222 1.222 29 H -0.188 1.188 30 C 0.010 3.990 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.213 0.787 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.029 0.971 47 H 0.003 0.997 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 18.113 12.274 -16.693 27.521 hybrid contribution -1.642 -1.300 1.041 2.339 sum 16.471 10.974 -15.652 25.233 Atomic orbital electron populations 1.20794 0.87249 1.04236 1.03961 1.21927 0.97987 0.87115 0.86271 1.68421 1.11223 1.29294 1.16012 1.25867 0.86289 0.98425 0.87059 1.68568 1.41251 0.99092 1.15532 1.23813 0.89928 0.97586 0.86502 1.21639 0.97317 0.95502 1.10280 1.18136 0.82878 0.83344 0.81712 1.90938 1.34270 1.77759 1.37559 1.48051 1.37472 1.17282 1.29712 1.22188 0.89725 1.02978 0.87495 1.21905 1.01215 0.97477 0.96186 1.21517 0.97332 0.97453 0.98826 1.21987 0.98868 1.02666 0.93160 1.21196 0.91954 0.85024 0.95291 0.89945 1.22485 0.95103 0.97930 0.93539 0.90266 1.23056 0.95889 0.99290 0.96906 1.20867 0.88679 0.94453 0.89818 1.44835 1.16250 1.72119 1.02143 1.19518 0.93348 1.30718 0.93519 0.89854 1.25754 1.02628 1.02392 0.95723 1.70265 1.40943 1.49774 0.99178 0.85022 0.78925 0.77565 0.77614 1.21369 1.22222 1.18849 1.21856 0.94196 0.95597 0.87314 0.89828 0.88398 0.90867 0.75043 0.78719 0.88419 0.89556 0.88099 0.92617 0.90416 0.90441 0.90405 0.92572 0.92977 0.89714 0.97114 0.99718 0.94681 0.94544 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.29 71.24 0.66 -1.81 16 2 C 0.21 4.97 6.86 42.92 0.29 5.26 16 3 N -0.53 -11.35 10.36 -187.06 -1.94 -13.29 16 4 C 0.31 5.13 12.27 180.84 2.22 7.35 16 5 N -0.53 -9.29 10.42 -198.98 -2.07 -11.36 16 6 C 0.19 3.27 8.77 85.07 0.75 4.01 16 7 C -0.24 -5.33 4.87 -19.91 -0.10 -5.43 16 8 C 0.55 14.61 6.02 86.78 0.52 15.14 16 9 O -0.53 -18.92 9.23 -3.89 -0.04 -18.96 16 10 N -0.59 -12.62 2.97 -798.43 -2.37 -14.99 16 11 C 0.10 1.23 5.60 86.36 0.48 1.71 16 12 C -0.13 -1.44 6.08 30.67 0.19 -1.26 16 13 C -0.11 -1.49 5.88 30.62 0.18 -1.31 16 14 C -0.13 -2.66 4.77 30.67 0.15 -2.51 16 15 C 0.17 4.24 2.64 44.97 0.12 4.36 16 16 H 0.08 1.98 7.78 -2.39 -0.02 1.96 16 17 C -0.07 -2.62 1.94 -9.40 -0.02 -2.64 16 18 H 0.08 3.32 5.97 -2.73 -0.02 3.31 16 19 C -0.11 -4.84 5.67 31.78 0.18 -4.66 16 20 C 0.19 10.43 5.43 86.72 0.47 10.90 16 21 N -0.63 -35.00 3.39 -691.99 -2.35 -37.35 16 22 C -0.24 -14.43 10.27 84.03 0.86 -13.57 16 23 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 24 C -0.07 -4.39 5.46 84.86 0.46 -3.93 16 25 N -0.95 -61.70 10.40 21.65 0.23 -61.47 16 26 Si 0.98 48.12 29.56 68.60 2.03 50.15 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 30 C 0.14 5.80 5.31 86.85 0.46 6.26 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.10 1.91 8.14 -2.38 -0.02 1.90 16 33 H 0.07 1.83 7.29 -2.39 -0.02 1.81 16 34 H 0.23 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.20 2.31 7.49 -2.91 -0.02 2.28 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.00 4.81 -2.39 -0.01 0.99 16 38 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.70 7.00 -2.38 -0.02 1.68 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 2.02 7.79 -2.39 -0.02 2.00 16 45 H 0.08 3.72 5.47 -12.25 -0.07 3.66 16 46 H 0.01 0.68 6.97 -2.39 -0.02 0.67 16 47 H -0.02 -0.95 7.89 -2.38 -0.02 -0.97 16 48 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 50 H 0.03 1.10 7.64 -2.39 -0.02 1.08 16 Total: -1.00 -79.52 378.35 2.25 -77.27 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.89 Total: 12.11 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 7.88 Total: 17.89 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -8.51 Total: -138.46 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.04 Total: -18.96 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -79.52 2.25 -77.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039192216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.923 kcal (2) G-P(sol) polarization free energy of solvation -79.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds