Wall clock time and date at job start Wed Apr 1 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32155 * 120.53935 * 2 1 4 4 C 1.31857 * 120.96805 * 180.02562 * 3 2 1 5 5 N 1.31884 * 122.09573 * 0.03139 * 4 3 2 6 6 C 1.32131 * 120.96621 * 359.65150 * 5 4 3 7 7 C 1.39928 * 120.53524 * 180.02562 * 2 1 3 8 8 C 1.47831 * 120.93978 * 359.97438 * 7 2 1 9 9 O 1.21557 * 120.00146 * 50.75991 * 8 7 2 10 10 N 1.34777 * 120.00294 * 231.03691 * 8 7 2 11 11 C 1.46927 * 120.62616 * 6.46048 * 10 8 7 12 12 C 1.53192 * 108.77262 * 126.37310 * 11 10 8 13 13 C 1.53038 * 109.31470 * 54.63629 * 12 11 10 14 14 C 1.53044 * 109.53608 * 298.63418 * 13 12 11 15 15 C 1.46922 * 120.63466 * 186.18681 * 10 8 7 16 16 H 1.08995 * 109.59156 * 113.84110 * 15 10 8 17 17 C 1.53006 * 109.58636 * 353.41320 * 15 10 8 18 18 H 1.08998 * 110.63885 * 313.46110 * 17 15 10 19 19 C 1.55156 * 110.71801 * 76.60036 * 17 15 10 20 20 C 1.55118 * 101.48688 * 153.73372 * 19 17 15 21 21 N 1.47425 * 104.94191 * 323.22602 * 20 19 17 22 22 C 1.36935 * 125.64455 * 204.03993 * 21 20 19 23 23 H 1.08006 * 119.99985 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00527 * 359.95412 * 22 21 20 25 25 N 1.31617 * 119.99631 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00248 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47447 * 89.99869 * 26 24 22 28 28 H 1.48501 * 109.46947 * 209.99875 * 26 24 22 29 29 H 1.48499 * 109.47107 * 329.99665 * 26 24 22 30 30 C 1.47014 * 108.70505 * 23.99940 * 21 20 19 31 31 H 1.08998 * 109.46647 * 274.23141 * 1 2 3 32 32 H 1.09002 * 109.47058 * 34.22641 * 1 2 3 33 33 H 1.08990 * 109.47306 * 154.23302 * 1 2 3 34 34 H 1.08001 * 118.94952 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.54048 * 180.33492 * 6 5 4 36 36 H 1.09005 * 109.58672 * 246.15873 * 11 10 8 37 37 H 1.08996 * 109.59081 * 6.58120 * 11 10 8 38 38 H 1.09008 * 109.49805 * 174.58598 * 12 11 10 39 39 H 1.08995 * 109.49986 * 294.64627 * 12 11 10 40 40 H 1.08995 * 109.46083 * 58.65586 * 13 12 11 41 41 H 1.09001 * 109.45893 * 178.61488 * 13 12 11 42 42 H 1.08996 * 109.49608 * 181.32192 * 14 13 12 43 43 H 1.09007 * 109.49679 * 301.37977 * 14 13 12 44 44 H 1.09001 * 111.00631 * 271.94044 * 19 17 15 45 45 H 1.08999 * 111.00579 * 35.78847 * 19 17 15 46 46 H 1.08999 * 110.41992 * 204.29136 * 20 19 17 47 47 H 1.08999 * 110.20541 * 82.03998 * 20 19 17 48 48 H 0.97004 * 120.00440 * 179.97438 * 25 24 22 49 49 H 1.09006 * 109.88160 * 239.52442 * 30 21 20 50 50 H 1.08998 * 109.88453 * 118.36470 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1382 0.0000 4 6 3.4971 1.1481 -0.0005 5 7 4.2062 0.0361 -0.0016 6 6 3.6164 -1.1463 0.0046 7 6 2.2180 -1.2052 -0.0005 8 6 1.5120 -2.5041 -0.0006 9 8 0.6364 -2.7199 -0.8156 10 7 1.8354 -3.4469 0.9066 11 6 2.7846 -3.1506 1.9883 12 6 2.1308 -3.5026 3.3282 13 6 1.6530 -4.9561 3.2919 14 6 0.6086 -5.1240 2.1859 15 6 1.2409 -4.7886 0.8364 16 1 2.0157 -5.5201 0.6072 17 6 0.1663 -4.8171 -0.2525 18 1 -0.4875 -3.9489 -0.1698 19 6 0.8137 -4.8847 -1.6609 20 6 -0.3062 -5.5750 -2.4828 21 7 -0.9024 -6.5592 -1.5613 22 6 -1.5784 -7.6912 -1.9311 23 1 -1.9790 -8.3518 -1.1763 24 6 -1.7492 -7.9896 -3.2760 25 7 -1.2618 -7.1842 -4.1958 26 14 -2.6719 -9.5335 -3.7803 27 1 -4.1172 -9.2227 -3.9212 28 1 -2.1425 -10.0249 -5.0778 29 1 -2.4896 -10.5803 -2.7429 30 6 -0.6502 -6.1246 -0.1797 31 1 -0.3632 0.0758 1.0249 32 1 -0.3633 0.8497 -0.5780 33 1 -0.3633 -0.9254 -0.4467 34 1 4.0128 2.0970 -0.0009 35 1 4.2039 -2.0525 0.0090 36 1 3.6880 -3.7458 1.8549 37 1 3.0375 -2.0905 1.9724 38 1 2.8573 -3.3784 4.1313 39 1 1.2802 -2.8437 3.5022 40 1 2.5006 -5.6121 3.0936 41 1 1.2094 -5.2166 4.2529 42 1 0.2516 -6.1538 2.1760 43 1 -0.2285 -4.4506 2.3707 44 1 1.0234 -3.8856 -2.0429 45 1 1.7178 -5.4934 -1.6466 46 1 0.1156 -6.0772 -3.3534 47 1 -1.0528 -4.8429 -2.7908 48 1 -1.3807 -7.3928 -5.1356 49 1 -0.0813 -6.8880 0.3510 50 1 -1.5963 -5.9429 0.3303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039192218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:49 Heat of formation + Delta-G solvation = 52.894473 kcal Electronic energy + Delta-G solvation = -31919.981845 eV Core-core repulsion = 27948.458882 eV Total energy + Delta-G solvation = -3971.522963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.60536 -41.40705 -38.80950 -38.35292 -35.51292 -35.12786 -34.17124 -33.32547 -32.46457 -30.86507 -29.73841 -28.73869 -27.17624 -26.21013 -25.35290 -24.37782 -23.69519 -22.47874 -21.62500 -21.09617 -20.56067 -18.98276 -18.82195 -17.96508 -17.82651 -17.28920 -16.75715 -16.56695 -16.28806 -15.80484 -15.63806 -15.28639 -15.15474 -14.85102 -14.61809 -14.26284 -14.22652 -14.17744 -14.10776 -13.98977 -13.64900 -13.48289 -13.23944 -13.15458 -12.93881 -12.74926 -12.54142 -12.27248 -12.19741 -12.00572 -11.92812 -11.71746 -11.69170 -11.55712 -11.41910 -11.23118 -11.06072 -10.75279 -10.58147 -10.37487 -9.99731 -9.49400 -8.85979 -7.74521 -5.20410 -0.50375 -0.09730 1.44406 1.47711 1.54504 1.56404 1.85736 2.50347 2.61542 2.96276 3.09092 3.27871 3.31249 3.35937 3.70294 3.76622 3.84947 3.86608 3.96651 4.07916 4.19785 4.27864 4.28970 4.36259 4.41452 4.43435 4.56080 4.58392 4.65590 4.69724 4.74908 4.77361 4.92747 4.93319 4.96797 5.03110 5.08221 5.15213 5.22155 5.26361 5.29753 5.35270 5.45706 5.48716 5.56556 5.64662 5.77921 5.81395 5.84830 6.31412 6.37227 6.93339 7.11721 7.14432 7.80949 8.47443 9.26886 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.003241 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.849972 B = 8637.454870 C = 9803.334441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.216 3.784 3 N -0.536 5.536 4 C 0.311 3.689 5 N -0.533 5.533 6 C 0.190 3.810 7 C -0.241 4.241 8 C 0.554 3.446 9 O -0.526 6.526 10 N -0.592 5.592 11 C 0.100 3.900 12 C -0.129 4.129 13 C -0.114 4.114 14 C -0.129 4.129 15 C 0.169 3.831 16 H 0.077 0.923 17 C -0.072 4.072 18 H 0.089 0.911 19 C -0.115 4.115 20 C 0.162 3.838 21 N -0.627 5.627 22 C -0.238 4.238 23 H 0.082 0.918 24 C -0.073 4.073 25 N -0.952 5.952 26 Si 0.983 3.017 27 H -0.288 1.288 28 H -0.293 1.293 29 H -0.265 1.265 30 C 0.135 3.865 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.192 0.808 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.064 0.936 47 H -0.030 1.030 48 H 0.245 0.755 49 H 0.032 0.968 50 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.365 14.685 18.685 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.070 3.930 3 N -0.250 5.250 4 C 0.024 3.976 5 N -0.247 5.247 6 C 0.023 3.977 7 C -0.249 4.249 8 C 0.342 3.658 9 O -0.404 6.404 10 N -0.325 5.325 11 C -0.021 4.021 12 C -0.167 4.167 13 C -0.152 4.152 14 C -0.168 4.168 15 C 0.066 3.934 16 H 0.095 0.905 17 C -0.091 4.091 18 H 0.107 0.893 19 C -0.153 4.153 20 C 0.037 3.963 21 N -0.353 5.353 22 C -0.367 4.367 23 H 0.100 0.900 24 C -0.265 4.265 25 N -0.602 5.602 26 Si 0.811 3.189 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.190 1.190 30 C 0.010 3.990 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.249 0.751 35 H 0.209 0.791 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.082 0.918 47 H -0.012 1.012 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 13.325 15.334 18.117 27.220 hybrid contribution -1.311 -1.521 -0.986 2.237 sum 12.014 13.813 17.131 25.072 Atomic orbital electron populations 1.21037 0.87058 1.05200 1.04646 1.21989 0.98219 0.86956 0.85837 1.68431 1.11129 1.29396 1.16081 1.25870 0.86377 0.98367 0.86937 1.68568 1.41357 0.99120 1.15608 1.23786 0.90088 0.97475 0.86359 1.21591 0.97145 0.95546 1.10616 1.18083 0.83276 0.83308 0.81125 1.90857 1.31575 1.78366 1.39622 1.48007 1.44863 1.11370 1.28216 1.22122 0.92001 1.02136 0.85848 1.21897 1.01391 0.96726 0.96647 1.21514 0.98527 0.96875 0.98252 1.21922 0.99005 1.02276 0.93565 1.21116 0.94389 0.82653 0.95249 0.90532 1.22415 0.96730 0.96159 0.93835 0.89308 1.23274 0.96454 0.99549 0.96056 1.21626 0.91801 0.88961 0.93959 1.44872 1.64558 1.24027 1.01853 1.19518 1.26815 0.98526 0.91891 0.89969 1.25721 1.02749 1.02321 0.95713 1.70135 1.51517 1.39049 0.99497 0.85002 0.77638 0.78899 0.77335 1.21516 1.21941 1.18988 1.21611 0.96274 0.95011 0.86114 0.88197 0.89051 0.89836 0.75098 0.79104 0.88763 0.89663 0.88089 0.92293 0.90710 0.90368 0.90690 0.92256 0.89426 0.93745 0.91757 1.01220 0.94550 0.95014 0.96885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.93 71.24 0.71 -1.92 16 2 C 0.22 4.82 6.86 42.92 0.29 5.12 16 3 N -0.54 -11.01 10.36 -187.06 -1.94 -12.95 16 4 C 0.31 5.09 12.27 180.84 2.22 7.31 16 5 N -0.53 -9.46 10.42 -198.97 -2.07 -11.53 16 6 C 0.19 3.36 9.00 85.07 0.77 4.12 16 7 C -0.24 -5.26 4.72 -19.91 -0.09 -5.35 16 8 C 0.55 14.37 6.38 86.78 0.55 14.93 16 9 O -0.53 -18.10 7.83 -3.89 -0.03 -18.14 16 10 N -0.59 -12.69 2.98 -799.22 -2.38 -15.07 16 11 C 0.10 1.31 5.46 86.36 0.47 1.78 16 12 C -0.13 -1.45 6.08 30.67 0.19 -1.27 16 13 C -0.11 -1.58 5.89 30.62 0.18 -1.40 16 14 C -0.13 -2.77 4.81 30.53 0.15 -2.62 16 15 C 0.17 4.39 2.46 44.83 0.11 4.51 16 16 H 0.08 2.00 7.90 -2.39 -0.02 1.98 16 17 C -0.07 -2.68 1.86 -9.60 -0.02 -2.70 16 18 H 0.09 3.58 5.98 -4.25 -0.03 3.55 16 19 C -0.12 -4.97 5.63 32.06 0.18 -4.79 16 20 C 0.16 8.99 5.89 86.93 0.51 9.50 16 21 N -0.63 -34.98 3.40 -691.59 -2.35 -37.33 16 22 C -0.24 -14.14 10.27 84.03 0.86 -13.28 16 23 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 24 C -0.07 -4.37 5.49 84.86 0.47 -3.91 16 25 N -0.95 -60.46 10.09 21.65 0.22 -60.24 16 26 Si 0.98 47.59 29.55 68.60 2.03 49.61 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 30 C 0.14 5.91 5.85 86.73 0.51 6.42 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.24 5.59 -2.39 -0.01 2.22 16 34 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.19 2.48 7.62 -2.91 -0.02 2.45 16 36 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.09 1.02 5.30 -2.39 -0.01 1.00 16 38 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.73 6.70 -2.39 -0.02 1.72 16 43 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.09 3.78 5.41 -19.43 -0.11 3.67 16 45 H 0.04 1.85 7.87 -2.39 -0.02 1.83 16 46 H 0.06 4.01 5.87 -2.39 -0.01 4.00 16 47 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 48 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.03 1.30 6.85 -2.38 -0.02 1.29 16 50 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -77.12 375.54 2.37 -74.75 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.85 Total: 14.43 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 8.05 Total: 16.47 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -8.52 Total: -137.13 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.03 Total: -18.14 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -77.12 2.37 -74.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039192218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.644 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds