Wall clock time and date at job start Wed Apr 1 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38804 * 120.42523 * 2 1 4 4 C 1.39497 * 118.26139 * 180.02562 * 3 2 1 5 5 C 1.48455 * 120.54709 * 179.97438 * 4 3 2 6 6 O 1.21472 * 120.00179 * 350.23226 * 5 4 3 7 7 N 1.34778 * 120.00051 * 170.23790 * 5 4 3 8 8 C 1.46935 * 120.62714 * 354.91523 * 7 5 4 9 9 C 1.52760 * 109.00686 * 233.58811 * 8 7 5 10 10 C 1.53045 * 109.38329 * 305.59002 * 9 8 7 11 11 C 1.53037 * 109.53892 * 61.24124 * 10 9 8 12 12 C 1.46923 * 120.63472 * 175.20177 * 7 5 4 13 13 H 1.09001 * 109.58742 * 246.15352 * 12 7 5 14 14 C 1.53004 * 109.58443 * 6.43147 * 12 7 5 15 15 H 1.08999 * 110.88623 * 45.24432 * 14 12 7 16 16 C 1.55153 * 111.00518 * 281.32125 * 14 12 7 17 17 C 1.54321 * 102.94303 * 206.42383 * 16 14 12 18 18 N 1.47025 * 107.27116 * 22.19082 * 17 16 14 19 19 C 1.36938 * 125.64997 * 181.01900 * 18 17 16 20 20 H 1.07999 * 120.00196 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00262 * 0.05207 * 19 18 17 22 22 N 1.31624 * 119.99659 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00364 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47215 * 59.99770 * 23 21 19 25 25 H 1.48506 * 109.47454 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47219 * 299.99599 * 23 21 19 27 27 C 1.47424 * 108.70232 * 1.06069 * 18 17 16 28 28 N 1.33099 * 118.90397 * 0.02562 * 4 3 2 29 29 C 1.31558 * 120.73619 * 359.97438 * 28 4 3 30 30 N 1.31919 * 121.91636 * 0.02562 * 29 28 4 31 31 H 1.09004 * 109.47092 * 90.00249 * 1 2 3 32 32 H 1.09002 * 109.47446 * 209.99976 * 1 2 3 33 33 H 1.08998 * 109.47252 * 330.00614 * 1 2 3 34 34 H 1.08002 * 120.86694 * 359.74383 * 3 2 1 35 35 H 1.08996 * 109.58749 * 353.42124 * 8 7 5 36 36 H 1.08996 * 109.58591 * 113.84761 * 8 7 5 37 37 H 1.08997 * 109.56637 * 185.55429 * 9 8 7 38 38 H 1.08999 * 109.36259 * 65.50085 * 9 8 7 39 39 H 1.09000 * 109.45854 * 301.21735 * 10 9 8 40 40 H 1.08996 * 109.45789 * 181.26186 * 10 9 8 41 41 H 1.09002 * 109.49566 * 178.68404 * 11 10 9 42 42 H 1.08995 * 109.52582 * 58.60061 * 11 10 9 43 43 H 1.09004 * 110.72175 * 324.78530 * 16 14 12 44 44 H 1.08997 * 110.72157 * 88.06250 * 16 14 12 45 45 H 1.09006 * 109.88539 * 262.77762 * 17 16 14 46 46 H 1.09000 * 110.01691 * 141.67953 * 17 16 14 47 47 H 0.97001 * 119.99793 * 180.02562 * 22 21 19 48 48 H 1.08992 * 110.37018 * 217.02841 * 27 18 17 49 49 H 1.09002 * 110.36749 * 94.70738 * 27 18 17 50 50 H 1.07999 * 119.04194 * 179.97438 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4061 2.3933 -0.0011 6 8 3.8620 3.4646 -0.1796 7 7 5.7383 2.3388 0.1962 8 6 6.3950 1.0657 0.5234 9 6 7.2160 1.2429 1.7993 10 6 8.1781 2.4204 1.6249 11 6 7.3789 3.7025 1.3808 12 6 6.5605 3.5521 0.0946 13 1 7.2333 3.4672 -0.7588 14 6 5.6546 4.7719 -0.0860 15 1 4.8151 4.7387 0.6084 16 6 5.1603 4.8853 -1.5523 17 6 4.8947 6.3971 -1.7116 18 7 5.6927 7.0905 -0.6898 19 6 5.7225 8.4439 -0.4831 20 1 6.3447 8.8575 0.2967 21 6 4.9526 9.2842 -1.2755 22 7 4.1942 8.7802 -2.2260 23 14 4.9927 11.1302 -0.9931 24 1 6.3785 11.6298 -1.1813 25 1 4.0897 11.7993 -1.9638 26 1 4.5422 11.4293 0.3900 27 6 6.4563 6.0876 0.0746 28 7 4.2028 -0.0444 -0.0016 29 6 3.4954 -1.1537 -0.0016 30 7 2.1763 -1.1397 -0.0010 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.6911 2.1442 -0.0041 35 1 5.6404 0.2950 0.6802 36 1 7.0540 0.7739 -0.2943 37 1 7.7850 0.3344 1.9964 38 1 6.5458 1.4416 2.6357 39 1 8.8317 2.2321 0.7732 40 1 8.7802 2.5339 2.5263 41 1 8.0638 4.5444 1.2799 42 1 6.7072 3.8786 2.2208 43 1 5.9328 4.5543 -2.2465 44 1 4.2422 4.3154 -1.6950 45 1 3.8357 6.6056 -1.5592 46 1 5.1979 6.7266 -2.7053 47 1 3.6565 9.3674 -2.7799 48 1 6.5112 6.3725 1.1252 49 1 7.4575 5.9750 -0.3415 50 1 4.0097 -2.1034 -0.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039199535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:57 Heat of formation + Delta-G solvation = 84.037932 kcal Electronic energy + Delta-G solvation = -31515.030785 eV Core-core repulsion = 27544.858303 eV Total energy + Delta-G solvation = -3970.172481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.69772 -40.31996 -37.46728 -36.87713 -35.02127 -33.20153 -32.80361 -32.46330 -30.95773 -29.17188 -28.82870 -27.16131 -25.98430 -24.56345 -24.36298 -23.65555 -22.61428 -21.14430 -19.78948 -19.65420 -19.59337 -17.96072 -17.04054 -16.67865 -16.03025 -15.90995 -15.74940 -15.63521 -14.85508 -14.80338 -14.49505 -14.19556 -14.03603 -13.72641 -13.56342 -13.40195 -13.25027 -13.06763 -12.87081 -12.70016 -12.12362 -12.04306 -11.93014 -11.62273 -11.45450 -11.12921 -10.99287 -10.87068 -10.83193 -10.74403 -10.63541 -10.56129 -10.06180 -9.94877 -9.90149 -9.70816 -9.53808 -9.41443 -9.26866 -8.74454 -8.44026 -8.28941 -6.64047 -5.55715 -2.88455 0.27846 0.56155 2.68625 2.83439 3.48246 3.51190 3.51713 3.53524 3.64953 3.65792 4.09046 4.53907 4.61545 4.64759 4.81294 4.86373 4.93543 5.00371 5.11380 5.16787 5.20223 5.34606 5.40886 5.43409 5.51471 5.58083 5.63272 5.70374 5.76898 5.84883 5.87814 5.96916 6.07753 6.08781 6.11876 6.18487 6.28814 6.35279 6.42570 6.53182 6.57695 6.68987 6.81436 6.95983 7.10237 7.34033 7.45038 7.63200 7.72369 7.90669 8.03587 8.22978 8.43907 9.38125 9.99253 10.67849 11.55416 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.003266 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.536281 B = 8570.414257 C =10389.504731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.179 3.821 3 C -0.170 4.170 4 C 0.143 3.857 5 C 0.547 3.453 6 O -0.482 6.482 7 N -0.581 5.581 8 C 0.066 3.934 9 C -0.134 4.134 10 C -0.122 4.122 11 C -0.130 4.130 12 C 0.157 3.843 13 H 0.072 0.928 14 C -0.096 4.096 15 H 0.106 0.894 16 C -0.133 4.133 17 C 0.182 3.818 18 N -0.605 5.605 19 C -0.225 4.225 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.139 3.861 28 N -0.495 5.495 29 C 0.290 3.710 30 N -0.513 5.513 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.250 0.750 48 H 0.033 0.967 49 H 0.011 0.989 50 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -24.247 6.864 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.032 3.968 3 C -0.193 4.193 4 C -0.003 4.003 5 C 0.333 3.667 6 O -0.355 6.355 7 N -0.313 5.313 8 C -0.057 4.057 9 C -0.173 4.173 10 C -0.159 4.159 11 C -0.168 4.168 12 C 0.055 3.945 13 H 0.090 0.910 14 C -0.115 4.115 15 H 0.123 0.877 16 C -0.171 4.171 17 C 0.058 3.942 18 N -0.331 5.331 19 C -0.353 4.353 20 H 0.093 0.907 21 C -0.207 4.207 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.012 3.988 28 N -0.213 5.213 29 C 0.003 3.997 30 N -0.229 5.229 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.180 0.820 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.028 0.972 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.327 -24.279 6.649 25.175 hybrid contribution -0.056 1.690 0.035 1.691 sum -0.383 -22.589 6.683 23.560 Atomic orbital electron populations 1.20840 0.87179 1.04433 1.04138 1.21867 0.97977 0.87735 0.89223 1.22867 0.94632 1.01575 1.00218 1.22041 0.92361 0.92723 0.93174 1.17894 0.82473 0.86695 0.79678 1.90933 1.71298 1.26645 1.46660 1.47885 1.05731 1.09991 1.67690 1.22988 0.99450 0.87092 0.96163 1.21872 0.98374 0.98641 0.98372 1.21565 0.97747 0.94955 1.01653 1.21994 0.99043 0.97914 0.97850 1.21453 0.92032 0.83774 0.97254 0.91036 1.22844 0.97405 0.91329 0.99965 0.87663 1.23231 1.00021 0.99879 0.93977 1.21078 0.95708 0.85349 0.92106 1.44472 1.50012 1.01611 1.36991 1.19014 1.21729 0.80713 1.13892 0.90741 1.24792 0.99519 0.97894 0.98456 1.70000 1.31307 1.32982 1.22596 0.86230 0.77189 0.85362 0.77156 1.21328 1.21687 1.21294 1.21629 0.93447 0.88862 0.94857 1.68308 1.39365 0.98911 1.14677 1.25138 0.86818 0.97115 0.90670 1.68209 1.10436 1.30501 1.13713 0.89232 0.89696 0.89608 0.81994 0.83486 0.92010 0.91116 0.92099 0.91919 0.91998 0.90124 0.91501 0.94385 0.90067 0.93880 0.94752 0.93938 0.94853 0.97171 0.78218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.22 36.01 0.37 -0.31 16 2 C 0.18 1.69 6.83 -82.24 -0.56 1.12 16 3 C -0.17 -1.88 9.40 -38.90 -0.37 -2.24 16 4 C 0.14 1.77 6.63 -82.64 -0.55 1.22 16 5 C 0.55 8.20 7.41 -12.05 -0.09 8.11 16 6 O -0.48 -8.74 9.38 5.39 0.05 -8.69 16 7 N -0.58 -7.96 2.98 -166.36 -0.50 -8.45 16 8 C 0.07 0.70 5.96 -3.93 -0.02 0.67 16 9 C -0.13 -1.26 6.06 -26.83 -0.16 -1.43 16 10 C -0.12 -1.24 5.89 -26.69 -0.16 -1.39 16 11 C -0.13 -1.68 4.85 -26.61 -0.13 -1.81 16 12 C 0.16 2.38 2.59 -67.60 -0.17 2.21 16 13 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 14 C -0.10 -1.86 1.92 -88.47 -0.17 -2.03 16 15 H 0.11 2.25 5.93 -52.12 -0.31 1.94 16 16 C -0.13 -2.87 5.59 -24.90 -0.14 -3.01 16 17 C 0.18 4.89 5.38 -3.06 -0.02 4.87 16 18 N -0.60 -16.67 3.39 -170.07 -0.58 -17.25 16 19 C -0.22 -6.65 10.28 -15.06 -0.15 -6.80 16 20 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -28.58 10.31 55.49 0.57 -28.01 16 23 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.14 3.08 5.34 -2.53 -0.01 3.06 16 28 N -0.50 -5.16 6.26 -11.14 -0.07 -5.23 16 29 C 0.29 2.52 12.28 -92.25 -1.13 1.38 16 30 N -0.51 -4.97 10.36 -10.81 -0.11 -5.08 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.16 1.74 7.77 -52.49 -0.41 1.33 16 35 H 0.15 1.50 3.86 -87.60 -0.34 1.16 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.06 7.15 -51.93 -0.37 0.69 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.78 7.83 -51.93 -0.41 0.37 16 44 H 0.08 1.75 5.55 -52.07 -0.29 1.46 16 45 H 0.04 1.28 7.38 -51.93 -0.38 0.90 16 46 H 0.03 1.01 7.50 -51.93 -0.39 0.62 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 49 H 0.01 0.23 7.81 -51.93 -0.41 -0.18 16 50 H 0.20 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -34.58 379.85 -11.40 -45.98 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.90 Total: -0.25 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -3.57 Total: 3.22 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -0.68 Total: -64.02 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.05 Total: -8.69 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.58 -11.40 -45.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.016 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds