Wall clock time and date at job start Wed Apr 1 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38804 * 120.42523 * 2 1 4 4 C 1.39497 * 118.26139 * 180.02562 * 3 2 1 5 5 C 1.48455 * 120.54709 * 179.97438 * 4 3 2 6 6 O 1.21472 * 120.00179 * 350.23226 * 5 4 3 7 7 N 1.34778 * 120.00051 * 170.23790 * 5 4 3 8 8 C 1.46935 * 120.62714 * 354.91523 * 7 5 4 9 9 C 1.52760 * 109.00686 * 233.58811 * 8 7 5 10 10 C 1.53045 * 109.38329 * 305.59002 * 9 8 7 11 11 C 1.53037 * 109.53892 * 61.24124 * 10 9 8 12 12 C 1.46923 * 120.63472 * 175.20177 * 7 5 4 13 13 H 1.09001 * 109.58742 * 246.15352 * 12 7 5 14 14 C 1.53004 * 109.58443 * 6.43147 * 12 7 5 15 15 H 1.08999 * 110.88623 * 45.24432 * 14 12 7 16 16 C 1.55153 * 111.00518 * 281.32125 * 14 12 7 17 17 C 1.54321 * 102.94303 * 206.42383 * 16 14 12 18 18 N 1.47025 * 107.27116 * 22.19082 * 17 16 14 19 19 C 1.36938 * 125.64997 * 181.01900 * 18 17 16 20 20 H 1.07999 * 120.00196 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00262 * 0.05207 * 19 18 17 22 22 N 1.31624 * 119.99659 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00364 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47215 * 59.99770 * 23 21 19 25 25 H 1.48506 * 109.47454 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47219 * 299.99599 * 23 21 19 27 27 C 1.47424 * 108.70232 * 1.06069 * 18 17 16 28 28 N 1.33099 * 118.90397 * 0.02562 * 4 3 2 29 29 C 1.31558 * 120.73619 * 359.97438 * 28 4 3 30 30 N 1.31919 * 121.91636 * 0.02562 * 29 28 4 31 31 H 1.09004 * 109.47092 * 90.00249 * 1 2 3 32 32 H 1.09002 * 109.47446 * 209.99976 * 1 2 3 33 33 H 1.08998 * 109.47252 * 330.00614 * 1 2 3 34 34 H 1.08002 * 120.86694 * 359.74383 * 3 2 1 35 35 H 1.08996 * 109.58749 * 353.42124 * 8 7 5 36 36 H 1.08996 * 109.58591 * 113.84761 * 8 7 5 37 37 H 1.08997 * 109.56637 * 185.55429 * 9 8 7 38 38 H 1.08999 * 109.36259 * 65.50085 * 9 8 7 39 39 H 1.09000 * 109.45854 * 301.21735 * 10 9 8 40 40 H 1.08996 * 109.45789 * 181.26186 * 10 9 8 41 41 H 1.09002 * 109.49566 * 178.68404 * 11 10 9 42 42 H 1.08995 * 109.52582 * 58.60061 * 11 10 9 43 43 H 1.09004 * 110.72175 * 324.78530 * 16 14 12 44 44 H 1.08997 * 110.72157 * 88.06250 * 16 14 12 45 45 H 1.09006 * 109.88539 * 262.77762 * 17 16 14 46 46 H 1.09000 * 110.01691 * 141.67953 * 17 16 14 47 47 H 0.97001 * 119.99793 * 180.02562 * 22 21 19 48 48 H 1.08992 * 110.37018 * 217.02841 * 27 18 17 49 49 H 1.09002 * 110.36749 * 94.70738 * 27 18 17 50 50 H 1.07999 * 119.04194 * 179.97438 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1442 -0.0005 5 6 4.4061 2.3933 -0.0011 6 8 3.8620 3.4646 -0.1796 7 7 5.7383 2.3388 0.1962 8 6 6.3950 1.0657 0.5234 9 6 7.2160 1.2429 1.7993 10 6 8.1781 2.4204 1.6249 11 6 7.3789 3.7025 1.3808 12 6 6.5605 3.5521 0.0946 13 1 7.2333 3.4672 -0.7588 14 6 5.6546 4.7719 -0.0860 15 1 4.8151 4.7387 0.6084 16 6 5.1603 4.8853 -1.5523 17 6 4.8947 6.3971 -1.7116 18 7 5.6927 7.0905 -0.6898 19 6 5.7225 8.4439 -0.4831 20 1 6.3447 8.8575 0.2967 21 6 4.9526 9.2842 -1.2755 22 7 4.1942 8.7802 -2.2260 23 14 4.9927 11.1302 -0.9931 24 1 6.3785 11.6298 -1.1813 25 1 4.0897 11.7993 -1.9638 26 1 4.5422 11.4293 0.3900 27 6 6.4563 6.0876 0.0746 28 7 4.2028 -0.0444 -0.0016 29 6 3.4954 -1.1537 -0.0016 30 7 2.1763 -1.1397 -0.0010 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.6911 2.1442 -0.0041 35 1 5.6404 0.2950 0.6802 36 1 7.0540 0.7739 -0.2943 37 1 7.7850 0.3344 1.9964 38 1 6.5458 1.4416 2.6357 39 1 8.8317 2.2321 0.7732 40 1 8.7802 2.5339 2.5263 41 1 8.0638 4.5444 1.2799 42 1 6.7072 3.8786 2.2208 43 1 5.9328 4.5543 -2.2465 44 1 4.2422 4.3154 -1.6950 45 1 3.8357 6.6056 -1.5592 46 1 5.1979 6.7266 -2.7053 47 1 3.6565 9.3674 -2.7799 48 1 6.5112 6.3725 1.1252 49 1 7.4575 5.9750 -0.3415 50 1 4.0097 -2.1034 -0.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039199535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:56 Heat of formation + Delta-G solvation = 63.838029 kcal Electronic energy + Delta-G solvation = -31515.906718 eV Core-core repulsion = 27544.858303 eV Total energy + Delta-G solvation = -3971.048415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.59236 -41.41875 -38.84190 -38.36057 -35.89781 -34.77200 -33.86302 -33.49061 -32.51275 -30.90073 -29.68909 -28.74192 -27.27142 -26.20395 -25.38409 -24.50004 -23.88354 -22.31860 -21.62003 -21.14456 -20.65759 -18.94939 -18.74531 -17.92215 -17.16643 -16.93219 -16.87347 -16.57094 -16.49934 -16.01943 -15.76721 -15.63382 -15.12507 -15.00228 -14.77884 -14.29702 -14.23335 -14.02044 -14.00741 -13.80814 -13.70585 -13.56924 -13.21889 -13.19946 -12.85693 -12.71570 -12.40170 -12.23405 -12.05432 -12.00625 -11.88361 -11.74914 -11.71393 -11.53112 -11.42801 -11.21972 -11.15254 -10.75824 -10.63739 -10.43664 -9.76512 -9.49441 -8.87461 -7.83095 -5.19985 -0.60710 -0.17140 1.42605 1.47953 1.54118 1.66092 1.78128 2.49706 2.67654 2.80299 3.04006 3.25863 3.33852 3.59459 3.69049 3.79022 3.89448 3.93742 4.04128 4.16476 4.21852 4.26958 4.34539 4.36732 4.46272 4.51474 4.60916 4.68223 4.71580 4.74444 4.80841 4.86473 4.92027 4.95589 5.00207 5.07915 5.11841 5.17472 5.19641 5.22215 5.28661 5.43593 5.45022 5.50071 5.59445 5.73496 5.74847 5.78012 5.86047 6.19845 6.37672 6.86171 7.08872 7.10625 7.78794 8.46104 9.27230 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.003266 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.536281 B = 8570.414257 C =10389.504731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.184 3.816 3 C -0.183 4.183 4 C 0.129 3.871 5 C 0.542 3.458 6 O -0.528 6.528 7 N -0.579 5.579 8 C 0.062 3.938 9 C -0.129 4.129 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.163 3.837 13 H 0.076 0.924 14 C -0.075 4.075 15 H 0.085 0.915 16 C -0.117 4.117 17 C 0.195 3.805 18 N -0.628 5.628 19 C -0.245 4.245 20 H 0.084 0.916 21 C -0.072 4.072 22 N -0.954 5.954 23 Si 0.984 3.016 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.136 3.864 28 N -0.496 5.496 29 C 0.294 3.706 30 N -0.520 5.520 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.082 0.918 45 H -0.001 1.001 46 H -0.002 1.002 47 H 0.245 0.755 48 H 0.038 0.962 49 H 0.024 0.976 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 -26.831 8.226 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.036 3.964 3 C -0.206 4.206 4 C -0.017 4.017 5 C 0.329 3.671 6 O -0.405 6.405 7 N -0.310 5.310 8 C -0.059 4.059 9 C -0.167 4.167 10 C -0.154 4.154 11 C -0.164 4.164 12 C 0.059 3.941 13 H 0.094 0.906 14 C -0.094 4.094 15 H 0.103 0.897 16 C -0.154 4.154 17 C 0.070 3.930 18 N -0.354 5.354 19 C -0.374 4.374 20 H 0.102 0.898 21 C -0.265 4.265 22 N -0.603 5.603 23 Si 0.812 3.188 24 H -0.200 1.200 25 H -0.220 1.220 26 H -0.202 1.202 27 C 0.011 3.989 28 N -0.214 5.214 29 C 0.008 3.992 30 N -0.235 5.235 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.042 0.958 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.076 -26.918 8.047 28.116 hybrid contribution -0.503 2.391 -0.377 2.473 sum 0.573 -24.527 7.670 25.704 Atomic orbital electron populations 1.20953 0.85024 1.05442 1.05056 1.22298 0.99356 0.86987 0.87732 1.22921 0.94385 1.02170 1.01100 1.21661 0.92481 0.92494 0.95016 1.18315 0.82887 0.87202 0.78718 1.90897 1.72130 1.28509 1.48966 1.48025 1.05425 1.10606 1.66906 1.23242 0.99876 0.85533 0.97222 1.21863 0.98091 0.99589 0.97166 1.21549 0.97640 0.93361 1.02824 1.21954 0.98749 0.99803 0.95944 1.21270 0.91319 0.82598 0.98864 0.90593 1.22575 0.96964 0.92259 0.97636 0.89693 1.23058 1.00647 0.95745 0.95983 1.20770 0.93104 0.88794 0.90361 1.44819 1.50661 1.02137 1.37811 1.19493 1.21805 0.82072 1.14069 0.89837 1.25770 0.99335 1.03026 0.98337 1.70261 1.32097 1.34412 1.23548 0.85073 0.77501 0.79076 0.77187 1.19982 1.21973 1.20162 1.21822 0.93671 0.88993 0.94412 1.68260 1.39422 0.98564 1.15119 1.25947 0.86734 0.97805 0.88757 1.68335 1.10982 1.30290 1.13898 0.88178 0.88595 0.88687 0.82714 0.82734 0.90975 0.88190 0.92897 0.90980 0.90389 0.90401 0.92542 0.93289 0.89995 0.98227 0.98410 0.94564 0.94329 0.95823 0.74321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.22 71.24 0.73 -0.44 16 2 C 0.18 3.23 6.83 42.64 0.29 3.52 16 3 C -0.18 -4.04 9.40 22.71 0.21 -3.83 16 4 C 0.13 3.14 6.63 41.98 0.28 3.42 16 5 C 0.54 16.44 7.41 86.97 0.64 17.09 16 6 O -0.53 -20.17 9.38 -3.63 -0.03 -20.20 16 7 N -0.58 -15.32 2.98 -798.54 -2.38 -17.70 16 8 C 0.06 1.16 5.96 86.22 0.51 1.67 16 9 C -0.13 -2.00 6.06 30.53 0.19 -1.81 16 10 C -0.12 -1.99 5.89 30.62 0.18 -1.81 16 11 C -0.13 -3.08 4.85 30.67 0.15 -2.93 16 12 C 0.16 4.80 2.59 44.98 0.12 4.91 16 13 H 0.08 2.21 7.85 -2.39 -0.02 2.19 16 14 C -0.07 -2.98 1.92 -9.40 -0.02 -3.00 16 15 H 0.09 3.80 5.93 -6.57 -0.04 3.76 16 16 C -0.12 -5.24 5.59 31.78 0.18 -5.06 16 17 C 0.19 11.13 5.38 86.73 0.47 11.60 16 18 N -0.63 -36.00 3.39 -691.99 -2.35 -38.35 16 19 C -0.25 -14.91 10.28 84.03 0.86 -14.04 16 20 H 0.08 4.77 7.83 -2.91 -0.02 4.75 16 21 C -0.07 -4.42 5.49 84.86 0.47 -3.95 16 22 N -0.95 -62.09 10.31 21.65 0.22 -61.87 16 23 Si 0.98 48.46 29.55 68.60 2.03 50.49 16 24 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 27 C 0.14 6.15 5.34 86.85 0.46 6.61 16 28 N -0.50 -9.37 6.26 -189.16 -1.18 -10.55 16 29 C 0.29 4.28 12.28 180.92 2.22 6.50 16 30 N -0.52 -8.88 10.36 -188.10 -1.95 -10.83 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.86 8.10 -2.39 -0.02 0.85 16 34 H 0.16 3.56 7.77 -2.91 -0.02 3.53 16 35 H 0.16 2.73 3.86 -72.81 -0.28 2.44 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.94 7.15 -2.39 -0.02 1.92 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 2.06 7.83 -2.38 -0.02 2.04 16 44 H 0.08 3.73 5.55 -5.82 -0.03 3.70 16 45 H 0.00 -0.04 7.38 -2.38 -0.02 -0.05 16 46 H 0.00 -0.15 7.50 -2.39 -0.02 -0.16 16 47 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 48 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 49 H 0.02 1.03 7.81 -2.39 -0.02 1.01 16 50 H 0.24 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -79.46 379.85 2.92 -76.54 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.63 Total: 14.03 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 7.94 Total: 18.45 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -7.64 Total: -139.30 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.03 Total: -20.20 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -79.46 2.92 -76.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.373 kcal (2) G-P(sol) polarization free energy of solvation -79.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds