Wall clock time and date at job start Wed Apr 1 2020 03:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38805 * 120.42727 * 2 1 4 4 C 1.39494 * 118.26142 * 180.25712 * 3 2 1 5 5 C 1.48460 * 120.54635 * 179.75832 * 4 3 2 6 6 O 1.21481 * 119.99656 * 10.47639 * 5 4 3 7 7 N 1.34771 * 119.99728 * 190.46881 * 5 4 3 8 8 C 1.46930 * 120.63465 * 8.17819 * 7 5 4 9 9 C 1.53190 * 108.77311 * 233.62880 * 8 7 5 10 10 C 1.53038 * 109.31283 * 305.35909 * 9 8 7 11 11 C 1.53037 * 109.53964 * 61.36787 * 10 9 8 12 12 C 1.46923 * 120.63115 * 188.19284 * 7 5 4 13 13 H 1.08996 * 109.70848 * 246.23139 * 12 7 5 14 14 C 1.53005 * 109.58515 * 6.58803 * 12 7 5 15 15 H 1.08996 * 110.88676 * 302.90299 * 14 12 7 16 16 C 1.55147 * 111.03831 * 66.81220 * 14 12 7 17 17 C 1.54334 * 103.02330 * 153.39547 * 16 14 12 18 18 N 1.47022 * 107.26451 * 338.14285 * 17 16 14 19 19 C 1.36934 * 125.64804 * 178.85089 * 18 17 16 20 20 H 1.08000 * 119.99869 * 175.84948 * 19 18 17 21 21 C 1.38813 * 120.00235 * 355.84978 * 19 18 17 22 22 N 1.31625 * 119.99795 * 216.36358 * 21 19 18 23 23 Si 1.86800 * 120.00162 * 36.35460 * 21 19 18 24 24 H 1.48497 * 109.47411 * 266.97671 * 23 21 19 25 25 H 1.48498 * 109.47137 * 146.97105 * 23 21 19 26 26 H 1.48500 * 109.46962 * 26.97396 * 23 21 19 27 27 C 1.47427 * 108.70345 * 358.58123 * 18 17 16 28 28 N 1.33096 * 118.90138 * 359.49157 * 4 3 2 29 29 C 1.31553 * 120.74178 * 0.26960 * 28 4 3 30 30 N 1.31919 * 121.91311 * 359.97438 * 29 28 4 31 31 H 1.08999 * 109.47141 * 270.25470 * 1 2 3 32 32 H 1.08996 * 109.47299 * 30.25827 * 1 2 3 33 33 H 1.09006 * 109.46912 * 150.25418 * 1 2 3 34 34 H 1.08006 * 120.86797 * 0.04235 * 3 2 1 35 35 H 1.08997 * 109.58827 * 113.83464 * 8 7 5 36 36 H 1.09009 * 109.69844 * 353.48065 * 8 7 5 37 37 H 1.09003 * 109.49727 * 185.40887 * 9 8 7 38 38 H 1.08996 * 109.50040 * 65.31024 * 9 8 7 39 39 H 1.09005 * 109.46060 * 301.34878 * 10 9 8 40 40 H 1.09001 * 109.46124 * 181.38672 * 10 9 8 41 41 H 1.08996 * 109.50233 * 178.68060 * 11 10 9 42 42 H 1.09004 * 109.52546 * 58.59745 * 11 10 9 43 43 H 1.09007 * 110.72261 * 271.95211 * 16 14 12 44 44 H 1.09001 * 110.72087 * 35.04989 * 16 14 12 45 45 H 1.08996 * 109.99371 * 218.66255 * 17 16 14 46 46 H 1.09007 * 109.77804 * 97.49269 * 17 16 14 47 47 H 0.96999 * 119.99848 * 5.00034 * 22 21 19 48 48 H 1.08995 * 110.36313 * 143.19575 * 27 18 17 49 49 H 1.09000 * 110.36901 * 265.52080 * 27 18 17 50 50 H 1.07999 * 119.04657 * 179.97438 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0055 5 6 4.4062 2.3933 -0.0112 6 8 3.8647 3.4638 0.1802 7 7 5.7352 2.3396 -0.2285 8 6 6.3768 1.0825 -0.6370 9 6 7.5276 0.7801 0.3279 10 6 8.4744 1.9813 0.3786 11 6 7.7189 3.2070 0.8972 12 6 6.5701 3.5369 -0.0612 13 1 6.9753 3.8403 -1.0264 14 6 5.7267 4.6730 0.5210 15 1 4.8657 4.8824 -0.1137 16 6 5.2826 4.3498 1.9720 17 6 5.0952 5.7480 2.5979 18 7 5.8884 6.6936 1.7990 19 6 5.9734 8.0435 2.0125 20 1 6.6378 8.6448 1.4095 21 6 5.2058 8.6392 3.0038 22 7 4.7035 9.8410 2.8143 23 14 4.8854 7.7352 4.6068 24 1 3.6082 6.9845 4.5050 25 1 4.7962 8.7155 5.7187 26 1 5.9972 6.7869 4.8710 27 6 6.5823 5.9468 0.7340 28 7 4.2027 -0.0445 -0.0002 29 6 3.4955 -1.1537 0.0048 30 7 2.1764 -1.1397 0.0052 31 1 -0.3633 0.0046 1.0276 32 1 -0.3634 0.8876 -0.5178 33 1 -0.3633 -0.8923 -0.5099 34 1 1.6912 2.1442 0.0007 35 1 6.7661 1.1832 -1.6501 36 1 5.6495 0.2711 -0.6040 37 1 8.0722 -0.0980 -0.0193 38 1 7.1272 0.5902 1.3236 39 1 8.8553 2.1861 -0.6220 40 1 9.3074 1.7593 1.0457 41 1 8.3995 4.0563 0.9553 42 1 7.3165 2.9948 1.8878 43 1 4.3441 3.7952 1.9737 44 1 6.0585 3.7937 2.4980 45 1 5.4494 5.7454 3.6287 46 1 4.0423 6.0283 2.5663 47 1 4.8081 10.2805 1.9559 48 1 6.6183 6.5371 -0.1815 49 1 7.5893 5.6783 1.0532 50 1 4.0097 -2.1034 0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039199538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:01 Heat of formation + Delta-G solvation = 90.934228 kcal Electronic energy + Delta-G solvation = -31839.800965 eV Core-core repulsion = 27869.927529 eV Total energy + Delta-G solvation = -3969.873435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.81499 -40.50372 -37.69507 -37.06911 -35.10857 -33.30539 -32.85154 -32.61378 -31.27156 -29.21990 -28.89497 -27.86565 -26.15047 -24.64785 -24.08831 -23.72810 -22.74943 -21.12824 -20.78169 -19.82164 -19.19154 -17.91825 -17.27702 -17.15927 -16.20042 -15.89962 -15.80572 -15.52494 -15.30664 -15.09728 -14.77851 -14.45819 -14.07570 -13.93229 -13.50228 -13.48592 -13.40776 -13.10084 -13.04132 -12.79793 -12.72319 -12.48419 -12.04912 -11.79279 -11.56519 -11.19999 -11.03126 -10.94229 -10.90180 -10.74683 -10.67573 -10.56062 -10.28014 -10.14300 -9.97901 -9.88812 -9.55842 -9.38106 -9.08363 -8.81892 -8.45251 -8.15111 -6.90363 -6.27972 -2.95759 0.17987 0.47901 2.54739 2.74160 3.41483 3.56381 3.57154 3.58114 3.62747 3.78505 3.99723 4.44058 4.56310 4.74372 4.76747 4.83425 4.86890 4.94027 5.04647 5.09947 5.11030 5.14480 5.27005 5.33118 5.37951 5.39775 5.45625 5.55336 5.63557 5.75842 5.80103 5.84522 5.86345 5.87843 5.96040 6.03826 6.13146 6.23744 6.33964 6.36045 6.46043 6.52096 6.62461 6.65998 6.73070 6.87751 7.08019 7.19201 7.35096 7.54440 7.89561 8.07985 8.46920 9.15932 9.77213 10.46717 11.20614 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011978 B = 0.003707 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.115689 B = 7550.722539 C = 9150.968825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.181 3.819 3 C -0.170 4.170 4 C 0.142 3.858 5 C 0.557 3.443 6 O -0.491 6.491 7 N -0.580 5.580 8 C 0.053 3.947 9 C -0.125 4.125 10 C -0.122 4.122 11 C -0.138 4.138 12 C 0.158 3.842 13 H 0.074 0.926 14 C -0.105 4.105 15 H 0.117 0.883 16 C -0.123 4.123 17 C 0.114 3.886 18 N -0.606 5.606 19 C -0.338 4.338 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.904 5.904 23 Si 1.043 2.957 24 H -0.295 1.295 25 H -0.301 1.301 26 H -0.291 1.291 27 C 0.139 3.861 28 N -0.493 5.493 29 C 0.292 3.708 30 N -0.512 5.512 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.054 0.946 36 H 0.158 0.842 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.027 0.973 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.039 0.961 49 H 0.018 0.982 50 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -27.084 -9.046 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.034 3.966 3 C -0.193 4.193 4 C -0.004 4.004 5 C 0.342 3.658 6 O -0.365 6.365 7 N -0.311 5.311 8 C -0.069 4.069 9 C -0.163 4.163 10 C -0.160 4.160 11 C -0.175 4.175 12 C 0.056 3.944 13 H 0.092 0.908 14 C -0.124 4.124 15 H 0.135 0.865 16 C -0.160 4.160 17 C -0.011 4.011 18 N -0.333 5.333 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.543 5.543 23 Si 0.875 3.125 24 H -0.223 1.223 25 H -0.229 1.229 26 H -0.219 1.219 27 C 0.012 3.988 28 N -0.210 5.210 29 C 0.004 3.996 30 N -0.227 5.227 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.180 0.820 35 H 0.072 0.928 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.035 0.965 50 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.757 -27.038 -7.443 28.099 hybrid contribution 0.744 0.498 -1.334 1.606 sum -1.013 -26.540 -8.777 27.972 Atomic orbital electron populations 1.20850 0.87109 1.04483 1.04203 1.21885 0.98021 0.87702 0.89021 1.22864 0.94580 1.01603 1.00223 1.21992 0.92338 0.92658 0.93403 1.17851 0.82411 0.86643 0.78937 1.90869 1.71072 1.27131 1.47472 1.47906 1.05737 1.11682 1.65813 1.23249 0.98623 0.88480 0.96564 1.21790 0.96360 0.97817 1.00365 1.21579 0.97955 0.95192 1.01239 1.22160 0.97121 0.98412 0.99855 1.21282 0.90599 0.83921 0.98626 0.90771 1.22978 0.98687 0.92992 0.97715 0.86515 1.22949 1.00752 0.97216 0.95133 1.21583 0.95996 0.88951 0.94543 1.44747 1.53268 1.03723 1.31539 1.19903 1.25603 0.80513 1.20454 0.90435 1.25496 0.95073 0.97621 1.03026 1.70887 1.37957 1.17801 1.27648 0.84260 0.75737 0.74304 0.78170 1.22293 1.22866 1.21876 1.21673 0.93690 0.91219 0.92240 1.68077 1.39120 0.98931 1.14861 1.25157 0.86825 0.97080 0.90490 1.68223 1.10391 1.30477 1.13611 0.89163 0.89593 0.89625 0.82001 0.92762 0.82629 0.91270 0.91712 0.92102 0.91962 0.89984 0.90688 0.90641 0.92552 0.95549 0.94601 0.92594 0.94258 0.96493 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.22 36.01 0.37 -0.25 16 2 C 0.18 1.59 6.83 -82.23 -0.56 1.03 16 3 C -0.17 -1.75 9.41 -38.90 -0.37 -2.11 16 4 C 0.14 1.65 6.62 -82.64 -0.55 1.11 16 5 C 0.56 7.85 6.75 -12.05 -0.08 7.77 16 6 O -0.49 -8.43 10.20 5.38 0.05 -8.38 16 7 N -0.58 -7.46 2.95 -166.09 -0.49 -7.95 16 8 C 0.05 0.53 6.19 -3.71 -0.02 0.51 16 9 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 10 C -0.12 -1.23 5.88 -26.69 -0.16 -1.38 16 11 C -0.14 -1.79 4.72 -26.61 -0.13 -1.92 16 12 C 0.16 2.25 2.82 -67.60 -0.19 2.06 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.10 -1.93 2.13 -88.47 -0.19 -2.12 16 15 H 0.12 2.40 5.81 -52.46 -0.30 2.09 16 16 C -0.12 -2.42 5.30 -24.90 -0.13 -2.55 16 17 C 0.11 2.80 4.92 -3.06 -0.02 2.78 16 18 N -0.61 -16.13 3.37 -170.06 -0.57 -16.70 16 19 C -0.34 -10.25 10.36 -15.06 -0.16 -10.41 16 20 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 21 C -0.01 -0.32 5.40 -17.43 -0.09 -0.42 16 22 N -0.90 -29.26 13.70 55.49 0.76 -28.50 16 23 Si 1.04 28.13 24.86 -169.99 -4.23 23.90 16 24 H -0.30 -7.71 6.86 56.52 0.39 -7.33 16 25 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 26 H -0.29 -7.53 6.24 56.52 0.35 -7.18 16 27 C 0.14 2.99 6.61 -2.52 -0.02 2.98 16 28 N -0.49 -4.80 6.33 -11.14 -0.07 -4.87 16 29 C 0.29 2.35 12.28 -92.25 -1.13 1.22 16 30 N -0.51 -4.65 10.36 -10.81 -0.11 -4.76 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.16 1.60 7.77 -52.48 -0.41 1.19 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.16 1.48 3.59 -93.30 -0.33 1.14 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.12 6.44 -51.93 -0.33 0.79 16 42 H 0.07 1.08 5.70 -51.93 -0.30 0.78 16 43 H 0.08 1.47 5.63 -51.92 -0.29 1.17 16 44 H 0.06 1.03 5.46 -51.93 -0.28 0.75 16 45 H 0.03 0.68 4.44 -51.93 -0.23 0.45 16 46 H 0.04 0.95 7.23 -51.93 -0.38 0.58 16 47 H 0.26 8.44 8.73 -40.82 -0.36 8.08 16 48 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.02 0.36 5.99 -51.93 -0.31 0.05 16 50 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -35.47 368.80 -10.14 -45.61 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.46 Total: -0.90 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.58 Total: -3.00 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.49 Total: -62.79 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.05 Total: -8.38 kcal Atomic # 14 Polarization: 28.13 SS G_CDS: -4.23 Total: 23.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.47 -10.14 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.545 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds