Wall clock time and date at job start Wed Apr 1 2020 03:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38805 * 120.42727 * 2 1 4 4 C 1.39494 * 118.26142 * 180.25712 * 3 2 1 5 5 C 1.48460 * 120.54635 * 179.75832 * 4 3 2 6 6 O 1.21481 * 119.99656 * 10.47639 * 5 4 3 7 7 N 1.34771 * 119.99728 * 190.46881 * 5 4 3 8 8 C 1.46930 * 120.63465 * 8.17819 * 7 5 4 9 9 C 1.53190 * 108.77311 * 233.62880 * 8 7 5 10 10 C 1.53038 * 109.31283 * 305.35909 * 9 8 7 11 11 C 1.53037 * 109.53964 * 61.36787 * 10 9 8 12 12 C 1.46923 * 120.63115 * 188.19284 * 7 5 4 13 13 H 1.08996 * 109.70848 * 246.23139 * 12 7 5 14 14 C 1.53005 * 109.58515 * 6.58803 * 12 7 5 15 15 H 1.08996 * 110.88676 * 302.90299 * 14 12 7 16 16 C 1.55147 * 111.03831 * 66.81220 * 14 12 7 17 17 C 1.54334 * 103.02330 * 153.39547 * 16 14 12 18 18 N 1.47022 * 107.26451 * 338.14285 * 17 16 14 19 19 C 1.36934 * 125.64804 * 178.85089 * 18 17 16 20 20 H 1.08000 * 119.99869 * 175.84948 * 19 18 17 21 21 C 1.38813 * 120.00235 * 355.84978 * 19 18 17 22 22 N 1.31625 * 119.99795 * 216.36358 * 21 19 18 23 23 Si 1.86800 * 120.00162 * 36.35460 * 21 19 18 24 24 H 1.48497 * 109.47411 * 266.97671 * 23 21 19 25 25 H 1.48498 * 109.47137 * 146.97105 * 23 21 19 26 26 H 1.48500 * 109.46962 * 26.97396 * 23 21 19 27 27 C 1.47427 * 108.70345 * 358.58123 * 18 17 16 28 28 N 1.33096 * 118.90138 * 359.49157 * 4 3 2 29 29 C 1.31553 * 120.74178 * 0.26960 * 28 4 3 30 30 N 1.31919 * 121.91311 * 359.97438 * 29 28 4 31 31 H 1.08999 * 109.47141 * 270.25470 * 1 2 3 32 32 H 1.08996 * 109.47299 * 30.25827 * 1 2 3 33 33 H 1.09006 * 109.46912 * 150.25418 * 1 2 3 34 34 H 1.08006 * 120.86797 * 0.04235 * 3 2 1 35 35 H 1.08997 * 109.58827 * 113.83464 * 8 7 5 36 36 H 1.09009 * 109.69844 * 353.48065 * 8 7 5 37 37 H 1.09003 * 109.49727 * 185.40887 * 9 8 7 38 38 H 1.08996 * 109.50040 * 65.31024 * 9 8 7 39 39 H 1.09005 * 109.46060 * 301.34878 * 10 9 8 40 40 H 1.09001 * 109.46124 * 181.38672 * 10 9 8 41 41 H 1.08996 * 109.50233 * 178.68060 * 11 10 9 42 42 H 1.09004 * 109.52546 * 58.59745 * 11 10 9 43 43 H 1.09007 * 110.72261 * 271.95211 * 16 14 12 44 44 H 1.09001 * 110.72087 * 35.04989 * 16 14 12 45 45 H 1.08996 * 109.99371 * 218.66255 * 17 16 14 46 46 H 1.09007 * 109.77804 * 97.49269 * 17 16 14 47 47 H 0.96999 * 119.99848 * 5.00034 * 22 21 19 48 48 H 1.08995 * 110.36313 * 143.19575 * 27 18 17 49 49 H 1.09000 * 110.36901 * 265.52080 * 27 18 17 50 50 H 1.07999 * 119.04657 * 179.97438 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1442 -0.0055 5 6 4.4062 2.3933 -0.0112 6 8 3.8647 3.4638 0.1802 7 7 5.7352 2.3396 -0.2285 8 6 6.3768 1.0825 -0.6370 9 6 7.5276 0.7801 0.3279 10 6 8.4744 1.9813 0.3786 11 6 7.7189 3.2070 0.8972 12 6 6.5701 3.5369 -0.0612 13 1 6.9753 3.8403 -1.0264 14 6 5.7267 4.6730 0.5210 15 1 4.8657 4.8824 -0.1137 16 6 5.2826 4.3498 1.9720 17 6 5.0952 5.7480 2.5979 18 7 5.8884 6.6936 1.7990 19 6 5.9734 8.0435 2.0125 20 1 6.6378 8.6448 1.4095 21 6 5.2058 8.6392 3.0038 22 7 4.7035 9.8410 2.8143 23 14 4.8854 7.7352 4.6068 24 1 3.6082 6.9845 4.5050 25 1 4.7962 8.7155 5.7187 26 1 5.9972 6.7869 4.8710 27 6 6.5823 5.9468 0.7340 28 7 4.2027 -0.0445 -0.0002 29 6 3.4955 -1.1537 0.0048 30 7 2.1764 -1.1397 0.0052 31 1 -0.3633 0.0046 1.0276 32 1 -0.3634 0.8876 -0.5178 33 1 -0.3633 -0.8923 -0.5099 34 1 1.6912 2.1442 0.0007 35 1 6.7661 1.1832 -1.6501 36 1 5.6495 0.2711 -0.6040 37 1 8.0722 -0.0980 -0.0193 38 1 7.1272 0.5902 1.3236 39 1 8.8553 2.1861 -0.6220 40 1 9.3074 1.7593 1.0457 41 1 8.3995 4.0563 0.9553 42 1 7.3165 2.9948 1.8878 43 1 4.3441 3.7952 1.9737 44 1 6.0585 3.7937 2.4980 45 1 5.4494 5.7454 3.6287 46 1 4.0423 6.0283 2.5663 47 1 4.8081 10.2805 1.9559 48 1 6.6183 6.5371 -0.1815 49 1 7.5893 5.6783 1.0532 50 1 4.0097 -2.1034 0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039199538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:59 Heat of formation + Delta-G solvation = 68.533070 kcal Electronic energy + Delta-G solvation = -31840.772352 eV Core-core repulsion = 27869.927529 eV Total energy + Delta-G solvation = -3970.844822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.65349 -41.53099 -39.10730 -38.34505 -35.93649 -34.93687 -33.87880 -33.57418 -32.87714 -30.78372 -29.76322 -29.31677 -27.22827 -25.80219 -25.39442 -24.57378 -24.09651 -22.57564 -22.00011 -21.31993 -20.26306 -19.54183 -18.66424 -18.05320 -17.26543 -17.08408 -16.87754 -16.74163 -16.40935 -16.27385 -15.89579 -15.58104 -15.31570 -15.15838 -14.95299 -14.80950 -14.70081 -14.25201 -14.06784 -13.92556 -13.76677 -13.32837 -13.22215 -13.17120 -12.94119 -12.81970 -12.48425 -12.37530 -12.03644 -11.92952 -11.88764 -11.73724 -11.65422 -11.51262 -11.42596 -11.35176 -10.99527 -10.72464 -10.57559 -10.43193 -9.75777 -9.53122 -9.11489 -8.72946 -5.33765 -0.62967 -0.18317 1.37015 1.45299 1.59912 1.63919 1.76724 2.51587 2.65788 2.77792 2.88308 3.02996 3.23695 3.40268 3.63749 3.69083 3.81018 3.91275 3.93099 4.02105 4.11059 4.20424 4.25470 4.32544 4.37522 4.41989 4.49764 4.53318 4.66942 4.71339 4.74517 4.76347 4.80100 4.84427 4.89704 4.96385 5.03748 5.08594 5.13882 5.17931 5.24150 5.26879 5.28721 5.41369 5.51055 5.56615 5.63058 5.72954 5.85520 6.08347 6.35232 6.80370 6.84194 7.03975 7.50860 8.18276 8.76594 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011978 B = 0.003707 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.115689 B = 7550.722539 C = 9150.968825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.185 3.815 3 C -0.181 4.181 4 C 0.128 3.872 5 C 0.551 3.449 6 O -0.534 6.534 7 N -0.577 5.577 8 C 0.050 3.950 9 C -0.119 4.119 10 C -0.117 4.117 11 C -0.134 4.134 12 C 0.163 3.837 13 H 0.085 0.915 14 C -0.087 4.087 15 H 0.095 0.905 16 C -0.107 4.107 17 C 0.110 3.890 18 N -0.627 5.627 19 C -0.336 4.336 20 H 0.052 0.948 21 C -0.064 4.064 22 N -0.935 5.935 23 Si 1.087 2.913 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.273 1.273 27 C 0.133 3.867 28 N -0.494 5.494 29 C 0.295 3.705 30 N -0.519 5.519 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.066 0.934 36 H 0.166 0.834 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.010 0.990 47 H 0.253 0.747 48 H 0.029 0.971 49 H 0.037 0.963 50 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -31.502 -9.156 32.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.037 3.963 3 C -0.204 4.204 4 C -0.017 4.017 5 C 0.338 3.662 6 O -0.411 6.411 7 N -0.308 5.308 8 C -0.071 4.071 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.172 4.172 12 C 0.060 3.940 13 H 0.103 0.897 14 C -0.106 4.106 15 H 0.113 0.887 16 C -0.144 4.144 17 C -0.014 4.014 18 N -0.354 5.354 19 C -0.464 4.464 20 H 0.070 0.930 21 C -0.260 4.260 22 N -0.576 5.576 23 Si 0.915 3.085 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.199 1.199 27 C 0.008 3.992 28 N -0.211 5.211 29 C 0.009 3.991 30 N -0.235 5.235 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.175 0.825 35 H 0.084 0.916 36 H 0.182 0.818 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.055 0.945 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.998 -31.521 -7.584 32.436 hybrid contribution 0.529 1.832 -1.428 2.382 sum -0.469 -29.690 -9.012 31.031 Atomic orbital electron populations 1.20960 0.85050 1.05485 1.05050 1.22307 0.99351 0.87017 0.87629 1.22928 0.94320 1.02199 1.00956 1.21642 0.92478 0.92439 0.95179 1.18246 0.82775 0.87111 0.78115 1.90844 1.71868 1.28841 1.49591 1.48018 1.05421 1.12157 1.65174 1.23499 0.99119 0.87120 0.97375 1.21769 0.95852 0.98405 0.99680 1.21560 0.98029 0.93894 1.01936 1.22110 0.96535 0.99781 0.98801 1.21131 0.90378 0.83264 0.99196 0.89717 1.22739 0.97786 0.93130 0.96972 0.88740 1.22860 1.01719 0.94353 0.95499 1.21662 0.94019 0.91093 0.94662 1.44866 1.54179 1.03147 1.33229 1.19854 1.24446 0.82491 1.19605 0.92973 1.26669 0.95455 0.98058 1.05828 1.70984 1.40354 1.19085 1.27200 0.83633 0.76666 0.73764 0.74435 1.21217 1.22487 1.19915 1.21895 0.94801 0.92100 0.90425 1.68019 1.39173 0.98609 1.15284 1.25935 0.86732 0.97767 0.88684 1.68341 1.10956 1.30357 1.13836 0.88211 0.88565 0.88661 0.82502 0.91601 0.81840 0.88468 0.92632 0.91007 0.90778 0.90776 0.91980 0.90239 0.90698 0.95778 0.97237 0.93849 0.95270 0.94533 0.74382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.22 71.24 0.73 -0.28 16 2 C 0.18 2.91 6.83 42.64 0.29 3.20 16 3 C -0.18 -3.59 9.41 22.71 0.21 -3.37 16 4 C 0.13 2.82 6.62 41.98 0.28 3.10 16 5 C 0.55 15.21 6.75 86.97 0.59 15.80 16 6 O -0.53 -18.68 10.20 -3.65 -0.04 -18.71 16 7 N -0.58 -13.87 2.95 -797.71 -2.36 -16.22 16 8 C 0.05 0.84 6.19 86.36 0.53 1.37 16 9 C -0.12 -1.72 6.08 30.67 0.19 -1.53 16 10 C -0.12 -1.93 5.88 30.62 0.18 -1.75 16 11 C -0.13 -3.19 4.72 30.67 0.14 -3.05 16 12 C 0.16 4.42 2.82 44.98 0.13 4.55 16 13 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.09 -3.21 2.13 -9.40 -0.02 -3.23 16 15 H 0.09 4.00 5.81 -10.79 -0.06 3.93 16 16 C -0.11 -4.16 5.30 31.78 0.17 -3.99 16 17 C 0.11 5.45 4.92 86.73 0.43 5.88 16 18 N -0.63 -34.06 3.37 -691.95 -2.33 -36.39 16 19 C -0.34 -21.06 10.36 84.03 0.87 -20.19 16 20 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 21 C -0.06 -4.04 5.40 84.86 0.46 -3.59 16 22 N -0.93 -62.62 13.70 21.65 0.30 -62.33 16 23 Si 1.09 57.84 24.86 68.60 1.71 59.55 16 24 H -0.29 -14.61 6.86 99.48 0.68 -13.92 16 25 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 26 H -0.27 -13.56 6.24 99.48 0.62 -12.94 16 27 C 0.13 5.82 6.61 86.86 0.57 6.39 16 28 N -0.49 -8.36 6.33 -189.16 -1.20 -9.55 16 29 C 0.30 3.82 12.28 180.92 2.22 6.04 16 30 N -0.52 -8.07 10.36 -188.10 -1.95 -10.02 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.16 3.17 7.77 -2.91 -0.02 3.15 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.17 2.57 3.59 -84.08 -0.30 2.27 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.87 6.44 -2.39 -0.02 1.86 16 42 H 0.06 1.64 5.70 -2.38 -0.01 1.63 16 43 H 0.08 3.09 5.63 -2.38 -0.01 3.08 16 44 H 0.07 2.63 5.46 -2.39 -0.01 2.62 16 45 H 0.02 1.22 4.44 -2.39 -0.01 1.21 16 46 H 0.01 0.52 7.23 -2.38 -0.02 0.51 16 47 H 0.25 16.92 8.73 -92.71 -0.81 16.11 16 48 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.04 1.49 5.99 -2.39 -0.01 1.47 16 50 H 0.24 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -79.83 368.80 2.58 -77.26 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.48 Total: 11.07 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 7.97 Total: 5.35 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -7.54 Total: -134.51 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.04 Total: -18.71 kcal Atomic # 14 Polarization: 57.84 SS G_CDS: 1.71 Total: 59.55 kcal Total: -79.83 2.58 -77.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.788 kcal (2) G-P(sol) polarization free energy of solvation -79.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds