Wall clock time and date at job start Wed Apr 1 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38803 * 120.42933 * 2 1 4 4 C 1.39496 * 118.26505 * 180.26030 * 3 2 1 5 5 C 1.48455 * 120.54972 * 179.71762 * 4 3 2 6 6 O 1.21470 * 120.00162 * 16.76225 * 5 4 3 7 7 N 1.34775 * 119.99470 * 196.76228 * 5 4 3 8 8 C 1.46922 * 120.63607 * 1.16683 * 7 5 4 9 9 C 1.53623 * 108.54511 * 126.37115 * 8 7 5 10 10 C 1.53038 * 109.24334 * 54.85494 * 9 8 7 11 11 C 1.53037 * 109.53731 * 298.51146 * 10 9 8 12 12 C 1.46931 * 120.62933 * 181.44667 * 7 5 4 13 13 H 1.08997 * 109.59001 * 113.79497 * 12 7 5 14 14 C 1.53002 * 109.58233 * 353.51582 * 12 7 5 15 15 H 1.09001 * 110.64516 * 317.49119 * 14 12 7 16 16 C 1.55158 * 110.72226 * 80.63866 * 14 12 7 17 17 C 1.55118 * 101.48622 * 153.73174 * 16 14 12 18 18 N 1.47427 * 104.94279 * 323.22230 * 17 16 14 19 19 C 1.36938 * 125.64865 * 204.03815 * 18 17 16 20 20 H 1.07996 * 120.00289 * 179.97438 * 19 18 17 21 21 C 1.38819 * 119.99991 * 359.95937 * 19 18 17 22 22 N 1.31620 * 119.99712 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47264 * 60.00245 * 23 21 19 25 25 H 1.48506 * 109.46871 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47318 * 299.99865 * 23 21 19 27 27 C 1.47015 * 108.70587 * 24.00294 * 18 17 16 28 28 N 1.33109 * 118.89907 * 359.44650 * 4 3 2 29 29 C 1.31550 * 120.73578 * 0.27242 * 28 4 3 30 30 N 1.31918 * 121.91699 * 0.02562 * 29 28 4 31 31 H 1.08995 * 109.47211 * 270.30422 * 1 2 3 32 32 H 1.09007 * 109.47438 * 30.30072 * 1 2 3 33 33 H 1.09006 * 109.47451 * 150.29597 * 1 2 3 34 34 H 1.08008 * 120.87004 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.58874 * 246.19954 * 8 7 5 36 36 H 1.09004 * 109.58519 * 6.62766 * 8 7 5 37 37 H 1.08998 * 109.63240 * 294.86198 * 9 8 7 38 38 H 1.09000 * 109.45709 * 174.74410 * 9 8 7 39 39 H 1.09006 * 109.45636 * 178.48846 * 10 9 8 40 40 H 1.09006 * 109.44776 * 58.53066 * 10 9 8 41 41 H 1.08998 * 109.50135 * 301.41189 * 11 10 9 42 42 H 1.09003 * 109.51883 * 181.32920 * 11 10 9 43 43 H 1.08998 * 111.00216 * 271.93826 * 16 14 12 44 44 H 1.08999 * 111.00331 * 35.78588 * 16 14 12 45 45 H 1.09001 * 110.42024 * 204.29309 * 17 16 14 46 46 H 1.08996 * 110.21071 * 82.04293 * 17 16 14 47 47 H 0.97001 * 119.99516 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.88487 * 239.52861 * 27 18 17 49 49 H 1.08999 * 109.88522 * 118.35515 * 27 18 17 50 50 H 1.07999 * 119.04477 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1442 -0.0056 5 6 4.4062 2.3932 -0.0122 6 8 3.8882 3.4494 0.2906 7 7 5.7093 2.3552 -0.3540 8 6 6.3436 1.0896 -0.7472 9 6 7.0167 1.2844 -2.1143 10 6 7.9788 2.4721 -2.0381 11 6 7.1966 3.7436 -1.7012 12 6 6.5243 3.5777 -0.3348 13 1 7.2865 3.4966 0.4401 14 6 5.6298 4.7858 -0.0498 15 1 4.7003 4.7177 -0.6151 16 6 5.3405 4.9086 1.4696 17 6 5.0727 6.4299 1.6111 18 7 6.0136 7.0703 0.6741 19 6 6.4792 8.3550 0.7640 20 1 7.1696 8.7322 0.0242 21 6 6.0636 9.1726 1.8061 22 7 5.2216 8.7131 2.7073 23 14 6.6994 10.9247 1.9291 24 1 6.3159 11.6774 0.7078 25 1 6.1082 11.5831 3.1218 26 1 8.1789 10.9067 2.0554 27 6 6.3698 6.1012 -0.3724 28 7 4.2027 -0.0446 0.0006 29 6 3.4954 -1.1537 0.0064 30 7 2.1763 -1.1397 0.0059 31 1 -0.3633 0.0055 1.0276 32 1 -0.3634 0.8873 -0.5185 33 1 -0.3634 -0.8927 -0.5092 34 1 1.6913 2.1442 0.0004 35 1 7.0914 0.8097 -0.0053 36 1 5.5867 0.3084 -0.8190 37 1 6.2576 1.4792 -2.8718 38 1 7.5709 0.3836 -2.3778 39 1 8.4784 2.5969 -2.9989 40 1 8.7229 2.2873 -1.2632 41 1 6.4358 3.9153 -2.4626 42 1 7.8786 4.5933 -1.6702 43 1 4.4620 4.3267 1.7483 44 1 6.2080 4.6094 2.0579 45 1 5.2713 6.7577 2.6315 46 1 4.0443 6.6588 1.3317 47 1 4.9315 9.2843 3.4357 48 1 7.4464 5.9311 -0.3693 49 1 6.0542 6.4747 -1.3466 50 1 4.0095 -2.1035 0.0118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039199541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:04 Heat of formation + Delta-G solvation = 84.842751 kcal Electronic energy + Delta-G solvation = -31476.238379 eV Core-core repulsion = 27506.100797 eV Total energy + Delta-G solvation = -3970.137582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.70961 -40.33627 -37.48091 -36.85220 -35.02463 -33.22954 -32.80710 -32.49240 -30.92633 -29.19182 -28.83957 -27.10600 -26.00419 -24.58289 -24.38524 -23.66673 -22.62407 -21.14881 -19.85039 -19.65609 -19.51230 -17.96837 -17.06209 -16.71454 -16.05976 -15.88690 -15.77080 -15.67181 -14.88256 -14.75259 -14.55633 -14.22768 -14.04938 -13.70803 -13.57408 -13.37760 -13.24843 -13.03710 -12.87977 -12.71882 -12.33346 -12.05706 -11.76397 -11.53056 -11.36056 -11.19178 -11.02882 -10.87825 -10.81546 -10.75463 -10.70080 -10.58429 -10.15065 -9.96036 -9.88444 -9.76386 -9.52481 -9.34465 -9.23811 -8.72136 -8.48721 -8.32366 -6.65742 -5.50449 -2.91961 0.27502 0.54781 2.65969 2.82038 3.46259 3.47318 3.50813 3.52676 3.64208 3.66936 4.07248 4.52605 4.59930 4.62763 4.79537 4.85732 4.92955 4.98284 5.10467 5.14754 5.18448 5.32628 5.38518 5.42596 5.50009 5.57762 5.60673 5.71874 5.76461 5.83345 5.86560 5.96042 6.05395 6.09881 6.11579 6.17815 6.27015 6.34759 6.45313 6.53921 6.61864 6.65963 6.86268 7.01609 7.13367 7.31657 7.43318 7.62247 7.73303 7.83280 8.05252 8.21632 8.53613 9.37173 9.98696 10.66414 11.52340 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.003095 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.338513 B = 9045.782370 C =10652.616369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.179 3.821 3 C -0.171 4.171 4 C 0.143 3.857 5 C 0.549 3.451 6 O -0.485 6.485 7 N -0.580 5.580 8 C 0.070 3.930 9 C -0.134 4.134 10 C -0.122 4.122 11 C -0.131 4.131 12 C 0.158 3.842 13 H 0.073 0.927 14 C -0.095 4.095 15 H 0.103 0.897 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.605 5.605 19 C -0.219 4.219 20 H 0.074 0.926 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.139 3.861 28 N -0.495 5.495 29 C 0.290 3.710 30 N -0.513 5.513 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.064 0.936 36 H 0.144 0.856 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.099 0.901 46 H 0.009 0.991 47 H 0.250 0.750 48 H 0.018 0.982 49 H 0.016 0.984 50 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -23.747 -8.603 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.031 3.969 3 C -0.194 4.194 4 C -0.003 4.003 5 C 0.334 3.666 6 O -0.359 6.359 7 N -0.312 5.312 8 C -0.053 4.053 9 C -0.173 4.173 10 C -0.159 4.159 11 C -0.170 4.170 12 C 0.055 3.945 13 H 0.091 0.909 14 C -0.114 4.114 15 H 0.120 0.880 16 C -0.169 4.169 17 C 0.032 3.968 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.092 0.908 21 C -0.209 4.209 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.012 3.988 28 N -0.213 5.213 29 C 0.003 3.997 30 N -0.228 5.228 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.179 0.821 35 H 0.083 0.917 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.117 0.883 46 H 0.027 0.973 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.033 0.967 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.375 -23.796 -8.290 25.423 hybrid contribution 0.210 1.599 -0.006 1.613 sum -3.164 -22.197 -8.296 23.907 Atomic orbital electron populations 1.20835 0.87194 1.04405 1.04129 1.21855 0.97961 0.87742 0.89308 1.22844 0.94600 1.01516 1.00405 1.22029 0.92349 0.92747 0.93194 1.17902 0.82350 0.86600 0.79761 1.90921 1.71257 1.27685 1.46023 1.47906 1.08436 1.09984 1.64902 1.23054 1.00118 0.87150 0.94965 1.22022 0.98926 0.98606 0.97713 1.21565 0.97879 0.94900 1.01576 1.22043 0.99889 0.98090 0.96934 1.21487 0.92631 0.83438 0.96898 0.90907 1.22694 0.97964 0.91249 0.99524 0.87961 1.23351 0.99895 1.00255 0.93410 1.21890 0.91269 0.86054 0.97607 1.44531 1.52101 1.09765 1.26657 1.19038 1.21082 0.86787 1.07904 0.90783 1.24783 0.99776 0.98452 0.97878 1.69845 1.36571 1.34876 1.15729 0.86186 0.78133 0.84423 0.76952 1.21351 1.21655 1.21297 1.21428 0.95871 0.89309 0.92187 1.68336 1.39700 0.98860 1.14377 1.25119 0.86786 0.97080 0.90725 1.68206 1.10450 1.30498 1.13694 0.89235 0.89656 0.89694 0.82109 0.91722 0.84028 0.92083 0.91154 0.91973 0.91860 0.91580 0.89899 0.90279 0.94007 0.88278 0.97330 0.93898 0.96416 0.96656 0.78203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.22 36.00 0.37 -0.28 16 2 C 0.18 1.64 6.83 -82.24 -0.56 1.08 16 3 C -0.17 -1.84 9.41 -38.90 -0.37 -2.20 16 4 C 0.14 1.75 6.56 -82.63 -0.54 1.21 16 5 C 0.55 8.15 7.43 -12.05 -0.09 8.06 16 6 O -0.48 -8.66 9.46 5.39 0.05 -8.61 16 7 N -0.58 -7.98 2.97 -165.84 -0.49 -8.47 16 8 C 0.07 0.74 6.05 -3.49 -0.02 0.72 16 9 C -0.13 -1.27 6.10 -26.39 -0.16 -1.43 16 10 C -0.12 -1.26 5.88 -26.69 -0.16 -1.42 16 11 C -0.13 -1.73 4.76 -26.61 -0.13 -1.86 16 12 C 0.16 2.43 2.55 -67.60 -0.17 2.26 16 13 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 14 C -0.10 -1.86 1.90 -88.78 -0.17 -2.03 16 15 H 0.10 2.12 5.81 -52.48 -0.30 1.81 16 16 C -0.13 -2.86 5.77 -24.47 -0.14 -3.00 16 17 C 0.16 4.19 5.89 -2.41 -0.01 4.18 16 18 N -0.60 -16.66 3.40 -169.94 -0.58 -17.24 16 19 C -0.22 -6.45 10.27 -15.06 -0.15 -6.61 16 20 H 0.07 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 22 N -0.92 -28.27 10.09 55.49 0.56 -27.71 16 23 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 C 0.14 3.10 5.85 -3.06 -0.02 3.09 16 28 N -0.49 -5.17 6.40 -11.14 -0.07 -5.24 16 29 C 0.29 2.51 12.28 -92.26 -1.13 1.38 16 30 N -0.51 -4.91 10.36 -10.81 -0.11 -5.02 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.16 1.65 7.83 -52.48 -0.41 1.24 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.14 1.44 3.89 -83.21 -0.32 1.12 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.14 6.54 -51.93 -0.34 0.80 16 43 H 0.08 1.71 5.61 -51.94 -0.29 1.42 16 44 H 0.04 0.91 7.81 -51.93 -0.41 0.50 16 45 H 0.10 2.95 5.87 -51.93 -0.31 2.64 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.02 0.39 6.61 -51.93 -0.34 0.04 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -34.16 378.27 -11.27 -45.42 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.75 Total: 0.60 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.55 Total: 2.66 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -0.69 Total: -63.69 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.05 Total: -8.61 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.16 -11.27 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.265 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds