Wall clock time and date at job start Wed Apr 1 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38803 * 120.42933 * 2 1 4 4 C 1.39496 * 118.26505 * 180.26030 * 3 2 1 5 5 C 1.48455 * 120.54972 * 179.71762 * 4 3 2 6 6 O 1.21470 * 120.00162 * 16.76225 * 5 4 3 7 7 N 1.34775 * 119.99470 * 196.76228 * 5 4 3 8 8 C 1.46922 * 120.63607 * 1.16683 * 7 5 4 9 9 C 1.53623 * 108.54511 * 126.37115 * 8 7 5 10 10 C 1.53038 * 109.24334 * 54.85494 * 9 8 7 11 11 C 1.53037 * 109.53731 * 298.51146 * 10 9 8 12 12 C 1.46931 * 120.62933 * 181.44667 * 7 5 4 13 13 H 1.08997 * 109.59001 * 113.79497 * 12 7 5 14 14 C 1.53002 * 109.58233 * 353.51582 * 12 7 5 15 15 H 1.09001 * 110.64516 * 317.49119 * 14 12 7 16 16 C 1.55158 * 110.72226 * 80.63866 * 14 12 7 17 17 C 1.55118 * 101.48622 * 153.73174 * 16 14 12 18 18 N 1.47427 * 104.94279 * 323.22230 * 17 16 14 19 19 C 1.36938 * 125.64865 * 204.03815 * 18 17 16 20 20 H 1.07996 * 120.00289 * 179.97438 * 19 18 17 21 21 C 1.38819 * 119.99991 * 359.95937 * 19 18 17 22 22 N 1.31620 * 119.99712 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47264 * 60.00245 * 23 21 19 25 25 H 1.48506 * 109.46871 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47318 * 299.99865 * 23 21 19 27 27 C 1.47015 * 108.70587 * 24.00294 * 18 17 16 28 28 N 1.33109 * 118.89907 * 359.44650 * 4 3 2 29 29 C 1.31550 * 120.73578 * 0.27242 * 28 4 3 30 30 N 1.31918 * 121.91699 * 0.02562 * 29 28 4 31 31 H 1.08995 * 109.47211 * 270.30422 * 1 2 3 32 32 H 1.09007 * 109.47438 * 30.30072 * 1 2 3 33 33 H 1.09006 * 109.47451 * 150.29597 * 1 2 3 34 34 H 1.08008 * 120.87004 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.58874 * 246.19954 * 8 7 5 36 36 H 1.09004 * 109.58519 * 6.62766 * 8 7 5 37 37 H 1.08998 * 109.63240 * 294.86198 * 9 8 7 38 38 H 1.09000 * 109.45709 * 174.74410 * 9 8 7 39 39 H 1.09006 * 109.45636 * 178.48846 * 10 9 8 40 40 H 1.09006 * 109.44776 * 58.53066 * 10 9 8 41 41 H 1.08998 * 109.50135 * 301.41189 * 11 10 9 42 42 H 1.09003 * 109.51883 * 181.32920 * 11 10 9 43 43 H 1.08998 * 111.00216 * 271.93826 * 16 14 12 44 44 H 1.08999 * 111.00331 * 35.78588 * 16 14 12 45 45 H 1.09001 * 110.42024 * 204.29309 * 17 16 14 46 46 H 1.08996 * 110.21071 * 82.04293 * 17 16 14 47 47 H 0.97001 * 119.99516 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.88487 * 239.52861 * 27 18 17 49 49 H 1.08999 * 109.88522 * 118.35515 * 27 18 17 50 50 H 1.07999 * 119.04477 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1442 -0.0056 5 6 4.4062 2.3932 -0.0122 6 8 3.8882 3.4494 0.2906 7 7 5.7093 2.3552 -0.3540 8 6 6.3436 1.0896 -0.7472 9 6 7.0167 1.2844 -2.1143 10 6 7.9788 2.4721 -2.0381 11 6 7.1966 3.7436 -1.7012 12 6 6.5243 3.5777 -0.3348 13 1 7.2865 3.4966 0.4401 14 6 5.6298 4.7858 -0.0498 15 1 4.7003 4.7177 -0.6151 16 6 5.3405 4.9086 1.4696 17 6 5.0727 6.4299 1.6111 18 7 6.0136 7.0703 0.6741 19 6 6.4792 8.3550 0.7640 20 1 7.1696 8.7322 0.0242 21 6 6.0636 9.1726 1.8061 22 7 5.2216 8.7131 2.7073 23 14 6.6994 10.9247 1.9291 24 1 6.3159 11.6774 0.7078 25 1 6.1082 11.5831 3.1218 26 1 8.1789 10.9067 2.0554 27 6 6.3698 6.1012 -0.3724 28 7 4.2027 -0.0446 0.0006 29 6 3.4954 -1.1537 0.0064 30 7 2.1763 -1.1397 0.0059 31 1 -0.3633 0.0055 1.0276 32 1 -0.3634 0.8873 -0.5185 33 1 -0.3634 -0.8927 -0.5092 34 1 1.6913 2.1442 0.0004 35 1 7.0914 0.8097 -0.0053 36 1 5.5867 0.3084 -0.8190 37 1 6.2576 1.4792 -2.8718 38 1 7.5709 0.3836 -2.3778 39 1 8.4784 2.5969 -2.9989 40 1 8.7229 2.2873 -1.2632 41 1 6.4358 3.9153 -2.4626 42 1 7.8786 4.5933 -1.6702 43 1 4.4620 4.3267 1.7483 44 1 6.2080 4.6094 2.0579 45 1 5.2713 6.7577 2.6315 46 1 4.0443 6.6588 1.3317 47 1 4.9315 9.2843 3.4357 48 1 7.4464 5.9311 -0.3693 49 1 6.0542 6.4747 -1.3466 50 1 4.0095 -2.1035 0.0118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039199541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:03 Heat of formation + Delta-G solvation = 65.201583 kcal Electronic energy + Delta-G solvation = -31477.090084 eV Core-core repulsion = 27506.100797 eV Total energy + Delta-G solvation = -3970.989287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.59710 -41.43429 -38.86231 -38.33096 -35.89435 -34.78880 -33.87671 -33.50173 -32.49258 -30.90724 -29.68160 -28.69097 -27.29302 -26.21003 -25.39544 -24.50832 -23.89798 -22.38477 -21.60005 -21.10136 -20.65601 -18.95401 -18.77730 -17.93659 -17.19771 -16.98511 -16.84233 -16.62277 -16.51397 -15.97095 -15.77840 -15.61688 -15.16596 -14.98306 -14.69497 -14.34258 -14.19670 -14.11418 -14.03325 -13.87512 -13.63155 -13.47884 -13.19379 -13.14964 -12.92710 -12.70877 -12.39697 -12.29181 -12.09131 -12.01277 -11.89375 -11.73634 -11.71298 -11.58356 -11.41060 -11.21051 -11.07994 -10.77638 -10.67283 -10.42243 -9.79202 -9.52372 -8.87664 -7.75395 -5.21576 -0.59541 -0.16930 1.43857 1.48892 1.55226 1.63522 1.76404 2.49846 2.64804 2.81936 3.04160 3.25410 3.32453 3.62515 3.70383 3.77257 3.84489 3.93418 4.03297 4.13585 4.19379 4.25860 4.34380 4.35965 4.46237 4.51400 4.61338 4.67036 4.71768 4.72303 4.80755 4.86256 4.90911 4.94604 4.99524 5.06711 5.12188 5.15189 5.21972 5.23751 5.29152 5.41964 5.45459 5.47519 5.55879 5.66385 5.75372 5.81167 5.82814 6.29695 6.36039 6.86357 7.07912 7.10460 7.78976 8.46116 9.26187 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.003095 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.338513 B = 9045.782370 C =10652.616369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.183 3.817 3 C -0.181 4.181 4 C 0.128 3.872 5 C 0.544 3.456 6 O -0.528 6.528 7 N -0.578 5.578 8 C 0.066 3.934 9 C -0.128 4.128 10 C -0.116 4.116 11 C -0.127 4.127 12 C 0.163 3.837 13 H 0.070 0.930 14 C -0.076 4.076 15 H 0.090 0.910 16 C -0.113 4.113 17 C 0.163 3.837 18 N -0.627 5.627 19 C -0.242 4.242 20 H 0.082 0.918 21 C -0.073 4.073 22 N -0.952 5.952 23 Si 0.986 3.014 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.136 3.864 28 N -0.498 5.498 29 C 0.294 3.706 30 N -0.520 5.520 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.152 0.848 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.067 0.933 46 H -0.027 1.027 47 H 0.246 0.754 48 H 0.032 0.968 49 H 0.014 0.986 50 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -26.263 -9.996 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.036 3.964 3 C -0.204 4.204 4 C -0.017 4.017 5 C 0.330 3.670 6 O -0.406 6.406 7 N -0.309 5.309 8 C -0.055 4.055 9 C -0.166 4.166 10 C -0.154 4.154 11 C -0.165 4.165 12 C 0.060 3.940 13 H 0.088 0.912 14 C -0.095 4.095 15 H 0.108 0.892 16 C -0.151 4.151 17 C 0.038 3.962 18 N -0.353 5.353 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.264 4.264 22 N -0.602 5.602 23 Si 0.813 3.187 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.199 1.199 27 C 0.011 3.989 28 N -0.216 5.216 29 C 0.007 3.993 30 N -0.235 5.235 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.168 0.832 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.085 0.915 46 H -0.009 1.009 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.032 0.968 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.261 -26.364 -9.724 28.190 hybrid contribution -0.186 2.291 0.413 2.335 sum -2.447 -24.073 -9.311 25.926 Atomic orbital electron populations 1.20952 0.84960 1.05481 1.05046 1.22309 0.99376 0.86985 0.87777 1.22920 0.94240 1.02217 1.01055 1.21640 0.92531 0.92428 0.95124 1.18323 0.82652 0.87162 0.78822 1.90876 1.72078 1.29495 1.48147 1.48032 1.08152 1.10461 1.64286 1.23310 1.00523 0.85681 0.95965 1.22006 0.98694 0.99400 0.96533 1.21550 0.97777 0.93443 1.02630 1.21988 0.99722 0.99773 0.95053 1.21268 0.91785 0.82554 0.98377 0.91173 1.22468 0.97956 0.91903 0.97197 0.89176 1.23146 1.00042 0.96410 0.95478 1.21621 0.89452 0.89383 0.95741 1.44862 1.52077 1.10270 1.28089 1.19490 1.21362 0.87955 1.08253 0.89973 1.25747 1.00183 1.02956 0.97561 1.70124 1.37752 1.36155 1.16139 0.85046 0.77929 0.78862 0.76838 1.20378 1.21892 1.19923 1.21611 0.96896 0.89674 0.90749 1.68279 1.39837 0.98588 1.14902 1.25899 0.86737 0.97718 0.88914 1.68332 1.10943 1.30379 1.13874 0.88209 0.88548 0.88655 0.82505 0.90938 0.83161 0.92618 0.88261 0.90296 0.91208 0.92211 0.90578 0.89923 0.93951 0.91538 1.00884 0.94450 0.94999 0.96767 0.74445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.22 71.23 0.73 -0.35 16 2 C 0.18 3.10 6.83 42.64 0.29 3.39 16 3 C -0.18 -3.85 9.41 22.71 0.21 -3.63 16 4 C 0.13 3.07 6.56 41.98 0.28 3.34 16 5 C 0.54 16.31 7.43 86.97 0.65 16.95 16 6 O -0.53 -19.73 9.46 -3.62 -0.03 -19.77 16 7 N -0.58 -15.46 2.97 -796.90 -2.36 -17.83 16 8 C 0.07 1.26 6.05 86.51 0.52 1.78 16 9 C -0.13 -2.01 6.10 30.82 0.19 -1.82 16 10 C -0.12 -2.08 5.88 30.62 0.18 -1.90 16 11 C -0.13 -3.19 4.76 30.67 0.15 -3.05 16 12 C 0.16 4.97 2.55 44.97 0.11 5.08 16 13 H 0.07 2.20 7.80 -2.39 -0.02 2.18 16 14 C -0.08 -3.05 1.90 -9.60 -0.02 -3.07 16 15 H 0.09 3.90 5.81 -11.86 -0.07 3.83 16 16 C -0.11 -5.14 5.77 32.06 0.18 -4.96 16 17 C 0.16 9.29 5.89 86.93 0.51 9.80 16 18 N -0.63 -35.87 3.40 -691.57 -2.35 -38.22 16 19 C -0.24 -14.57 10.27 84.03 0.86 -13.71 16 20 H 0.08 4.68 7.83 -2.91 -0.02 4.65 16 21 C -0.07 -4.38 5.49 84.86 0.47 -3.91 16 22 N -0.95 -60.87 10.09 21.65 0.22 -60.65 16 23 Si 0.99 47.97 29.55 68.60 2.03 50.00 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 27 C 0.14 6.24 5.85 86.73 0.51 6.75 16 28 N -0.50 -9.45 6.40 -189.16 -1.21 -10.66 16 29 C 0.29 4.28 12.28 180.92 2.22 6.50 16 30 N -0.52 -8.74 10.36 -188.11 -1.95 -10.68 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.77 8.10 -2.38 -0.02 0.75 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.16 3.36 7.83 -2.91 -0.02 3.34 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.15 2.67 3.89 -64.16 -0.25 2.42 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.08 2.01 6.54 -2.39 -0.02 1.99 16 43 H 0.08 3.76 5.61 -3.30 -0.02 3.74 16 44 H 0.04 1.89 7.81 -2.39 -0.02 1.87 16 45 H 0.07 4.22 5.87 -2.39 -0.01 4.20 16 46 H -0.03 -1.68 8.14 -2.39 -0.02 -1.69 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.03 1.38 6.61 -2.39 -0.02 1.37 16 49 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.24 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -77.62 378.27 3.03 -74.59 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.65 Total: 16.03 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 8.04 Total: 17.19 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -7.65 Total: -138.05 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.03 Total: -19.77 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -77.62 3.03 -74.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.796 kcal (2) G-P(sol) polarization free energy of solvation -77.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds