Wall clock time and date at job start Wed Apr 1 2020 03:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38808 * 120.42752 * 2 1 4 4 C 1.39490 * 118.26454 * 179.97438 * 3 2 1 5 5 C 1.48461 * 120.54796 * 180.02562 * 4 3 2 6 6 O 1.21475 * 119.99894 * 8.95244 * 5 4 3 7 7 N 1.34776 * 119.99811 * 188.95024 * 5 4 3 8 8 C 1.46930 * 120.63132 * 6.65387 * 7 5 4 9 9 C 1.53184 * 108.77451 * 126.38907 * 8 7 5 10 10 C 1.53038 * 109.31536 * 54.63803 * 9 8 7 11 11 C 1.53041 * 109.53728 * 298.63264 * 10 9 8 12 12 C 1.46920 * 120.63152 * 186.65137 * 7 5 4 13 13 H 1.09006 * 109.70162 * 113.74918 * 12 7 5 14 14 C 1.53002 * 109.58510 * 353.40080 * 12 7 5 15 15 H 1.08993 * 110.91740 * 53.80154 * 14 12 7 16 16 C 1.55163 * 111.00196 * 289.89489 * 14 12 7 17 17 C 1.54319 * 102.94044 * 206.42577 * 16 14 12 18 18 N 1.47017 * 107.40501 * 22.12043 * 17 16 14 19 19 C 1.36940 * 125.65110 * 181.10737 * 18 17 16 20 20 H 1.07997 * 120.00288 * 180.02562 * 19 18 17 21 21 C 1.38820 * 119.99821 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99581 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47129 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47018 * 119.99982 * 23 21 19 26 26 H 1.48494 * 109.47266 * 240.00233 * 23 21 19 27 27 C 1.47748 * 108.53114 * 1.17646 * 18 17 16 28 28 N 1.33105 * 118.90234 * 0.27514 * 4 3 2 29 29 C 1.31558 * 120.73279 * 359.44429 * 28 4 3 30 30 N 1.31909 * 121.91768 * 0.57212 * 29 28 4 31 31 H 1.09006 * 109.46744 * 89.99917 * 1 2 3 32 32 H 1.08997 * 109.47341 * 209.99897 * 1 2 3 33 33 H 1.08998 * 109.47279 * 329.99846 * 1 2 3 34 34 H 1.07999 * 120.86458 * 359.95955 * 3 2 1 35 35 H 1.09002 * 109.58412 * 6.59881 * 8 7 5 36 36 H 1.08997 * 109.70515 * 246.25078 * 8 7 5 37 37 H 1.08992 * 109.50223 * 294.68313 * 9 8 7 38 38 H 1.09005 * 109.52113 * 174.60008 * 9 8 7 39 39 H 1.08998 * 109.46519 * 178.60767 * 10 9 8 40 40 H 1.09008 * 109.45236 * 58.64310 * 10 9 8 41 41 H 1.08999 * 109.49797 * 301.41285 * 11 10 9 42 42 H 1.09003 * 109.50042 * 181.31180 * 11 10 9 43 43 H 1.09002 * 110.71868 * 88.06284 * 16 14 12 44 44 H 1.09007 * 110.71624 * 324.79078 * 16 14 12 45 45 H 1.09007 * 109.88278 * 141.61104 * 17 16 14 46 46 H 1.08997 * 109.88283 * 262.61757 * 17 16 14 47 47 H 0.96997 * 119.99474 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.29268 * 216.95423 * 27 18 17 49 49 H 1.08999 * 110.52478 * 94.68107 * 27 18 17 50 50 H 1.07995 * 119.03535 * 180.28907 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4062 2.3934 0.0011 6 8 3.8600 3.4660 0.1649 7 7 5.7406 2.3373 -0.1799 8 6 6.3968 1.0683 -0.5232 9 6 7.2352 1.2734 -1.7887 10 6 8.2000 2.4416 -1.5730 11 6 7.4033 3.7213 -1.3089 12 6 6.5666 3.5440 -0.0379 13 1 7.2273 3.4378 0.8227 14 6 5.6637 4.7638 0.1562 15 1 4.9726 4.6085 0.9846 16 6 4.8986 5.1029 -1.1504 17 6 4.6329 6.6167 -1.0123 18 7 5.6217 7.1522 -0.0652 19 6 5.7097 8.4557 0.3450 20 1 6.4756 8.7505 1.0470 21 6 4.8143 9.3984 -0.1417 22 7 3.8806 9.0390 -0.9969 23 14 4.9348 11.1767 0.4171 24 1 6.0619 11.3199 1.3733 25 1 5.1710 12.0505 -0.7601 26 1 3.6676 11.5736 1.0819 27 6 6.5035 6.0483 0.3671 28 7 4.2028 -0.0444 -0.0045 29 6 3.4954 -1.1537 0.0009 30 7 2.1764 -1.1397 0.0004 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6912 2.1441 -0.0007 35 1 5.6414 0.3039 -0.7051 36 1 7.0432 0.7553 0.2967 37 1 6.5775 1.4953 -2.6290 38 1 7.8028 0.3672 -2.0004 39 1 8.8150 2.5739 -2.4631 40 1 8.8409 2.2298 -0.7170 41 1 6.7438 3.9202 -2.1536 42 1 8.0904 4.5574 -1.1784 43 1 3.9607 4.5499 -1.2027 44 1 5.5176 4.8980 -2.0239 45 1 4.7467 7.1030 -1.9813 46 1 3.6257 6.7830 -0.6304 47 1 3.2548 9.6976 -1.3367 48 1 6.7641 6.1626 1.4194 49 1 7.4048 6.0171 -0.2450 50 1 4.0097 -2.1033 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039199543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:08 Heat of formation + Delta-G solvation = 91.075496 kcal Electronic energy + Delta-G solvation = -31651.461506 eV Core-core repulsion = 27681.594197 eV Total energy + Delta-G solvation = -3969.867310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.69666 -40.37862 -37.51092 -36.80231 -34.99322 -33.21629 -32.74615 -32.49870 -30.83328 -29.10046 -28.66751 -27.36687 -25.96251 -24.59160 -24.23488 -23.71440 -22.82488 -21.05535 -20.34139 -19.78223 -18.86917 -17.77290 -17.01989 -16.71480 -16.05183 -15.81412 -15.70762 -15.46348 -15.04782 -14.95986 -14.43139 -14.40796 -13.94471 -13.74779 -13.66459 -13.34208 -13.19973 -13.14014 -12.75218 -12.59072 -12.31091 -12.10115 -11.79474 -11.64767 -11.36771 -11.12526 -10.96574 -10.88836 -10.75167 -10.72221 -10.49056 -10.44505 -10.02589 -9.95535 -9.84231 -9.68447 -9.54087 -9.40085 -9.28649 -8.81481 -8.41924 -8.19900 -6.63560 -5.56257 -2.88648 0.28609 0.56866 2.69261 2.84178 3.47127 3.51869 3.52259 3.54820 3.65728 3.66653 4.10008 4.54878 4.61015 4.65535 4.84568 4.91892 4.95917 5.02500 5.15545 5.17015 5.21908 5.37118 5.42035 5.42849 5.52108 5.53120 5.62741 5.72641 5.84225 5.87392 5.91717 5.96262 6.05928 6.11933 6.12664 6.23035 6.30136 6.31903 6.48490 6.56623 6.64556 6.72280 6.84122 6.97584 7.10983 7.32749 7.46598 7.64037 7.72880 7.90801 8.03865 8.23973 8.43212 9.37836 9.98581 10.67599 11.54912 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003280 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.825082 B = 8535.321134 C =10266.649756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.179 3.821 3 C -0.171 4.171 4 C 0.143 3.857 5 C 0.545 3.455 6 O -0.480 6.480 7 N -0.580 5.580 8 C 0.070 3.930 9 C -0.134 4.134 10 C -0.121 4.121 11 C -0.138 4.138 12 C 0.158 3.842 13 H 0.071 0.929 14 C -0.095 4.095 15 H 0.102 0.898 16 C -0.137 4.137 17 C 0.182 3.818 18 N -0.604 5.604 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.134 3.866 28 N -0.496 5.496 29 C 0.290 3.710 30 N -0.513 5.513 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.033 0.967 46 H 0.042 0.958 47 H 0.249 0.751 48 H 0.031 0.969 49 H 0.016 0.984 50 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -24.764 -0.345 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.032 3.968 3 C -0.193 4.193 4 C -0.003 4.003 5 C 0.330 3.670 6 O -0.354 6.354 7 N -0.312 5.312 8 C -0.053 4.053 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.176 4.176 12 C 0.055 3.945 13 H 0.089 0.911 14 C -0.114 4.114 15 H 0.120 0.880 16 C -0.175 4.175 17 C 0.057 3.943 18 N -0.330 5.330 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.008 3.992 28 N -0.213 5.213 29 C 0.002 3.998 30 N -0.229 5.229 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.180 0.820 35 H 0.162 0.838 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.034 0.966 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.436 -24.786 -0.283 24.792 hybrid contribution -0.075 1.685 0.188 1.697 sum 0.361 -23.101 -0.096 23.104 Atomic orbital electron populations 1.20840 0.87188 1.04491 1.04077 1.21866 0.97971 0.87734 0.89242 1.22868 0.94656 1.01573 1.00233 1.22034 0.92342 0.92728 0.93159 1.17875 0.82349 0.86536 0.80210 1.90932 1.71295 1.26323 1.46821 1.47867 1.05417 1.10526 1.67411 1.22997 0.99198 0.86949 0.96155 1.21943 0.98329 0.98627 0.98376 1.21562 0.97693 0.95112 1.01474 1.22175 0.99097 0.97629 0.98683 1.21300 0.91884 0.84039 0.97252 0.91070 1.22831 0.96124 0.91386 1.01098 0.88010 1.23412 0.99792 0.99346 0.94925 1.21073 0.93132 0.86884 0.93201 1.44533 1.33697 1.03920 1.50857 1.19109 1.12089 0.82963 1.20951 0.90649 1.24790 0.98166 0.98018 0.99764 1.70023 1.19913 1.32255 1.34659 0.86076 0.77151 0.85104 0.77662 1.20616 1.21924 1.21886 1.21745 0.92882 0.87906 0.96710 1.68351 1.39456 0.98887 1.14635 1.25127 0.86810 0.97114 0.90703 1.68202 1.10450 1.30513 1.13734 0.89287 0.89689 0.89567 0.82000 0.83761 0.92028 0.92015 0.91224 0.92067 0.92112 0.90408 0.90142 0.90045 0.93489 0.94905 0.93973 0.94068 0.95039 0.96614 0.78245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.22 36.01 0.37 -0.32 16 2 C 0.18 1.69 6.83 -82.23 -0.56 1.13 16 3 C -0.17 -1.89 9.40 -38.90 -0.37 -2.26 16 4 C 0.14 1.78 6.63 -82.64 -0.55 1.23 16 5 C 0.54 8.13 7.32 -12.05 -0.09 8.04 16 6 O -0.48 -8.68 9.37 5.39 0.05 -8.63 16 7 N -0.58 -7.91 2.96 -166.10 -0.49 -8.40 16 8 C 0.07 0.74 5.95 -3.71 -0.02 0.72 16 9 C -0.13 -1.32 6.08 -26.62 -0.16 -1.48 16 10 C -0.12 -1.29 5.88 -26.69 -0.16 -1.44 16 11 C -0.14 -1.90 4.72 -26.61 -0.13 -2.02 16 12 C 0.16 2.36 2.79 -67.60 -0.19 2.17 16 13 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.10 -1.83 2.12 -88.46 -0.19 -2.02 16 15 H 0.10 2.18 6.02 -51.92 -0.31 1.87 16 16 C -0.14 -2.88 5.35 -24.90 -0.13 -3.01 16 17 C 0.18 4.82 5.37 -3.07 -0.02 4.80 16 18 N -0.60 -16.53 3.41 -169.81 -0.58 -17.10 16 19 C -0.22 -6.56 10.29 -15.05 -0.15 -6.71 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -28.48 10.31 55.49 0.57 -27.91 16 23 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 27 C 0.13 2.96 6.64 -2.35 -0.02 2.95 16 28 N -0.50 -5.16 6.27 -11.14 -0.07 -5.23 16 29 C 0.29 2.52 12.28 -92.26 -1.13 1.39 16 30 N -0.51 -4.99 10.36 -10.81 -0.11 -5.10 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.16 1.76 7.76 -52.49 -0.41 1.35 16 35 H 0.15 1.48 3.93 -85.27 -0.34 1.15 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.08 1.19 5.64 -51.93 -0.29 0.90 16 42 H 0.08 1.16 6.54 -51.93 -0.34 0.82 16 43 H 0.08 1.72 5.43 -52.65 -0.29 1.44 16 44 H 0.05 0.93 5.33 -51.93 -0.28 0.66 16 45 H 0.03 0.95 7.51 -51.93 -0.39 0.56 16 46 H 0.04 1.25 7.37 -51.93 -0.38 0.87 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 48 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.02 0.34 6.17 -51.93 -0.32 0.02 16 50 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -34.41 374.16 -11.14 -45.54 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.54 Total: 0.43 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -3.59 Total: 2.73 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.68 Total: -63.75 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.05 Total: -8.63 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.41 -11.14 -45.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.620 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds