Wall clock time and date at job start Wed Apr 1 2020 04:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38779 * 119.90411 * 2 1 4 4 N 1.31775 * 120.12406 * 179.71703 * 3 2 1 5 5 C 1.33035 * 119.92066 * 0.52116 * 4 3 2 6 6 C 1.48146 * 120.09136 * 179.76368 * 5 4 3 7 7 O 1.21519 * 119.99949 * 199.69820 * 6 5 4 8 8 N 1.34779 * 120.00312 * 19.69668 * 6 5 4 9 9 C 1.46935 * 120.62714 * 8.65727 * 8 6 5 10 10 C 1.53188 * 108.77580 * 233.58892 * 9 8 6 11 11 C 1.53046 * 109.31310 * 305.36440 * 10 9 8 12 12 C 1.53083 * 109.65629 * 61.30157 * 11 10 9 13 13 C 1.46923 * 120.63307 * 188.63921 * 8 6 5 14 14 H 1.09001 * 109.58385 * 246.34047 * 13 8 6 15 15 C 1.52993 * 109.58696 * 6.62315 * 13 8 6 16 16 H 1.09000 * 110.64634 * 305.11796 * 15 13 8 17 17 C 1.55162 * 110.72068 * 68.25461 * 15 13 8 18 18 C 1.55386 * 101.36367 * 153.94291 * 17 15 13 19 19 N 1.47418 * 104.87874 * 323.02170 * 18 17 15 20 20 C 1.36935 * 125.64876 * 204.16830 * 19 18 17 21 21 H 1.08004 * 120.00194 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.00190 * 359.95472 * 20 19 18 23 23 N 1.31629 * 119.99811 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00438 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47066 * 60.00120 * 24 22 20 26 26 H 1.48498 * 109.47389 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47162 * 300.00303 * 24 22 20 28 28 C 1.47021 * 108.70290 * 24.13268 * 19 18 17 29 29 C 1.39394 * 119.81108 * 359.48344 * 5 4 3 30 30 N 1.32107 * 119.88121 * 0.25285 * 29 5 4 31 31 H 1.09003 * 109.46986 * 270.02285 * 1 2 3 32 32 H 1.09007 * 109.46926 * 30.01689 * 1 2 3 33 33 H 1.08998 * 109.46781 * 150.01973 * 1 2 3 34 34 H 1.07998 * 119.93840 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.58782 * 353.37763 * 9 8 6 36 36 H 1.09007 * 109.58227 * 113.65474 * 9 8 6 37 37 H 1.08992 * 109.49746 * 65.31663 * 10 9 8 38 38 H 1.09003 * 109.49714 * 185.38666 * 10 9 8 39 39 H 1.09000 * 109.46091 * 181.38423 * 11 10 9 40 40 H 1.08998 * 109.45892 * 301.36600 * 11 10 9 41 41 H 1.08998 * 109.62179 * 178.82957 * 12 11 10 42 42 H 1.08997 * 109.38999 * 58.72167 * 12 11 10 43 43 H 1.08992 * 111.00449 * 272.12079 * 17 15 13 44 44 H 1.08998 * 110.99935 * 35.96998 * 17 15 13 45 45 H 1.09005 * 110.34289 * 204.16669 * 18 17 15 46 46 H 1.09005 * 110.34782 * 81.87630 * 18 17 15 47 47 H 0.97000 * 119.99543 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.88141 * 239.52475 * 28 19 18 49 49 H 1.08991 * 109.88444 * 118.36166 * 28 19 18 50 50 H 1.08000 * 120.05888 * 180.23723 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5167 1.2081 0.0056 5 6 4.1847 0.0576 0.0008 6 6 5.6662 0.0589 0.0018 7 8 6.2749 -0.9297 -0.3570 8 7 6.3389 1.1566 0.4007 9 6 5.6293 2.2879 1.0137 10 6 5.9848 3.5662 0.2481 11 6 7.5064 3.7258 0.2084 12 6 8.1301 2.5349 -0.5239 13 6 7.7956 1.2447 0.2312 14 1 8.2771 1.2583 1.2090 15 6 8.2927 0.0388 -0.5685 16 1 7.9762 -0.8918 -0.0974 17 6 7.7925 0.1090 -2.0356 18 6 8.8862 -0.7135 -2.7717 19 7 10.1441 -0.3722 -2.0830 20 6 11.3992 -0.4603 -2.6235 21 1 12.2615 -0.1850 -2.0344 22 6 11.5633 -0.9038 -3.9286 23 7 10.5124 -1.2392 -4.6468 24 14 13.2754 -1.0247 -4.6658 25 1 14.0954 -1.9659 -3.8613 26 1 13.1793 -1.5216 -6.0619 27 1 13.9127 0.3166 -4.6599 28 6 9.8279 0.0793 -0.7201 29 6 3.4868 -1.1490 0.0008 30 7 2.1657 -1.1452 0.0004 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6564 2.1368 -0.0004 35 1 4.5541 2.1170 0.9603 36 1 5.9321 2.3874 2.0562 37 1 5.5993 3.5001 -0.7692 38 1 5.5414 4.4261 0.7502 39 1 7.7614 4.6475 -0.3146 40 1 7.8940 3.7666 1.2263 41 1 9.2120 2.6594 -0.5701 42 1 7.7263 2.4799 -1.5348 43 1 6.8130 -0.3581 -2.1372 44 1 7.7713 1.1388 -2.3922 45 1 8.9371 -0.4226 -3.8210 46 1 8.6823 -1.7806 -2.6825 47 1 10.6271 -1.5488 -5.5589 48 1 10.1880 1.0978 -0.5740 49 1 10.2900 -0.5874 0.0079 50 1 4.0250 -2.0853 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039207164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:15 Heat of formation + Delta-G solvation = 83.666834 kcal Electronic energy + Delta-G solvation = -31666.884812 eV Core-core repulsion = 27696.696238 eV Total energy + Delta-G solvation = -3970.188573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.76031 -40.35775 -37.49943 -36.77365 -35.09302 -33.27146 -32.82678 -32.68709 -30.84991 -28.93395 -28.65632 -27.29395 -25.27116 -25.01514 -24.26873 -23.71428 -22.79117 -21.19824 -20.37774 -19.63329 -18.97429 -17.92696 -17.21216 -16.75333 -16.35800 -15.89551 -15.40883 -15.36459 -14.95790 -14.85308 -14.41503 -14.37747 -14.03283 -13.78521 -13.64536 -13.24813 -13.12667 -13.02143 -12.79099 -12.70353 -12.39060 -12.15779 -11.88413 -11.59669 -11.54519 -11.36677 -11.05225 -10.91926 -10.73776 -10.72872 -10.53859 -10.37797 -10.19176 -9.99844 -9.73075 -9.57394 -9.54933 -9.34902 -9.24670 -8.63019 -8.47754 -8.31059 -6.64149 -5.49731 -2.90944 0.12447 0.68237 2.58710 2.90150 3.40878 3.47894 3.51541 3.53346 3.66590 3.76298 4.04261 4.35610 4.58609 4.62050 4.72059 4.89596 4.95322 5.01320 5.07304 5.13242 5.18440 5.20795 5.38580 5.44360 5.50602 5.54128 5.62678 5.75937 5.80039 5.85152 5.95840 6.00941 6.05770 6.10065 6.20261 6.21652 6.24874 6.38469 6.54791 6.65643 6.76517 6.78950 6.91318 7.00008 7.07859 7.29704 7.36807 7.50928 7.73959 7.83527 8.05329 8.23480 8.53865 9.38002 9.99567 10.67415 11.53164 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.003043 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.238134 B = 9198.531337 C =10334.595611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.096 3.904 3 C 0.042 3.958 4 N -0.399 5.399 5 C 0.027 3.973 6 C 0.567 3.433 7 O -0.494 6.494 8 N -0.584 5.584 9 C 0.077 3.923 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.136 4.136 13 C 0.160 3.840 14 H 0.069 0.931 15 C -0.108 4.108 16 H 0.116 0.884 17 C -0.136 4.136 18 C 0.158 3.842 19 N -0.603 5.603 20 C -0.218 4.218 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.137 3.863 29 C 0.115 3.885 30 N -0.441 5.441 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.175 0.825 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.009 0.991 47 H 0.250 0.750 48 H 0.020 0.980 49 H 0.015 0.985 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.491 9.523 13.606 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.045 4.045 3 C -0.120 4.120 4 N -0.116 5.116 5 C -0.113 4.113 6 C 0.352 3.648 7 O -0.369 6.369 8 N -0.316 5.316 9 C -0.045 4.045 10 C -0.163 4.163 11 C -0.159 4.159 12 C -0.174 4.174 13 C 0.058 3.942 14 H 0.087 0.913 15 C -0.127 4.127 16 H 0.133 0.867 17 C -0.174 4.174 18 C 0.033 3.967 19 N -0.328 5.328 20 C -0.347 4.347 21 H 0.092 0.908 22 C -0.209 4.209 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.010 3.990 29 C -0.044 4.044 30 N -0.156 5.156 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.192 0.808 35 H 0.148 0.852 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.027 0.973 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.033 0.967 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -20.993 8.893 13.215 26.352 hybrid contribution 0.999 0.115 -0.353 1.065 sum -19.994 9.008 12.862 25.424 Atomic orbital electron populations 1.20759 0.87356 1.04346 1.03728 1.22635 0.98789 0.89740 0.93377 1.23812 0.90653 0.99490 0.98049 1.68347 1.08404 1.27817 1.07029 1.22503 0.96499 0.90813 1.01446 1.17674 0.84415 0.83918 0.78782 1.90849 1.65890 1.33557 1.46564 1.47876 1.08035 1.16216 1.59455 1.22647 1.01077 0.85522 0.95273 1.21786 0.96339 0.96882 1.01330 1.21582 0.95251 0.98518 1.00557 1.22145 1.01845 0.93113 1.00288 1.21304 0.77711 0.96481 0.98715 0.91289 1.22904 0.95109 0.97750 0.96934 0.86675 1.23366 0.99702 0.99867 0.94492 1.21914 0.81865 0.94442 0.98459 1.44474 1.03026 1.76849 1.08476 1.19036 0.83306 1.36852 0.95481 0.90778 1.24779 0.97317 1.01937 0.96894 1.69846 1.26740 1.51047 1.09449 0.86186 0.83653 0.77657 0.78204 1.21351 1.21684 1.21319 1.21424 0.92573 0.96383 0.88589 1.23840 0.89817 0.99403 0.91366 1.68477 1.08369 1.28974 1.09773 0.89612 0.89880 0.89822 0.80774 0.85218 0.92683 0.91427 0.91405 0.91950 0.92279 0.89989 0.90402 0.91872 0.92936 0.88327 0.97338 0.93916 0.96252 0.96686 0.79946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 36.01 0.37 -0.10 16 2 C 0.10 0.79 6.79 -82.27 -0.56 0.23 16 3 C 0.04 0.33 10.88 -17.38 -0.19 0.14 16 4 N -0.40 -4.21 6.66 -9.61 -0.06 -4.27 16 5 C 0.03 0.34 6.43 -82.85 -0.53 -0.19 16 6 C 0.57 8.55 6.69 -12.19 -0.08 8.47 16 7 O -0.49 -8.94 10.37 5.35 0.06 -8.88 16 8 N -0.58 -8.10 2.96 -166.21 -0.49 -8.60 16 9 C 0.08 0.84 6.11 -3.71 -0.02 0.81 16 10 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 11 C -0.12 -1.36 5.88 -26.66 -0.16 -1.52 16 12 C -0.14 -2.00 4.79 -26.59 -0.13 -2.12 16 13 C 0.16 2.48 2.72 -67.61 -0.18 2.29 16 14 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.11 -2.12 2.05 -88.79 -0.18 -2.30 16 16 H 0.12 2.43 5.61 -53.42 -0.30 2.13 16 17 C -0.14 -2.94 5.47 -24.32 -0.13 -3.08 16 18 C 0.16 4.23 5.90 -2.27 -0.01 4.22 16 19 N -0.60 -16.54 3.40 -169.78 -0.58 -17.12 16 20 C -0.22 -6.41 10.27 -15.06 -0.15 -6.56 16 21 H 0.07 2.09 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 23 N -0.92 -28.36 10.09 55.49 0.56 -27.80 16 24 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.14 3.08 6.66 -3.07 -0.02 3.06 16 29 C 0.12 1.36 10.77 -17.00 -0.18 1.18 16 30 N -0.44 -4.80 10.41 -8.94 -0.09 -4.89 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.19 8.09 -51.92 -0.42 -0.23 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 1.33 3.92 -75.99 -0.30 1.04 16 36 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.29 6.49 -51.93 -0.34 0.95 16 42 H 0.08 1.29 5.66 -51.93 -0.29 1.00 16 43 H 0.06 1.36 5.80 -51.93 -0.30 1.06 16 44 H 0.05 1.12 5.41 -51.93 -0.28 0.84 16 45 H 0.10 2.93 5.87 -51.93 -0.30 2.63 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.02 0.42 6.04 -51.93 -0.31 0.11 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.18 2.07 7.78 -52.49 -0.41 1.66 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -34.39 374.24 -9.88 -44.26 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.45 Total: 1.07 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.43 Total: 2.58 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.67 Total: -62.68 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.06 Total: -8.88 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.39 -9.88 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039207164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.930 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds