Wall clock time and date at job start Wed Apr 1 2020 04:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38779 * 119.90411 * 2 1 4 4 N 1.31775 * 120.12406 * 179.71703 * 3 2 1 5 5 C 1.33035 * 119.92066 * 0.52116 * 4 3 2 6 6 C 1.48146 * 120.09136 * 179.76368 * 5 4 3 7 7 O 1.21519 * 119.99949 * 199.69820 * 6 5 4 8 8 N 1.34779 * 120.00312 * 19.69668 * 6 5 4 9 9 C 1.46935 * 120.62714 * 8.65727 * 8 6 5 10 10 C 1.53188 * 108.77580 * 233.58892 * 9 8 6 11 11 C 1.53046 * 109.31310 * 305.36440 * 10 9 8 12 12 C 1.53083 * 109.65629 * 61.30157 * 11 10 9 13 13 C 1.46923 * 120.63307 * 188.63921 * 8 6 5 14 14 H 1.09001 * 109.58385 * 246.34047 * 13 8 6 15 15 C 1.52993 * 109.58696 * 6.62315 * 13 8 6 16 16 H 1.09000 * 110.64634 * 305.11796 * 15 13 8 17 17 C 1.55162 * 110.72068 * 68.25461 * 15 13 8 18 18 C 1.55386 * 101.36367 * 153.94291 * 17 15 13 19 19 N 1.47418 * 104.87874 * 323.02170 * 18 17 15 20 20 C 1.36935 * 125.64876 * 204.16830 * 19 18 17 21 21 H 1.08004 * 120.00194 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.00190 * 359.95472 * 20 19 18 23 23 N 1.31629 * 119.99811 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00438 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47066 * 60.00120 * 24 22 20 26 26 H 1.48498 * 109.47389 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47162 * 300.00303 * 24 22 20 28 28 C 1.47021 * 108.70290 * 24.13268 * 19 18 17 29 29 C 1.39394 * 119.81108 * 359.48344 * 5 4 3 30 30 N 1.32107 * 119.88121 * 0.25285 * 29 5 4 31 31 H 1.09003 * 109.46986 * 270.02285 * 1 2 3 32 32 H 1.09007 * 109.46926 * 30.01689 * 1 2 3 33 33 H 1.08998 * 109.46781 * 150.01973 * 1 2 3 34 34 H 1.07998 * 119.93840 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.58782 * 353.37763 * 9 8 6 36 36 H 1.09007 * 109.58227 * 113.65474 * 9 8 6 37 37 H 1.08992 * 109.49746 * 65.31663 * 10 9 8 38 38 H 1.09003 * 109.49714 * 185.38666 * 10 9 8 39 39 H 1.09000 * 109.46091 * 181.38423 * 11 10 9 40 40 H 1.08998 * 109.45892 * 301.36600 * 11 10 9 41 41 H 1.08998 * 109.62179 * 178.82957 * 12 11 10 42 42 H 1.08997 * 109.38999 * 58.72167 * 12 11 10 43 43 H 1.08992 * 111.00449 * 272.12079 * 17 15 13 44 44 H 1.08998 * 110.99935 * 35.96998 * 17 15 13 45 45 H 1.09005 * 110.34289 * 204.16669 * 18 17 15 46 46 H 1.09005 * 110.34782 * 81.87630 * 18 17 15 47 47 H 0.97000 * 119.99543 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.88141 * 239.52475 * 28 19 18 49 49 H 1.08991 * 109.88444 * 118.36166 * 28 19 18 50 50 H 1.08000 * 120.05888 * 180.23723 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5167 1.2081 0.0056 5 6 4.1847 0.0576 0.0008 6 6 5.6662 0.0589 0.0018 7 8 6.2749 -0.9297 -0.3570 8 7 6.3389 1.1566 0.4007 9 6 5.6293 2.2879 1.0137 10 6 5.9848 3.5662 0.2481 11 6 7.5064 3.7258 0.2084 12 6 8.1301 2.5349 -0.5239 13 6 7.7956 1.2447 0.2312 14 1 8.2771 1.2583 1.2090 15 6 8.2927 0.0388 -0.5685 16 1 7.9762 -0.8918 -0.0974 17 6 7.7925 0.1090 -2.0356 18 6 8.8862 -0.7135 -2.7717 19 7 10.1441 -0.3722 -2.0830 20 6 11.3992 -0.4603 -2.6235 21 1 12.2615 -0.1850 -2.0344 22 6 11.5633 -0.9038 -3.9286 23 7 10.5124 -1.2392 -4.6468 24 14 13.2754 -1.0247 -4.6658 25 1 14.0954 -1.9659 -3.8613 26 1 13.1793 -1.5216 -6.0619 27 1 13.9127 0.3166 -4.6599 28 6 9.8279 0.0793 -0.7201 29 6 3.4868 -1.1490 0.0008 30 7 2.1657 -1.1452 0.0004 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6564 2.1368 -0.0004 35 1 4.5541 2.1170 0.9603 36 1 5.9321 2.3874 2.0562 37 1 5.5993 3.5001 -0.7692 38 1 5.5414 4.4261 0.7502 39 1 7.7614 4.6475 -0.3146 40 1 7.8940 3.7666 1.2263 41 1 9.2120 2.6594 -0.5701 42 1 7.7263 2.4799 -1.5348 43 1 6.8130 -0.3581 -2.1372 44 1 7.7713 1.1388 -2.3922 45 1 8.9371 -0.4226 -3.8210 46 1 8.6823 -1.7806 -2.6825 47 1 10.6271 -1.5488 -5.5589 48 1 10.1880 1.0978 -0.5740 49 1 10.2900 -0.5874 0.0079 50 1 4.0250 -2.0853 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039207164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:14 Heat of formation + Delta-G solvation = 61.367124 kcal Electronic energy + Delta-G solvation = -31667.851800 eV Core-core repulsion = 27696.696238 eV Total energy + Delta-G solvation = -3971.155561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.64181 -41.47879 -38.91200 -38.22463 -35.98392 -34.79292 -33.86366 -33.68061 -32.52573 -30.65127 -29.56049 -28.91497 -26.75126 -25.89918 -25.71999 -24.65883 -23.94986 -22.35999 -22.05401 -21.19490 -20.17494 -19.04393 -18.66089 -18.14545 -17.23552 -17.03210 -16.83863 -16.67374 -16.29775 -15.92092 -15.84359 -15.62029 -15.19827 -14.96061 -14.79188 -14.38685 -14.30612 -14.18241 -13.73900 -13.66236 -13.52168 -13.38777 -13.23583 -13.06007 -12.90702 -12.75710 -12.64783 -12.32774 -12.24689 -12.13325 -11.99233 -11.90379 -11.67921 -11.56257 -11.43768 -11.20999 -11.08708 -10.72532 -10.42884 -10.24697 -9.77355 -9.49737 -8.86945 -7.75831 -5.21579 -0.67842 -0.06013 1.43262 1.48424 1.54690 1.58537 1.85236 2.49551 2.58013 2.88818 3.03967 3.31514 3.32562 3.50116 3.70990 3.82378 3.88140 3.93894 4.02524 4.10234 4.10976 4.23769 4.31189 4.33238 4.41766 4.47860 4.59503 4.68674 4.74478 4.80106 4.83452 4.86103 4.94097 4.96297 5.02759 5.08603 5.14788 5.19552 5.22635 5.30015 5.31342 5.40477 5.43900 5.52434 5.55212 5.64633 5.80656 5.83044 6.04625 6.28737 6.37424 6.60570 7.09534 7.10200 7.78657 8.46083 9.25981 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.003043 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.238134 B = 9198.531337 C =10334.595611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.104 3.896 3 C 0.055 3.945 4 N -0.404 5.404 5 C 0.006 3.994 6 C 0.562 3.438 7 O -0.540 6.540 8 N -0.583 5.583 9 C 0.074 3.926 10 C -0.119 4.119 11 C -0.115 4.115 12 C -0.132 4.132 13 C 0.166 3.834 14 H 0.087 0.913 15 C -0.092 4.092 16 H 0.101 0.899 17 C -0.113 4.113 18 C 0.165 3.835 19 N -0.623 5.623 20 C -0.239 4.239 21 H 0.083 0.917 22 C -0.074 4.074 23 N -0.953 5.953 24 Si 0.986 3.014 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.132 3.868 29 C 0.103 3.897 30 N -0.463 5.463 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.140 0.860 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.067 0.933 46 H -0.031 1.031 47 H 0.245 0.755 48 H 0.037 0.963 49 H 0.012 0.988 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.444 12.657 15.449 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.039 4.039 3 C -0.109 4.109 4 N -0.122 5.122 5 C -0.131 4.131 6 C 0.348 3.652 7 O -0.418 6.418 8 N -0.314 5.314 9 C -0.047 4.047 10 C -0.157 4.157 11 C -0.152 4.152 12 C -0.170 4.170 13 C 0.063 3.937 14 H 0.104 0.896 15 C -0.110 4.110 16 H 0.118 0.882 17 C -0.151 4.151 18 C 0.039 3.961 19 N -0.349 5.349 20 C -0.368 4.368 21 H 0.101 0.899 22 C -0.265 4.265 23 N -0.603 5.603 24 Si 0.813 3.187 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.007 3.993 29 C -0.055 4.055 30 N -0.178 5.178 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.239 0.761 35 H 0.157 0.843 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.085 0.915 46 H -0.013 1.013 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.030 0.970 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -22.927 12.052 15.108 29.986 hybrid contribution 1.415 -0.846 -0.894 1.876 sum -21.511 11.206 14.214 28.113 Atomic orbital electron populations 1.20944 0.84302 1.05571 1.05189 1.23410 1.00664 0.89142 0.90721 1.24595 0.89593 1.01155 0.95524 1.68275 1.09830 1.26659 1.07386 1.21971 0.94993 0.91805 1.04368 1.18086 0.85709 0.83477 0.77893 1.90814 1.67191 1.35106 1.48691 1.47977 1.07297 1.16946 1.59144 1.22916 1.01387 0.84472 0.95941 1.21766 0.95462 0.97613 1.00840 1.21557 0.95877 0.96870 1.00945 1.22061 1.01183 0.94377 0.99356 1.21132 0.79170 0.94648 0.98730 0.89566 1.22694 0.92800 0.99582 0.95952 0.88169 1.23098 0.97717 0.98851 0.95396 1.21640 0.83926 0.92929 0.97577 1.44774 1.02668 1.76941 1.10469 1.19490 0.84421 1.36854 0.96054 0.89935 1.25745 1.01585 1.01847 0.97358 1.70129 1.29005 1.51800 1.09372 0.85043 0.78650 0.78146 0.76827 1.20454 1.21958 1.19824 1.21627 0.94796 0.96765 0.86140 1.23697 0.90512 0.99040 0.92210 1.68524 1.07735 1.30731 1.10844 0.87746 0.86775 0.90488 0.76096 0.84313 0.90974 0.92843 0.88135 0.90955 0.90618 0.91270 0.92843 0.92005 0.92447 0.91546 1.01271 0.94495 0.94517 0.96969 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.19 71.24 0.73 0.21 16 2 C 0.10 1.41 6.79 42.65 0.29 1.70 16 3 C 0.06 0.65 10.88 84.83 0.92 1.57 16 4 N -0.40 -7.66 6.66 -184.33 -1.23 -8.89 16 5 C 0.01 0.16 6.43 41.87 0.27 0.42 16 6 C 0.56 17.38 6.69 86.87 0.58 17.97 16 7 O -0.54 -20.87 10.37 -3.78 -0.04 -20.91 16 8 N -0.58 -15.74 2.96 -798.06 -2.36 -18.10 16 9 C 0.07 1.39 6.11 86.36 0.53 1.92 16 10 C -0.12 -2.00 6.08 30.67 0.19 -1.82 16 11 C -0.11 -2.24 5.88 30.64 0.18 -2.06 16 12 C -0.13 -3.74 4.79 30.69 0.15 -3.60 16 13 C 0.17 5.05 2.72 44.97 0.12 5.18 16 14 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 15 C -0.09 -3.72 2.05 -9.61 -0.02 -3.74 16 16 H 0.10 4.47 5.61 -26.03 -0.15 4.33 16 17 C -0.11 -5.15 5.47 32.16 0.18 -4.97 16 18 C 0.16 9.45 5.90 87.02 0.51 9.97 16 19 N -0.62 -35.74 3.40 -691.05 -2.35 -38.09 16 20 C -0.24 -14.47 10.27 84.03 0.86 -13.61 16 21 H 0.08 4.72 7.83 -2.91 -0.02 4.69 16 22 C -0.07 -4.47 5.49 84.86 0.47 -4.00 16 23 N -0.95 -61.42 10.09 21.65 0.22 -61.20 16 24 Si 0.99 48.32 29.55 68.60 2.03 50.35 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 28 C 0.13 6.13 6.66 86.73 0.58 6.71 16 29 C 0.10 2.54 10.77 84.93 0.91 3.46 16 30 N -0.46 -9.79 10.41 -182.21 -1.90 -11.69 16 31 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.11 -0.07 8.09 -2.38 -0.02 -0.09 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 35 H 0.14 2.43 3.92 -49.89 -0.20 2.24 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 2.13 6.49 -2.39 -0.02 2.11 16 42 H 0.05 1.78 5.66 -2.39 -0.01 1.76 16 43 H 0.06 2.86 5.80 -2.39 -0.01 2.84 16 44 H 0.06 2.56 5.41 -2.39 -0.01 2.55 16 45 H 0.07 4.24 5.87 -2.38 -0.01 4.23 16 46 H -0.03 -1.95 8.14 -2.38 -0.02 -1.97 16 47 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 48 H 0.04 1.59 6.04 -2.38 -0.01 1.58 16 49 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.17 4.36 7.78 -2.91 -0.02 4.34 16 Total: -1.00 -80.81 374.24 2.46 -78.35 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.64 Total: 14.88 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 7.44 Total: 15.29 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -7.61 Total: -137.97 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.04 Total: -20.91 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -80.81 2.46 -78.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039207164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.721 kcal (2) G-P(sol) polarization free energy of solvation -80.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds