Wall clock time and date at job start Wed Apr 1 2020 04:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38776 * 119.90521 * 2 1 4 4 N 1.31769 * 120.12187 * 179.97438 * 3 2 1 5 5 C 1.33035 * 119.92710 * 0.02562 * 4 3 2 6 6 C 1.48155 * 120.09512 * 179.97438 * 5 4 3 7 7 O 1.21514 * 119.99669 * 189.38028 * 6 5 4 8 8 N 1.34779 * 119.99818 * 9.65606 * 6 5 4 9 9 C 1.46929 * 120.63089 * 7.07590 * 8 6 5 10 10 C 1.53622 * 108.54122 * 126.37034 * 9 8 6 11 11 C 1.53044 * 109.24216 * 54.85366 * 10 9 8 12 12 C 1.53034 * 109.54062 * 298.51021 * 11 10 9 13 13 C 1.46921 * 120.62734 * 187.35575 * 8 6 5 14 14 H 1.09007 * 109.58234 * 113.79881 * 13 8 6 15 15 C 1.52999 * 109.59011 * 353.51869 * 13 8 6 16 16 H 1.09000 * 110.88826 * 50.51125 * 15 13 8 17 17 C 1.55164 * 111.00224 * 286.59185 * 15 13 8 18 18 C 1.54316 * 102.93934 * 206.42118 * 17 15 13 19 19 N 1.47020 * 107.27457 * 22.19529 * 18 17 15 20 20 C 1.36939 * 125.65177 * 181.01922 * 19 18 17 21 21 H 1.07998 * 120.00251 * 180.02562 * 20 19 18 22 22 C 1.38817 * 119.99939 * 0.04518 * 20 19 18 23 23 N 1.31623 * 119.99855 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47187 * 89.99962 * 24 22 20 26 26 H 1.48504 * 109.47071 * 209.99755 * 24 22 20 27 27 H 1.48499 * 109.47186 * 329.99683 * 24 22 20 28 28 C 1.47422 * 108.70348 * 1.05564 * 19 18 17 29 29 C 1.39398 * 119.81027 * 0.24587 * 5 4 3 30 30 N 1.32112 * 119.90040 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47332 * 90.00320 * 1 2 3 32 32 H 1.09007 * 109.47275 * 210.00752 * 1 2 3 33 33 H 1.09001 * 109.47182 * 329.99832 * 1 2 3 34 34 H 1.07992 * 119.93843 * 359.97438 * 3 2 1 35 35 H 1.08992 * 109.58452 * 246.20130 * 9 8 6 36 36 H 1.09001 * 109.58472 * 6.62673 * 9 8 6 37 37 H 1.09006 * 109.63074 * 294.86442 * 10 9 8 38 38 H 1.08992 * 109.43142 * 174.72556 * 10 9 8 39 39 H 1.08998 * 109.45716 * 178.49253 * 11 10 9 40 40 H 1.08997 * 109.44395 * 58.52617 * 11 10 9 41 41 H 1.09000 * 109.49874 * 301.41599 * 12 11 10 42 42 H 1.08995 * 109.52458 * 181.33030 * 12 11 10 43 43 H 1.08999 * 110.71322 * 324.78549 * 17 15 13 44 44 H 1.08994 * 110.71644 * 88.05898 * 17 15 13 45 45 H 1.08998 * 109.88475 * 262.77284 * 18 17 15 46 46 H 1.09001 * 110.00919 * 141.67748 * 18 17 15 47 47 H 0.96995 * 120.00253 * 179.97438 * 23 22 20 48 48 H 1.09001 * 110.37148 * 217.03778 * 28 19 18 49 49 H 1.08998 * 110.36801 * 94.71468 * 28 19 18 50 50 H 1.08004 * 120.06104 * 179.72698 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2030 0.0000 4 7 3.5165 1.2080 0.0005 5 6 4.1846 0.0575 0.0005 6 6 5.6662 0.0588 0.0005 7 8 6.2746 -0.9790 -0.1710 8 7 6.3390 1.2101 0.1963 9 6 5.6257 2.4409 0.5638 10 6 6.2633 3.0128 1.8391 11 6 7.7650 3.2011 1.6115 12 6 8.4118 1.8460 1.3161 13 6 7.7991 1.2595 0.0403 14 1 8.0544 1.8904 -0.8111 15 6 8.3387 -0.1538 -0.1886 16 1 7.7879 -0.6560 -0.9840 17 6 8.3023 -0.9822 1.1229 18 6 9.4321 -2.0121 0.9125 19 7 10.3482 -1.4557 -0.0939 20 6 11.4724 -2.0709 -0.5766 21 1 12.0824 -1.5764 -1.3181 22 6 11.8278 -3.3302 -0.1132 23 7 11.0844 -3.9328 0.7905 24 14 13.3608 -4.1696 -0.7722 25 1 14.5270 -3.8031 0.0709 26 1 13.1710 -5.6421 -0.7414 27 1 13.6033 -3.7310 -2.1701 28 6 9.8566 -0.1256 -0.4967 29 6 3.4867 -1.1491 -0.0052 30 7 2.1655 -1.1453 0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5140 33 1 -0.3633 0.8900 0.5139 34 1 1.6564 2.1367 -0.0004 35 1 5.7075 3.1661 -0.2457 36 1 4.5759 2.2134 0.7488 37 1 6.1047 2.3236 2.6686 38 1 5.8072 3.9748 2.0725 39 1 8.2164 3.6318 2.5051 40 1 7.9226 3.8708 0.7661 41 1 8.2329 1.1678 2.1505 42 1 9.4849 1.9770 1.1773 43 1 8.5131 -0.3490 1.9847 44 1 7.3407 -1.4824 1.2364 45 1 9.0142 -2.9527 0.5537 46 1 9.9657 -2.1768 1.8486 47 1 11.3324 -4.8130 1.1140 48 1 10.0246 0.0346 -1.5617 49 1 10.3477 0.6531 0.0869 50 1 4.0249 -2.0855 -0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039207166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:23 Heat of formation + Delta-G solvation = 88.518632 kcal Electronic energy + Delta-G solvation = -31554.291254 eV Core-core repulsion = 27584.313070 eV Total energy + Delta-G solvation = -3969.978183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.75567 -40.35135 -37.48001 -36.79775 -35.12337 -33.26199 -32.81020 -32.69756 -30.85368 -28.93481 -28.62007 -27.31641 -25.28478 -25.03855 -24.21056 -23.69439 -22.85478 -21.18673 -20.41519 -19.76787 -18.85669 -17.93707 -17.05327 -16.70197 -16.35320 -15.90594 -15.60130 -15.31862 -15.01028 -14.90757 -14.43194 -14.38818 -13.94121 -13.69204 -13.54117 -13.27318 -13.10490 -13.08260 -12.81165 -12.78770 -12.33324 -12.14696 -11.97209 -11.67507 -11.57050 -11.45990 -11.11898 -10.88624 -10.73610 -10.71967 -10.48033 -10.40525 -9.98526 -9.93288 -9.68036 -9.63183 -9.51671 -9.33780 -9.22584 -8.79109 -8.38629 -8.20231 -6.61242 -5.54037 -2.86497 0.11894 0.67631 2.63255 2.89042 3.47940 3.48946 3.53263 3.55775 3.64352 3.72879 4.04295 4.36431 4.59068 4.63891 4.71895 4.87170 4.91704 4.98048 5.07234 5.13785 5.16499 5.19269 5.38523 5.44299 5.50731 5.52958 5.64623 5.71986 5.84862 5.86837 5.91474 5.96871 6.06876 6.12422 6.13734 6.24552 6.26360 6.32339 6.51353 6.66408 6.74230 6.77173 6.86077 7.00113 7.12339 7.29911 7.37605 7.52470 7.74761 7.93338 8.06309 8.26843 8.45879 9.40118 10.01200 10.69768 11.57091 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.003068 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.924144 B = 9125.277293 C =10596.559706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.095 3.905 3 C 0.041 3.959 4 N -0.402 5.402 5 C 0.028 3.972 6 C 0.556 3.444 7 O -0.486 6.486 8 N -0.584 5.584 9 C 0.075 3.925 10 C -0.135 4.135 11 C -0.120 4.120 12 C -0.138 4.138 13 C 0.159 3.841 14 H 0.071 0.929 15 C -0.099 4.099 16 H 0.108 0.892 17 C -0.135 4.135 18 C 0.182 3.818 19 N -0.604 5.604 20 C -0.223 4.223 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.135 3.865 29 C 0.117 3.883 30 N -0.440 5.440 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.062 0.938 36 H 0.140 0.860 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.034 0.966 47 H 0.250 0.750 48 H 0.031 0.969 49 H 0.014 0.986 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.558 16.524 1.087 27.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.046 4.046 3 C -0.121 4.121 4 N -0.119 5.119 5 C -0.112 4.112 6 C 0.341 3.659 7 O -0.361 6.361 8 N -0.316 5.316 9 C -0.047 4.047 10 C -0.173 4.173 11 C -0.158 4.158 12 C -0.176 4.176 13 C 0.056 3.944 14 H 0.088 0.912 15 C -0.118 4.118 16 H 0.126 0.874 17 C -0.173 4.173 18 C 0.057 3.943 19 N -0.329 5.329 20 C -0.352 4.352 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.009 3.991 29 C -0.043 4.043 30 N -0.155 5.155 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.032 0.968 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -22.060 15.718 1.018 27.106 hybrid contribution 0.954 -0.255 -0.272 1.024 sum -21.107 15.463 0.746 26.175 Atomic orbital electron populations 1.20755 0.87385 1.04265 1.03791 1.22635 0.98787 0.89756 0.93448 1.23836 0.90794 0.99489 0.98001 1.68412 1.08275 1.27568 1.07652 1.22555 0.96568 0.90776 1.01254 1.17712 0.84361 0.84353 0.79464 1.90934 1.65705 1.31838 1.47593 1.47886 1.07583 1.08960 1.67127 1.22973 1.00249 0.85577 0.95937 1.22025 0.96242 1.00796 0.98244 1.21556 0.95250 0.97591 1.01415 1.22183 1.00532 0.96213 0.98685 1.21296 0.77381 0.98623 0.97069 0.91154 1.22942 0.96012 0.91805 1.01085 0.87426 1.23278 1.00476 0.98409 0.95110 1.21075 0.87615 0.93335 0.92248 1.44451 1.27017 1.14660 1.46820 1.19059 0.99353 0.98536 1.18256 0.90722 1.24791 0.99055 0.97393 0.99485 1.70008 1.38755 1.15194 1.32889 0.86154 0.82769 0.78820 0.78246 1.21799 1.21791 1.20830 1.21673 0.91591 0.89151 0.96733 1.23892 0.89733 0.99580 0.91061 1.68500 1.08422 1.28939 1.09655 0.89582 0.89838 0.89926 0.80802 0.91992 0.84417 0.91939 0.91305 0.92064 0.92127 0.90317 0.90205 0.93333 0.90625 0.93976 0.94825 0.94004 0.95066 0.96829 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 36.00 0.37 -0.09 16 2 C 0.10 0.77 6.79 -82.27 -0.56 0.21 16 3 C 0.04 0.30 10.88 -17.38 -0.19 0.11 16 4 N -0.40 -4.08 6.30 -9.61 -0.06 -4.14 16 5 C 0.03 0.35 6.58 -82.84 -0.54 -0.19 16 6 C 0.56 8.33 7.38 -12.19 -0.09 8.24 16 7 O -0.49 -8.87 9.46 5.35 0.05 -8.82 16 8 N -0.58 -7.97 2.96 -165.95 -0.49 -8.46 16 9 C 0.08 0.80 5.94 -3.49 -0.02 0.78 16 10 C -0.13 -1.32 6.10 -26.39 -0.16 -1.48 16 11 C -0.12 -1.28 5.88 -26.69 -0.16 -1.44 16 12 C -0.14 -1.91 4.69 -26.61 -0.12 -2.03 16 13 C 0.16 2.39 2.76 -67.60 -0.19 2.21 16 14 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 15 C -0.10 -1.93 2.11 -88.47 -0.19 -2.11 16 16 H 0.11 2.33 5.79 -52.74 -0.31 2.02 16 17 C -0.14 -2.85 5.43 -24.90 -0.14 -2.99 16 18 C 0.18 4.86 5.38 -3.07 -0.02 4.84 16 19 N -0.60 -16.62 3.39 -170.08 -0.58 -17.20 16 20 C -0.22 -6.62 10.28 -15.06 -0.15 -6.78 16 21 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 23 N -0.92 -28.69 10.31 55.49 0.57 -28.12 16 24 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.14 3.01 6.62 -2.53 -0.02 3.00 16 29 C 0.12 1.41 10.77 -17.00 -0.18 1.23 16 30 N -0.44 -4.85 10.41 -8.94 -0.09 -4.94 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.17 8.09 -51.93 -0.42 -0.25 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.14 1.40 3.98 -84.51 -0.34 1.06 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.21 5.62 -51.93 -0.29 0.91 16 42 H 0.08 1.16 6.67 -51.93 -0.35 0.81 16 43 H 0.05 0.97 5.24 -51.93 -0.27 0.69 16 44 H 0.08 1.61 5.72 -51.93 -0.30 1.31 16 45 H 0.04 1.26 7.38 -51.93 -0.38 0.88 16 46 H 0.03 0.98 7.50 -51.93 -0.39 0.59 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.01 0.30 6.37 -51.93 -0.33 -0.03 16 50 H 0.19 2.22 7.68 -52.48 -0.40 1.82 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -34.88 374.48 -9.98 -44.87 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.55 Total: -0.10 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.45 Total: 3.07 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.65 Total: -62.86 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.05 Total: -8.82 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.88 -9.98 -44.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039207166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.384 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds