Wall clock time and date at job start Wed Apr 1 2020 03:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38821 * 120.42331 * 2 1 4 4 C 1.38774 * 118.50861 * 180.02562 * 3 2 1 5 5 N 1.32119 * 119.16891 * 0.25402 * 4 3 2 6 6 C 1.32451 * 120.76717 * 359.48610 * 5 4 3 7 7 C 1.48540 * 119.18642 * 180.26490 * 6 5 4 8 8 O 1.21471 * 119.99946 * 213.22249 * 7 6 5 9 9 N 1.34769 * 120.00004 * 33.22637 * 7 6 5 10 10 C 1.46931 * 120.63136 * 6.71795 * 9 7 6 11 11 C 1.53193 * 108.77254 * 126.37191 * 10 9 7 12 12 C 1.53042 * 109.31521 * 54.63737 * 11 10 9 13 13 C 1.53041 * 109.53463 * 298.63606 * 12 11 10 14 14 C 1.46929 * 120.62965 * 186.44509 * 9 7 6 15 15 H 1.08998 * 109.58717 * 113.84462 * 14 9 7 16 16 C 1.52999 * 109.58851 * 353.41418 * 14 9 7 17 17 H 1.09006 * 110.88070 * 315.31169 * 16 14 9 18 18 C 1.55156 * 111.00443 * 79.18782 * 16 14 9 19 19 C 1.54325 * 102.94038 * 153.57729 * 18 16 14 20 20 N 1.47025 * 107.26982 * 337.81076 * 19 18 16 21 21 C 1.36932 * 125.64215 * 178.90182 * 20 19 18 22 22 H 1.08001 * 120.00076 * 180.02562 * 21 20 19 23 23 C 1.38818 * 120.00490 * 0.02562 * 21 20 19 24 24 N 1.31618 * 119.99712 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00070 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47151 * 120.00044 * 25 23 21 28 28 H 1.48501 * 109.46821 * 239.99961 * 25 23 21 29 29 C 1.47459 * 108.72278 * 358.97394 * 20 19 18 30 30 N 1.32105 * 120.41672 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47049 * 89.99734 * 1 2 3 32 32 H 1.09001 * 109.47681 * 210.00112 * 1 2 3 33 33 H 1.09005 * 109.47388 * 330.00041 * 1 2 3 34 34 H 1.08003 * 120.74478 * 0.02562 * 3 2 1 35 35 H 1.08007 * 120.41457 * 179.97438 * 4 3 2 36 36 H 1.08998 * 109.58986 * 246.15546 * 10 9 7 37 37 H 1.09000 * 109.58386 * 6.58554 * 10 9 7 38 38 H 1.09003 * 109.49887 * 174.58772 * 11 10 9 39 39 H 1.08996 * 109.50122 * 294.65080 * 11 10 9 40 40 H 1.08998 * 109.45789 * 58.65148 * 12 11 10 41 41 H 1.08998 * 109.45839 * 178.61313 * 12 11 10 42 42 H 1.09003 * 109.49394 * 181.31972 * 13 12 11 43 43 H 1.09000 * 109.49594 * 301.37622 * 13 12 11 44 44 H 1.08997 * 110.72270 * 271.94429 * 18 16 14 45 45 H 1.09007 * 110.71556 * 35.21641 * 18 16 14 46 46 H 1.08998 * 109.88108 * 97.22892 * 19 18 16 47 47 H 1.08999 * 109.88002 * 218.23810 * 19 18 16 48 48 H 0.97004 * 119.99979 * 180.02562 * 24 23 21 49 49 H 1.08998 * 110.35113 * 265.25052 * 29 20 19 50 50 H 1.08997 * 110.40226 * 142.91653 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1507 -0.0005 5 7 4.2019 -0.0238 -0.0062 6 6 3.5005 -1.1473 -0.0010 7 6 4.2169 -2.4485 -0.0016 8 8 3.7364 -3.4061 -0.5741 9 7 5.3999 -2.5667 0.6331 10 6 5.9236 -1.4647 1.4517 11 6 6.2495 -2.0006 2.8494 12 6 7.1967 -3.1963 2.7249 13 6 6.5132 -4.3097 1.9279 14 6 6.1876 -3.8023 0.5244 15 1 7.1145 -3.5987 -0.0117 16 6 5.3790 -4.8616 -0.2273 17 1 4.3504 -4.8927 0.1322 18 6 5.4259 -4.6143 -1.7583 19 6 5.2041 -6.0251 -2.3431 20 7 5.5819 -6.9932 -1.3030 21 6 5.5106 -8.3558 -1.4174 22 1 5.8127 -8.9836 -0.5921 23 6 5.0501 -8.9305 -2.5941 24 7 4.6824 -8.1656 -3.6001 25 14 4.9522 -10.7895 -2.7498 26 1 5.4209 -11.4172 -1.4883 27 1 3.5466 -11.1910 -3.0107 28 1 5.8120 -11.2379 -3.8745 29 6 6.0486 -6.2540 -0.1155 30 7 2.1758 -1.1392 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6891 2.1432 0.0004 35 1 4.1745 2.0633 -0.0010 36 1 6.8286 -1.0667 0.9928 37 1 5.1734 -0.6776 1.5279 38 1 6.7281 -1.2171 3.4370 39 1 5.3295 -2.3145 3.3424 40 1 8.1062 -2.8870 2.2100 41 1 7.4497 -3.5641 3.7193 42 1 7.1793 -5.1698 1.8597 43 1 5.5910 -4.6028 2.4297 44 1 4.6264 -3.9398 -2.0646 45 1 6.3983 -4.2219 -2.0559 46 1 4.1549 -6.1560 -2.6079 47 1 5.8289 -6.1629 -3.2256 48 1 4.3602 -8.5671 -4.4223 49 1 7.1340 -6.1554 -0.1327 50 1 5.7270 -6.7575 0.7962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039221195.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:14 Heat of formation + Delta-G solvation = 54.419747 kcal Electronic energy + Delta-G solvation = -31526.892281 eV Core-core repulsion = 27555.435459 eV Total energy + Delta-G solvation = -3971.456822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.55036 -41.40738 -38.79826 -38.35504 -35.71942 -34.87048 -33.96296 -33.47112 -32.58731 -30.90346 -29.53962 -28.79030 -27.45403 -26.29949 -25.33554 -24.08542 -24.01186 -22.40969 -21.66186 -21.18448 -20.64124 -18.88300 -18.74516 -18.14578 -17.28506 -16.95381 -16.87337 -16.53087 -16.41836 -15.72953 -15.69177 -15.55379 -15.06213 -14.97128 -14.73913 -14.34325 -14.21364 -14.07432 -14.03743 -13.79249 -13.72322 -13.60064 -13.25712 -13.18733 -12.84855 -12.79243 -12.35090 -12.23305 -12.10223 -11.98014 -11.89314 -11.76336 -11.72778 -11.55910 -11.44677 -11.27571 -11.13907 -10.74166 -10.54651 -10.31431 -10.12146 -9.53533 -8.88205 -7.83544 -5.20660 -0.52359 0.06333 1.41987 1.45615 1.51197 1.55903 1.63177 2.49136 2.63120 2.87954 3.12962 3.33107 3.55228 3.57791 3.70004 3.84903 3.88530 3.97725 4.06743 4.11746 4.19947 4.24137 4.30520 4.34386 4.43868 4.56617 4.60133 4.64216 4.69389 4.73910 4.78349 4.81573 4.90400 4.94694 4.99137 5.04817 5.07880 5.11798 5.16739 5.20199 5.28408 5.38718 5.43798 5.47565 5.52880 5.69098 5.73155 5.81469 5.94193 6.18861 6.29100 6.85852 7.08769 7.12581 7.77921 8.45675 9.27466 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.003252 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.461340 B = 8607.306256 C =10196.042527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.147 3.853 3 C -0.189 4.189 4 C 0.138 3.862 5 N -0.500 5.500 6 C 0.271 3.729 7 C 0.562 3.438 8 O -0.523 6.523 9 N -0.583 5.583 10 C 0.107 3.893 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.128 4.128 14 C 0.168 3.832 15 H 0.084 0.916 16 C -0.080 4.080 17 H 0.081 0.919 18 C -0.116 4.116 19 C 0.196 3.804 20 N -0.628 5.628 21 C -0.241 4.241 22 H 0.086 0.914 23 C -0.076 4.076 24 N -0.956 5.956 25 Si 0.986 3.014 26 H -0.261 1.261 27 H -0.293 1.293 28 H -0.289 1.289 29 C 0.138 3.862 30 N -0.519 5.519 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.200 0.800 35 H 0.221 0.779 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.055 0.945 46 H -0.006 1.006 47 H 0.000 1.000 48 H 0.244 0.756 49 H 0.030 0.970 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 28.624 15.673 32.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.210 4.210 4 C -0.026 4.026 5 N -0.218 5.218 6 C 0.001 3.999 7 C 0.346 3.654 8 O -0.398 6.398 9 N -0.315 5.315 10 C -0.014 4.014 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.166 4.166 14 C 0.065 3.935 15 H 0.102 0.898 16 C -0.099 4.099 17 H 0.099 0.901 18 C -0.154 4.154 19 C 0.071 3.929 20 N -0.354 5.354 21 C -0.370 4.370 22 H 0.104 0.896 23 C -0.268 4.268 24 N -0.606 5.606 25 Si 0.813 3.187 26 H -0.185 1.185 27 H -0.221 1.221 28 H -0.216 1.216 29 C 0.013 3.987 30 N -0.237 5.237 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.217 0.783 35 H 0.238 0.762 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.012 0.988 47 H 0.018 0.982 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.143 27.067 15.241 31.063 hybrid contribution -0.893 -0.727 -0.967 1.504 sum -1.036 26.339 14.274 29.976 Atomic orbital electron populations 1.20930 0.85503 1.05227 1.04595 1.22534 0.99370 0.87917 0.89948 1.23473 0.96506 1.01231 0.99775 1.24200 0.93228 0.96199 0.88997 1.68528 1.41103 0.99030 1.13139 1.22608 0.87593 0.93174 0.96506 1.17908 0.81640 0.85700 0.80109 1.90892 1.67060 1.37395 1.44450 1.47901 1.18633 1.17038 1.47966 1.22215 1.00984 0.87867 0.90315 1.21978 0.99858 0.99165 0.95966 1.21525 0.98417 0.94324 1.00788 1.21919 1.01276 0.99760 0.93689 1.21194 0.93010 0.82143 0.97165 0.89837 1.22629 0.99535 0.93108 0.94639 0.90086 1.22977 0.99735 0.96446 0.96205 1.20727 0.95587 0.86598 0.89983 1.44844 1.75998 1.01846 1.12753 1.19589 1.36302 0.81889 0.99263 0.89581 1.25816 1.01791 1.03068 0.96129 1.70290 1.50803 1.34569 1.04902 0.84900 0.76801 0.79057 0.77915 1.18462 1.22062 1.21634 1.21832 0.96018 0.91659 0.89204 1.68061 1.09085 1.33337 1.13186 0.88931 0.91366 0.86204 0.78313 0.76224 0.89483 0.88494 0.87743 0.93036 0.90327 0.90016 0.89865 0.92809 0.91266 0.92655 0.98763 0.98163 0.94633 0.95181 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.22 71.23 0.73 -0.56 16 2 C 0.15 2.78 6.82 42.66 0.29 3.07 16 3 C -0.19 -1.95 9.87 22.54 0.22 -1.73 16 4 C 0.14 1.64 11.30 84.78 0.96 2.60 16 5 N -0.50 -10.71 7.38 -189.10 -1.40 -12.10 16 6 C 0.27 8.04 6.81 137.68 0.94 8.98 16 7 C 0.56 19.90 7.32 86.99 0.64 20.54 16 8 O -0.52 -23.58 10.05 -3.62 -0.04 -23.62 16 9 N -0.58 -16.73 2.98 -798.42 -2.38 -19.10 16 10 C 0.11 2.08 5.78 86.36 0.50 2.58 16 11 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 12 C -0.11 -1.88 5.89 30.62 0.18 -1.70 16 13 C -0.13 -3.17 4.80 30.53 0.15 -3.03 16 14 C 0.17 5.14 2.58 44.83 0.12 5.26 16 15 H 0.08 2.43 7.84 -2.39 -0.02 2.41 16 16 C -0.08 -3.36 1.92 -9.40 -0.02 -3.38 16 17 H 0.08 3.96 5.84 -12.19 -0.07 3.89 16 18 C -0.12 -5.52 5.61 31.78 0.18 -5.35 16 19 C 0.20 11.70 5.37 86.73 0.47 12.16 16 20 N -0.63 -37.04 3.40 -691.91 -2.35 -39.39 16 21 C -0.24 -14.97 10.28 84.04 0.86 -14.11 16 22 H 0.09 5.01 7.83 -2.91 -0.02 4.99 16 23 C -0.08 -4.76 5.49 84.86 0.47 -4.29 16 24 N -0.96 -64.00 10.31 21.65 0.22 -63.77 16 25 Si 0.99 49.59 29.55 68.60 2.03 51.62 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 28 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 29 C 0.14 6.39 5.33 86.85 0.46 6.86 16 30 N -0.52 -15.47 10.21 -177.24 -1.81 -17.28 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 0.50 8.10 -2.38 -0.02 0.48 16 34 H 0.20 0.07 8.06 -2.91 -0.02 0.05 16 35 H 0.22 0.42 8.06 -2.91 -0.02 0.39 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.85 4.94 -2.39 -0.01 1.84 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 2.05 7.09 -2.39 -0.02 2.04 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 3.48 5.66 -2.42 -0.01 3.46 16 45 H 0.05 2.41 7.83 -2.38 -0.02 2.40 16 46 H -0.01 -0.40 7.38 -2.39 -0.02 -0.42 16 47 H 0.00 0.01 7.50 -2.39 -0.02 -0.01 16 48 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 49 H 0.03 1.30 7.76 -2.39 -0.02 1.29 16 50 H 0.04 1.77 8.13 -2.39 -0.02 1.75 16 Total: -1.00 -90.52 382.13 2.48 -88.04 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.88 Total: 9.56 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 7.32 Total: 26.04 kcal Atomic # 7 Polarization: -143.94 SS G_CDS: -7.71 Total: -151.65 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.62 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.62 kcal Total: -90.52 2.48 -88.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039221195.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.459 kcal (2) G-P(sol) polarization free energy of solvation -90.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds