Wall clock time and date at job start Wed Apr 1 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31882 * 118.95123 * 2 1 4 4 C 1.32136 * 120.96674 * 180.28176 * 3 2 1 5 5 C 1.39971 * 118.92209 * 359.97438 * 4 3 2 6 6 C 1.47828 * 120.94122 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00453 * 224.30334 * 6 5 4 8 8 N 1.34785 * 119.99824 * 44.29974 * 6 5 4 9 9 C 1.47085 * 125.62528 * 5.34594 * 8 6 5 10 10 C 1.54469 * 107.30214 * 180.97810 * 9 8 6 11 11 C 1.54358 * 102.85308 * 21.47691 * 10 9 8 12 12 C 1.47574 * 125.62448 * 185.04138 * 8 6 5 13 13 C 1.52076 * 110.60841 * 83.54008 * 11 10 9 14 14 C 1.53187 * 109.67700 * 64.18823 * 13 11 10 15 15 C 1.53188 * 109.28122 * 59.96126 * 14 13 11 16 16 N 1.46931 * 108.92758 * 304.67704 * 15 14 13 17 17 C 1.36937 * 120.71335 * 234.27942 * 16 15 14 18 18 H 1.08005 * 119.99688 * 28.20353 * 17 16 15 19 19 C 1.38810 * 120.00343 * 208.20133 * 17 16 15 20 20 N 1.31621 * 119.99653 * 20.79157 * 19 17 16 21 21 Si 1.86798 * 120.00061 * 200.79063 * 19 17 16 22 22 H 1.48497 * 109.47389 * 60.00345 * 21 19 17 23 23 H 1.48505 * 109.47012 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47157 * 299.99755 * 21 19 17 25 25 C 1.47106 * 118.57657 * 54.26068 * 16 15 14 26 26 C 1.39935 * 118.12017 * 0.02562 * 5 4 3 27 27 C 1.50706 * 120.53549 * 179.97438 * 26 5 4 28 28 N 1.31848 * 118.95301 * 180.26848 * 2 1 3 29 29 H 1.09000 * 109.47278 * 269.73486 * 1 2 3 30 30 H 1.09002 * 109.46962 * 29.72916 * 1 2 3 31 31 H 1.08996 * 109.47152 * 149.72689 * 1 2 3 32 32 H 1.07997 * 120.54180 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.87609 * 300.40423 * 9 8 6 34 34 H 1.09003 * 109.87691 * 61.40329 * 9 8 6 35 35 H 1.08997 * 110.73688 * 139.81746 * 10 9 8 36 36 H 1.08991 * 110.73687 * 263.13977 * 10 9 8 37 37 H 1.09002 * 110.37774 * 275.54332 * 12 8 6 38 38 H 1.08998 * 110.37995 * 37.89535 * 12 8 6 39 39 H 1.09006 * 109.43421 * 184.24928 * 13 11 10 40 40 H 1.08995 * 109.43856 * 304.16178 * 13 11 10 41 41 H 1.09003 * 109.49986 * 179.90436 * 14 13 11 42 42 H 1.09000 * 109.50263 * 299.97786 * 14 13 11 43 43 H 1.09004 * 109.56316 * 64.51364 * 15 14 13 44 44 H 1.09004 * 109.56239 * 184.73090 * 15 14 13 45 45 H 0.97005 * 119.99297 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.57407 * 187.94105 * 25 16 15 47 47 H 1.09001 * 109.57935 * 67.55271 * 25 16 15 48 48 H 1.09001 * 109.46521 * 273.62684 * 27 26 5 49 49 H 1.08997 * 109.46796 * 33.62682 * 27 26 5 50 50 H 1.08993 * 109.46664 * 153.62777 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1540 0.0000 4 6 3.4659 1.2005 -0.0056 5 6 4.1855 -0.0001 -0.0110 6 6 5.6637 -0.0002 -0.0179 7 8 6.2681 -0.7523 -0.7572 8 7 6.3415 0.8338 0.7956 9 6 5.7437 1.7113 1.8135 10 6 6.8965 2.4959 2.4780 11 6 8.0197 2.4157 1.4223 12 6 7.8062 1.0125 0.8163 13 6 7.8416 3.4973 0.3681 14 6 7.9901 4.8778 1.0153 15 6 9.3840 4.9966 1.6393 16 7 9.5835 3.8824 2.5761 17 6 9.9455 4.1175 3.8757 18 1 9.6612 5.0419 4.3566 19 6 10.6777 3.1679 4.5749 20 7 11.3678 2.2572 3.9217 21 14 10.6836 3.1826 6.4428 22 1 9.2968 3.0063 6.9436 23 1 11.5359 2.0745 6.9438 24 1 11.2234 4.4789 6.9259 25 6 9.3855 2.5088 2.0881 26 6 3.4659 -1.2003 -0.0108 27 6 4.1856 -2.5244 -0.0170 28 7 2.1452 -1.1537 -0.0054 29 1 -0.3634 -0.0048 1.0276 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8875 -0.5180 32 1 3.9816 2.1493 -0.0051 33 1 5.0470 2.4046 1.3422 34 1 5.2221 1.1118 2.5596 35 1 6.6066 3.5315 2.6553 36 1 7.2049 2.0159 3.4067 37 1 8.2726 0.2512 1.4416 38 1 8.2079 0.9718 -0.1961 39 1 8.5987 3.3766 -0.4068 40 1 6.8504 3.4105 -0.0767 41 1 7.8636 5.6506 0.2570 42 1 7.2325 5.0001 1.7894 43 1 10.1399 4.9538 0.8550 44 1 9.4654 5.9435 2.1732 45 1 11.8798 1.5938 4.4104 46 1 9.4313 1.8134 2.9263 47 1 10.1623 2.2628 1.3641 48 1 4.4117 -2.8101 -1.0443 49 1 5.1133 -2.4364 0.5483 50 1 3.5520 -3.2843 0.4404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040454424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:18 Heat of formation + Delta-G solvation = 35.391850 kcal Electronic energy + Delta-G solvation = -31267.970390 eV Core-core repulsion = 27295.688457 eV Total energy + Delta-G solvation = -3972.281934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.61791 -40.14319 -38.44028 -35.96229 -34.72771 -33.86289 -33.03327 -31.45678 -30.06556 -29.55560 -29.44291 -28.79883 -25.69338 -25.36890 -24.29804 -22.99768 -22.54703 -22.14947 -20.80941 -19.74620 -18.35100 -18.25813 -17.09714 -16.66716 -16.35054 -16.08076 -15.54952 -15.46246 -14.80566 -14.38880 -14.16942 -13.92592 -13.72531 -13.49257 -13.39062 -13.28404 -13.19495 -12.93890 -12.73020 -12.67745 -12.62954 -12.52678 -12.37883 -12.08550 -11.82025 -11.77737 -11.25873 -11.08631 -10.84143 -10.75950 -10.66731 -10.48879 -10.26537 -10.16987 -10.02779 -9.88256 -9.64914 -9.61468 -9.57549 -9.49622 -8.57754 -8.51659 -6.73543 -5.86498 -3.26201 0.27058 0.74021 2.54668 2.89227 3.33755 3.40053 3.40983 3.41492 3.54901 3.72254 4.08369 4.27478 4.44165 4.65331 4.76939 4.83917 4.93090 5.05720 5.15505 5.18281 5.25015 5.29962 5.37182 5.38520 5.43340 5.47823 5.53244 5.57694 5.60312 5.72437 5.78966 5.93312 5.96597 6.04654 6.08276 6.11817 6.23201 6.24555 6.36636 6.40246 6.59329 6.62492 6.66628 6.73486 6.80712 6.94926 7.20038 7.45216 7.48555 7.73756 7.75285 8.01835 8.37083 9.13437 9.77753 10.35988 11.22411 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.002856 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.061242 B = 9800.377938 C = 9999.535682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.332 3.668 3 N -0.524 5.524 4 C 0.188 3.812 5 C -0.239 4.239 6 C 0.582 3.418 7 O -0.530 6.530 8 N -0.604 5.604 9 C 0.093 3.907 10 C -0.107 4.107 11 C -0.091 4.091 12 C 0.119 3.881 13 C -0.092 4.092 14 C -0.135 4.135 15 C 0.144 3.856 16 N -0.587 5.587 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.007 3.993 20 N -0.898 5.898 21 Si 0.896 3.104 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.192 3.808 26 C 0.230 3.770 27 C -0.106 4.106 28 N -0.522 5.522 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.053 0.947 45 H 0.255 0.745 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 -3.629 -7.462 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 N -0.239 5.239 4 C 0.021 3.979 5 C -0.247 4.247 6 C 0.368 3.632 7 O -0.407 6.407 8 N -0.337 5.337 9 C -0.029 4.029 10 C -0.144 4.144 11 C -0.093 4.093 12 C -0.003 4.003 13 C -0.129 4.129 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.309 5.309 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.541 5.541 21 Si 0.726 3.274 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.065 3.935 26 C 0.083 3.917 27 C -0.163 4.163 28 N -0.238 5.238 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.192 0.808 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.040 0.960 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.409 -4.202 -7.811 20.435 hybrid contribution 0.988 0.087 1.011 1.416 sum -17.421 -4.115 -6.800 19.149 Atomic orbital electron populations 1.20622 0.85329 1.04394 1.04163 1.23483 0.98431 0.83359 0.88094 1.68322 1.09568 1.30021 1.15975 1.23585 0.89410 0.97841 0.87047 1.21591 0.96119 0.96454 1.10526 1.17355 0.85450 0.80132 0.80251 1.90800 1.69478 1.39529 1.40924 1.48536 1.08868 1.40546 1.35755 1.22379 0.97521 0.92766 0.90263 1.22542 0.92873 1.00618 0.98405 1.21905 0.99918 0.92160 0.95338 1.22364 0.78395 0.97710 1.01807 1.21177 1.00013 0.94852 0.96877 1.22081 1.00476 0.95609 0.99223 1.20911 0.92584 0.92144 0.92614 1.43980 1.79388 0.99909 1.07651 1.19064 1.28192 1.04393 0.86784 0.91757 1.25001 0.96377 0.99841 0.98058 1.70065 1.30192 1.19531 1.34313 0.86467 0.77538 0.77265 0.86122 1.21020 1.21682 1.20876 1.20474 0.88018 0.87917 0.97065 1.21867 0.88907 0.95362 0.85583 1.20857 0.99683 0.91127 1.04636 1.68205 1.09006 1.30177 1.16399 0.89257 0.89336 0.89411 0.80779 0.91875 0.91903 0.89499 0.90154 0.90769 0.90508 0.92453 0.93689 0.93124 0.92123 0.96517 0.92872 0.93520 0.89811 0.95962 0.88628 0.89654 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.31 36.00 0.37 -0.25 16 2 C 0.33 3.72 7.64 -157.08 -1.20 2.52 16 3 N -0.52 -6.22 10.31 -10.39 -0.11 -6.33 16 4 C 0.19 2.20 9.73 -16.77 -0.16 2.03 16 5 C -0.24 -3.10 5.41 -104.69 -0.57 -3.66 16 6 C 0.58 8.53 6.72 -12.33 -0.08 8.45 16 7 O -0.53 -9.14 15.87 5.32 0.08 -9.06 16 8 N -0.60 -8.54 3.32 -171.74 -0.57 -9.11 16 9 C 0.09 1.17 5.64 -2.95 -0.02 1.16 16 10 C -0.11 -1.61 5.68 -25.25 -0.14 -1.75 16 11 C -0.09 -1.49 0.55 -153.97 -0.08 -1.58 16 12 C 0.12 1.87 5.81 -2.76 -0.02 1.86 16 13 C -0.09 -1.39 4.69 -27.11 -0.13 -1.52 16 14 C -0.13 -2.10 5.91 -26.54 -0.16 -2.25 16 15 C 0.14 2.79 6.49 -3.71 -0.02 2.77 16 16 N -0.59 -13.44 2.88 -172.75 -0.50 -13.94 16 17 C -0.25 -6.53 9.56 -15.06 -0.14 -6.67 16 18 H 0.06 1.64 7.91 -52.48 -0.42 1.22 16 19 C 0.01 0.17 4.81 -17.43 -0.08 0.09 16 20 N -0.90 -24.87 11.50 55.49 0.64 -24.23 16 21 Si 0.90 20.75 29.60 -169.99 -5.03 15.72 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.19 4.10 3.98 -4.11 -0.02 4.08 16 26 C 0.23 2.88 6.86 -81.81 -0.56 2.32 16 27 C -0.11 -1.14 9.11 36.01 0.33 -0.82 16 28 N -0.52 -6.37 10.25 -6.67 -0.07 -6.44 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.18 1.73 6.18 -52.49 -0.32 1.41 16 33 H 0.06 0.68 5.63 -51.93 -0.29 0.39 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.31 6.09 -51.93 -0.32 0.99 16 36 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 37 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 38 H 0.08 1.23 8.00 -51.93 -0.42 0.82 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.62 7.83 -51.93 -0.41 0.21 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.94 6.31 -51.93 -0.33 0.61 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.08 2.02 6.11 -51.93 -0.32 1.70 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.08 0.99 6.96 -51.93 -0.36 0.63 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -29.97 388.50 -10.16 -40.13 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.78 Total: 0.62 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -2.69 Total: 6.78 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.60 Total: -60.05 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.97 -10.16 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040454424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.525 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds