Wall clock time and date at job start Wed Apr 1 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31882 * 118.95123 * 2 1 4 4 C 1.32136 * 120.96674 * 180.28176 * 3 2 1 5 5 C 1.39971 * 118.92209 * 359.97438 * 4 3 2 6 6 C 1.47828 * 120.94122 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00453 * 224.30334 * 6 5 4 8 8 N 1.34785 * 119.99824 * 44.29974 * 6 5 4 9 9 C 1.47085 * 125.62528 * 5.34594 * 8 6 5 10 10 C 1.54469 * 107.30214 * 180.97810 * 9 8 6 11 11 C 1.54358 * 102.85308 * 21.47691 * 10 9 8 12 12 C 1.47574 * 125.62448 * 185.04138 * 8 6 5 13 13 C 1.52076 * 110.60841 * 83.54008 * 11 10 9 14 14 C 1.53187 * 109.67700 * 64.18823 * 13 11 10 15 15 C 1.53188 * 109.28122 * 59.96126 * 14 13 11 16 16 N 1.46931 * 108.92758 * 304.67704 * 15 14 13 17 17 C 1.36937 * 120.71335 * 234.27942 * 16 15 14 18 18 H 1.08005 * 119.99688 * 28.20353 * 17 16 15 19 19 C 1.38810 * 120.00343 * 208.20133 * 17 16 15 20 20 N 1.31621 * 119.99653 * 20.79157 * 19 17 16 21 21 Si 1.86798 * 120.00061 * 200.79063 * 19 17 16 22 22 H 1.48497 * 109.47389 * 60.00345 * 21 19 17 23 23 H 1.48505 * 109.47012 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47157 * 299.99755 * 21 19 17 25 25 C 1.47106 * 118.57657 * 54.26068 * 16 15 14 26 26 C 1.39935 * 118.12017 * 0.02562 * 5 4 3 27 27 C 1.50706 * 120.53549 * 179.97438 * 26 5 4 28 28 N 1.31848 * 118.95301 * 180.26848 * 2 1 3 29 29 H 1.09000 * 109.47278 * 269.73486 * 1 2 3 30 30 H 1.09002 * 109.46962 * 29.72916 * 1 2 3 31 31 H 1.08996 * 109.47152 * 149.72689 * 1 2 3 32 32 H 1.07997 * 120.54180 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.87609 * 300.40423 * 9 8 6 34 34 H 1.09003 * 109.87691 * 61.40329 * 9 8 6 35 35 H 1.08997 * 110.73688 * 139.81746 * 10 9 8 36 36 H 1.08991 * 110.73687 * 263.13977 * 10 9 8 37 37 H 1.09002 * 110.37774 * 275.54332 * 12 8 6 38 38 H 1.08998 * 110.37995 * 37.89535 * 12 8 6 39 39 H 1.09006 * 109.43421 * 184.24928 * 13 11 10 40 40 H 1.08995 * 109.43856 * 304.16178 * 13 11 10 41 41 H 1.09003 * 109.49986 * 179.90436 * 14 13 11 42 42 H 1.09000 * 109.50263 * 299.97786 * 14 13 11 43 43 H 1.09004 * 109.56316 * 64.51364 * 15 14 13 44 44 H 1.09004 * 109.56239 * 184.73090 * 15 14 13 45 45 H 0.97005 * 119.99297 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.57407 * 187.94105 * 25 16 15 47 47 H 1.09001 * 109.57935 * 67.55271 * 25 16 15 48 48 H 1.09001 * 109.46521 * 273.62684 * 27 26 5 49 49 H 1.08997 * 109.46796 * 33.62682 * 27 26 5 50 50 H 1.08993 * 109.46664 * 153.62777 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1540 0.0000 4 6 3.4659 1.2005 -0.0056 5 6 4.1855 -0.0001 -0.0110 6 6 5.6637 -0.0002 -0.0179 7 8 6.2681 -0.7523 -0.7572 8 7 6.3415 0.8338 0.7956 9 6 5.7437 1.7113 1.8135 10 6 6.8965 2.4959 2.4780 11 6 8.0197 2.4157 1.4223 12 6 7.8062 1.0125 0.8163 13 6 7.8416 3.4973 0.3681 14 6 7.9901 4.8778 1.0153 15 6 9.3840 4.9966 1.6393 16 7 9.5835 3.8824 2.5761 17 6 9.9455 4.1175 3.8757 18 1 9.6612 5.0419 4.3566 19 6 10.6777 3.1679 4.5749 20 7 11.3678 2.2572 3.9217 21 14 10.6836 3.1826 6.4428 22 1 9.2968 3.0063 6.9436 23 1 11.5359 2.0745 6.9438 24 1 11.2234 4.4789 6.9259 25 6 9.3855 2.5088 2.0881 26 6 3.4659 -1.2003 -0.0108 27 6 4.1856 -2.5244 -0.0170 28 7 2.1452 -1.1537 -0.0054 29 1 -0.3634 -0.0048 1.0276 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8875 -0.5180 32 1 3.9816 2.1493 -0.0051 33 1 5.0470 2.4046 1.3422 34 1 5.2221 1.1118 2.5596 35 1 6.6066 3.5315 2.6553 36 1 7.2049 2.0159 3.4067 37 1 8.2726 0.2512 1.4416 38 1 8.2079 0.9718 -0.1961 39 1 8.5987 3.3766 -0.4068 40 1 6.8504 3.4105 -0.0767 41 1 7.8636 5.6506 0.2570 42 1 7.2325 5.0001 1.7894 43 1 10.1399 4.9538 0.8550 44 1 9.4654 5.9435 2.1732 45 1 11.8798 1.5938 4.4104 46 1 9.4313 1.8134 2.9263 47 1 10.1623 2.2628 1.3641 48 1 4.4117 -2.8101 -1.0443 49 1 5.1133 -2.4364 0.5483 50 1 3.5520 -3.2843 0.4404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040454424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:17 Heat of formation + Delta-G solvation = 18.426912 kcal Electronic energy + Delta-G solvation = -31268.706045 eV Core-core repulsion = 27295.688457 eV Total energy + Delta-G solvation = -3973.017589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.55390 -41.35471 -39.73006 -37.40369 -35.62800 -34.96202 -34.52849 -32.84830 -31.77502 -30.69542 -30.26753 -29.75885 -27.23518 -26.95411 -25.25618 -24.18326 -23.76715 -23.40551 -22.26254 -20.88876 -19.75978 -19.18807 -18.63799 -18.05387 -17.33160 -17.13552 -16.75581 -16.58522 -16.38906 -15.82316 -15.52803 -15.19361 -14.87755 -14.80065 -14.65592 -14.35818 -14.19537 -14.15225 -14.06957 -13.89692 -13.44150 -13.40299 -13.33154 -13.22135 -13.13251 -12.95695 -12.76333 -12.69960 -12.47823 -12.22622 -12.10752 -11.86925 -11.73018 -11.66496 -11.41022 -11.22554 -11.04375 -11.02281 -10.54780 -10.49331 -10.47032 -9.75152 -8.63990 -7.85911 -5.27621 -0.63520 -0.15173 1.44134 1.47934 1.50209 1.56349 1.75516 2.50711 2.53435 2.76591 2.89669 3.18922 3.21299 3.28297 3.53777 3.62950 3.76424 3.85168 3.96179 4.06622 4.17248 4.21772 4.29591 4.38319 4.48067 4.52450 4.56111 4.57516 4.63289 4.71199 4.72573 4.76533 4.78628 4.88337 4.88689 4.95894 5.04340 5.07707 5.14289 5.18146 5.27819 5.31055 5.32292 5.37828 5.47232 5.59366 5.71262 5.73950 5.74477 6.33391 6.41053 6.85532 6.88472 7.17289 7.89355 8.42679 9.20502 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.002856 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.061242 B = 9800.377938 C = 9999.535682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.328 3.672 3 N -0.532 5.532 4 C 0.195 3.805 5 C -0.254 4.254 6 C 0.587 3.413 7 O -0.562 6.562 8 N -0.601 5.601 9 C 0.102 3.898 10 C -0.101 4.101 11 C -0.081 4.081 12 C 0.126 3.874 13 C -0.087 4.087 14 C -0.122 4.122 15 C 0.137 3.863 16 N -0.602 5.602 17 C -0.255 4.255 18 H 0.067 0.933 19 C -0.045 4.045 20 N -0.932 5.932 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.300 1.300 24 H -0.277 1.277 25 C 0.204 3.796 26 C 0.222 3.778 27 C -0.102 4.102 28 N -0.532 5.532 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.195 0.805 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.053 0.947 45 H 0.248 0.752 46 H 0.049 0.951 47 H -0.011 1.011 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.223 -2.377 -7.797 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 N -0.246 5.246 4 C 0.028 3.972 5 C -0.262 4.262 6 C 0.375 3.625 7 O -0.441 6.441 8 N -0.333 5.333 9 C -0.020 4.020 10 C -0.139 4.139 11 C -0.084 4.084 12 C 0.003 3.997 13 C -0.124 4.124 14 C -0.160 4.160 15 C 0.011 3.989 16 N -0.325 5.325 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.578 5.578 21 Si 0.784 3.216 22 H -0.202 1.202 23 H -0.226 1.226 24 H -0.203 1.203 25 C 0.078 3.922 26 C 0.075 3.925 27 C -0.159 4.159 28 N -0.248 5.248 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.211 0.789 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.007 0.993 48 H 0.114 0.886 49 H 0.091 0.909 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.848 -2.917 -8.149 23.500 hybrid contribution 2.051 -0.276 1.079 2.334 sum -19.797 -3.194 -7.069 21.263 Atomic orbital electron populations 1.20789 0.82628 1.05502 1.05409 1.24283 1.00086 0.82948 0.86442 1.68445 1.09455 1.30210 1.16523 1.23868 0.89514 0.98001 0.85813 1.21420 0.94700 0.97369 1.12714 1.17574 0.86167 0.79321 0.79474 1.90783 1.70328 1.40763 1.42244 1.48484 1.07936 1.40876 1.36050 1.22407 0.96641 0.92841 0.90130 1.22430 0.93134 1.01287 0.97036 1.21630 0.97313 0.93284 0.96140 1.22113 0.79739 0.96825 1.01058 1.21158 1.01398 0.93879 0.96015 1.21948 0.97508 0.96611 0.99951 1.21099 0.95019 0.90913 0.91833 1.44231 1.79466 1.01196 1.07642 1.19372 1.26921 1.04118 0.88105 0.91545 1.25672 0.96707 1.00063 1.01675 1.70212 1.31664 1.20476 1.35464 0.85521 0.77505 0.76854 0.81690 1.20189 1.22647 1.20330 1.20173 0.90130 0.86733 0.95179 1.22107 0.89372 0.95780 0.85194 1.20837 0.99327 0.91184 1.04589 1.68307 1.08639 1.30751 1.17120 0.87716 0.88121 0.88399 0.78869 0.88792 0.90901 0.88657 0.92603 0.92563 0.90929 0.93153 0.90779 0.90076 0.91312 0.97545 0.92880 0.94295 0.93240 0.99259 0.88600 0.90869 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.31 71.23 0.73 -0.21 16 2 C 0.33 6.45 7.64 138.71 1.06 7.51 16 3 N -0.53 -10.97 10.31 -186.80 -1.93 -12.90 16 4 C 0.19 3.96 9.73 85.07 0.83 4.79 16 5 C -0.25 -6.12 5.41 -19.91 -0.11 -6.23 16 6 C 0.59 16.60 6.72 86.78 0.58 17.19 16 7 O -0.56 -19.37 15.87 -3.88 -0.06 -19.43 16 8 N -0.60 -16.25 3.32 -815.52 -2.71 -18.96 16 9 C 0.10 2.29 5.64 86.77 0.49 2.78 16 10 C -0.10 -2.92 5.68 31.55 0.18 -2.74 16 11 C -0.08 -2.65 0.55 -51.83 -0.03 -2.68 16 12 C 0.13 3.99 5.81 86.62 0.50 4.49 16 13 C -0.09 -2.44 4.69 30.35 0.14 -2.30 16 14 C -0.12 -3.43 5.91 30.72 0.18 -3.25 16 15 C 0.14 5.21 6.49 86.36 0.56 5.77 16 16 N -0.60 -28.02 2.88 -700.45 -2.01 -30.03 16 17 C -0.25 -13.23 9.56 84.03 0.80 -12.42 16 18 H 0.07 3.37 7.91 -2.91 -0.02 3.34 16 19 C -0.05 -2.44 4.81 84.86 0.41 -2.03 16 20 N -0.93 -53.95 11.50 21.65 0.25 -53.70 16 21 Si 0.96 43.47 29.60 68.60 2.03 45.50 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 C 0.20 9.10 3.98 86.01 0.34 9.45 16 26 C 0.22 5.26 6.86 42.92 0.29 5.55 16 27 C -0.10 -2.14 9.11 71.24 0.65 -1.50 16 28 N -0.53 -11.89 10.25 -175.03 -1.79 -13.69 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.19 3.02 6.18 -2.91 -0.02 3.00 16 33 H 0.09 1.60 5.63 -2.39 -0.01 1.59 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 2.61 6.09 -2.39 -0.01 2.60 16 36 H 0.06 1.89 7.87 -2.39 -0.02 1.87 16 37 H 0.06 1.97 8.01 -2.39 -0.02 1.96 16 38 H 0.07 2.37 8.00 -2.39 -0.02 2.35 16 39 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.07 1.72 7.83 -2.39 -0.02 1.70 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 1.88 6.31 -2.39 -0.02 1.86 16 43 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.05 1.99 7.94 -2.39 -0.02 1.97 16 45 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 46 H 0.05 2.53 6.11 -2.39 -0.01 2.52 16 47 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 48 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.07 1.71 6.96 -2.39 -0.02 1.69 16 50 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -66.97 388.50 2.34 -64.63 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.95 Total: 14.40 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 7.62 Total: 24.17 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -8.19 Total: -129.28 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.06 Total: -19.43 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.97 2.34 -64.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040454424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.054 kcal (2) G-P(sol) polarization free energy of solvation -66.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds