Wall clock time and date at job start Wed Apr 1 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38803 * 120.42735 * 2 1 4 4 C 1.39501 * 118.26218 * 179.72936 * 3 2 1 5 5 C 1.48448 * 120.54818 * 180.02562 * 4 3 2 6 6 O 1.21482 * 120.00089 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00210 * 179.97438 * 5 4 3 8 8 C 1.47487 * 125.65567 * 359.69082 * 7 5 4 9 9 C 1.55244 * 104.78888 * 155.93118 * 8 7 5 10 10 C 1.54514 * 101.44021 * 36.66265 * 9 8 7 11 11 C 1.47167 * 125.66354 * 179.97438 * 7 5 4 12 12 C 1.52274 * 110.20730 * 83.42266 * 10 9 8 13 13 C 1.53308 * 109.42445 * 182.20083 * 12 10 9 14 14 N 1.46929 * 108.70885 * 306.49452 * 13 12 10 15 15 C 1.36936 * 120.56248 * 234.21357 * 14 13 12 16 16 H 1.08006 * 119.99679 * 152.08049 * 15 14 13 17 17 C 1.38807 * 120.00337 * 332.07629 * 15 14 13 18 18 N 1.31628 * 119.99736 * 342.48630 * 17 15 14 19 19 Si 1.86800 * 120.00350 * 162.48697 * 17 15 14 20 20 H 1.48503 * 109.47035 * 94.33480 * 19 17 15 21 21 H 1.48494 * 109.46977 * 214.33668 * 19 17 15 22 22 H 1.48504 * 109.46963 * 334.33640 * 19 17 15 23 23 C 1.46933 * 118.87429 * 54.22950 * 14 13 12 24 24 C 1.52272 * 110.21064 * 206.61160 * 10 9 8 25 25 N 1.33104 * 118.90219 * 0.02562 * 4 3 2 26 26 C 1.31557 * 120.73596 * 359.97438 * 25 4 3 27 27 C 1.50699 * 119.04008 * 180.02562 * 26 25 4 28 28 N 1.31912 * 121.91929 * 0.02562 * 26 25 4 29 29 H 1.08994 * 109.47665 * 89.99484 * 1 2 3 30 30 H 1.09002 * 109.47140 * 210.00149 * 1 2 3 31 31 H 1.08999 * 109.47066 * 329.99556 * 1 2 3 32 32 H 1.07995 * 120.87011 * 359.70491 * 3 2 1 33 33 H 1.09003 * 110.35269 * 274.87146 * 8 7 5 34 34 H 1.08993 * 110.35750 * 37.16626 * 8 7 5 35 35 H 1.08996 * 111.20099 * 278.57419 * 9 8 7 36 36 H 1.09001 * 110.91615 * 154.62953 * 9 8 7 37 37 H 1.08999 * 109.91307 * 300.83633 * 11 7 5 38 38 H 1.09007 * 109.90865 * 61.91238 * 11 7 5 39 39 H 1.09002 * 109.47992 * 302.18356 * 12 10 9 40 40 H 1.09001 * 109.47707 * 62.21478 * 12 10 9 41 41 H 1.08997 * 109.60076 * 186.72536 * 13 12 10 42 42 H 1.09000 * 109.59876 * 66.25546 * 13 12 10 43 43 H 0.96999 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.60250 * 185.99528 * 23 14 13 45 45 H 1.08998 * 109.72900 * 65.60111 * 23 14 13 46 46 H 1.08996 * 109.48228 * 297.77478 * 24 10 9 47 47 H 1.09000 * 109.48051 * 57.80104 * 24 10 9 48 48 H 1.09007 * 109.46833 * 90.00346 * 27 26 25 49 49 H 1.08997 * 109.47095 * 209.99809 * 27 26 25 50 50 H 1.09002 * 109.47314 * 330.00486 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6040 1.1442 0.0058 5 6 4.4062 2.3932 0.0067 6 8 3.8493 3.4728 0.0018 7 7 5.7525 2.3294 0.0128 8 6 6.5545 1.0918 0.0256 9 6 7.9228 1.4999 -0.5840 10 6 8.0983 2.9260 -0.0157 11 6 6.6661 3.4832 0.0138 12 6 8.6795 2.8640 1.3904 13 6 8.7947 4.2837 1.9575 14 7 9.5493 5.1113 1.0065 15 6 10.6574 5.8051 1.4137 16 1 11.4444 6.0279 0.7084 17 6 10.7692 6.2221 2.7330 18 7 9.7016 6.2675 3.5015 19 14 12.4347 6.7188 3.4177 20 1 12.6014 8.1894 3.2956 21 1 12.5184 6.3282 4.8478 22 1 13.5082 6.0338 2.6537 23 6 9.0946 5.1821 -0.3889 24 6 8.9777 3.7564 -0.9408 25 7 4.2028 -0.0446 0.0106 26 6 3.4954 -1.1538 0.0103 27 6 4.2129 -2.4790 0.0164 28 7 2.1764 -1.1398 0.0049 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6913 2.1441 -0.0048 33 1 6.6836 0.7342 1.0471 34 1 6.0800 0.3261 -0.5880 35 1 7.8801 1.5157 -1.6730 36 1 8.7167 0.8396 -0.2349 37 1 6.4887 4.0980 -0.8685 38 1 6.5143 4.0761 0.9158 39 1 8.0252 2.2698 2.0284 40 1 9.6677 2.4053 1.3553 41 1 9.3188 4.2544 2.9128 42 1 7.7985 4.7035 2.0972 43 1 9.7798 6.5585 4.4235 44 1 9.8163 5.7451 -0.9806 45 1 8.1223 5.6726 -0.4346 46 1 9.9690 3.3072 -1.0000 47 1 8.5323 3.7868 -1.9352 48 1 4.3817 -2.7960 1.0456 49 1 3.6054 -3.2234 -0.4981 50 1 5.1707 -2.3760 -0.4937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040882664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:25 Heat of formation + Delta-G solvation = 41.708735 kcal Electronic energy + Delta-G solvation = -30874.450612 eV Core-core repulsion = 26902.442599 eV Total energy + Delta-G solvation = -3972.008013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.61730 -40.16715 -38.42869 -35.92558 -34.95548 -33.76675 -32.99680 -31.08653 -29.98520 -29.61811 -29.21923 -28.50695 -27.12436 -25.22125 -23.83508 -22.84971 -22.52044 -22.17104 -20.66187 -19.90112 -18.27820 -18.16387 -16.94787 -16.34952 -16.23997 -15.98955 -15.57535 -15.43213 -14.87638 -14.64801 -14.13413 -13.97381 -13.79671 -13.72623 -13.51997 -13.16368 -13.14378 -12.97659 -12.85773 -12.64477 -12.62457 -12.51315 -12.27127 -12.00462 -11.64951 -11.35097 -11.18721 -11.10879 -10.89266 -10.76131 -10.69162 -10.46593 -10.42390 -10.19378 -10.13568 -9.82484 -9.71705 -9.49914 -9.44992 -9.30461 -8.53568 -8.41741 -6.63873 -5.76977 -3.18960 0.26317 0.57830 2.63051 2.79552 3.38057 3.45483 3.47654 3.49733 3.51044 3.59612 4.09946 4.50967 4.53055 4.58118 4.78383 4.83469 4.99165 5.05787 5.10139 5.11510 5.16694 5.22486 5.38727 5.41368 5.42254 5.47374 5.51386 5.61693 5.68249 5.72134 5.89306 5.98746 6.04724 6.06855 6.09090 6.13043 6.26109 6.31953 6.35439 6.49530 6.58109 6.62569 6.68067 6.76481 6.86583 6.99592 7.36925 7.49451 7.66958 7.67888 7.81319 8.04054 8.46983 9.23141 9.86979 10.43604 11.31314 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.002482 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.427515 B =11279.676844 C =11591.634316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.179 3.821 3 C -0.179 4.179 4 C 0.148 3.852 5 C 0.575 3.425 6 O -0.528 6.528 7 N -0.588 5.588 8 C 0.103 3.897 9 C -0.131 4.131 10 C -0.055 4.055 11 C 0.115 3.885 12 C -0.127 4.127 13 C 0.170 3.830 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.142 3.858 24 C -0.117 4.117 25 N -0.494 5.494 26 C 0.317 3.683 27 C -0.085 4.085 28 N -0.511 5.511 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 -17.910 -8.720 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.032 3.968 3 C -0.202 4.202 4 C 0.001 3.999 5 C 0.360 3.640 6 O -0.404 6.404 7 N -0.320 5.320 8 C -0.019 4.019 9 C -0.169 4.169 10 C -0.056 4.056 11 C -0.006 4.006 12 C -0.166 4.166 13 C 0.044 3.956 14 N -0.313 5.313 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.016 3.984 24 C -0.157 4.157 25 N -0.212 5.212 26 C 0.050 3.950 27 C -0.143 4.143 28 N -0.227 5.227 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.177 0.823 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.051 -18.075 -8.538 24.434 hybrid contribution 0.394 1.121 0.511 1.294 sum -13.657 -16.953 -8.027 23.203 Atomic orbital electron populations 1.20811 0.87154 1.04419 1.03964 1.21826 0.97855 0.87581 0.89553 1.22775 0.94569 1.01386 1.01469 1.21655 0.91989 0.92384 0.93853 1.17387 0.81093 0.86950 0.78565 1.90813 1.70517 1.28263 1.50855 1.48440 1.04171 1.10011 1.69337 1.22752 0.90588 0.86801 1.01807 1.23001 0.96450 0.97213 1.00258 1.20979 0.93046 0.93938 0.97657 1.22272 0.87747 0.87546 1.03043 1.22098 0.99484 1.01437 0.93555 1.20834 0.95072 0.85346 0.94359 1.44036 1.30915 1.52313 1.04062 1.19172 0.94856 1.29362 0.94668 0.91736 1.25037 0.96924 0.99296 0.98466 1.70046 1.26629 1.50499 1.07473 0.86314 0.84130 0.78260 0.78272 1.21506 1.21613 1.20462 1.20954 0.97324 0.92688 0.87444 1.21918 0.98892 0.98480 0.96379 1.68484 1.40615 0.98105 1.14029 1.23346 0.86513 0.94796 0.90342 1.20600 1.00048 0.89465 1.04193 1.68050 1.09856 1.30514 1.14304 0.89387 0.89661 0.89700 0.82269 0.91324 0.88240 0.91102 0.89926 0.91313 0.89963 0.93285 0.92131 0.89376 0.96335 0.93679 0.92757 0.96393 0.91707 0.92972 0.89338 0.89520 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.22 36.01 0.37 -0.27 16 2 C 0.18 1.77 6.83 -82.23 -0.56 1.21 16 3 C -0.18 -2.04 9.41 -38.90 -0.37 -2.41 16 4 C 0.15 2.01 6.75 -82.64 -0.56 1.45 16 5 C 0.57 9.30 7.86 -12.05 -0.09 9.20 16 6 O -0.53 -9.98 16.75 5.38 0.09 -9.89 16 7 N -0.59 -9.14 3.33 -171.41 -0.57 -9.71 16 8 C 0.10 1.32 5.66 -2.31 -0.01 1.31 16 9 C -0.13 -1.66 6.00 -24.75 -0.15 -1.80 16 10 C -0.06 -0.88 0.53 -154.09 -0.08 -0.97 16 11 C 0.12 1.97 5.05 -3.31 -0.02 1.95 16 12 C -0.13 -2.32 4.78 -26.94 -0.13 -2.45 16 13 C 0.17 3.98 5.03 -3.65 -0.02 3.96 16 14 N -0.59 -14.56 2.98 -172.16 -0.51 -15.07 16 15 C -0.25 -6.83 9.57 -15.06 -0.14 -6.98 16 16 H 0.06 1.73 7.89 -52.48 -0.41 1.31 16 17 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 18 N -0.90 -26.27 11.20 55.49 0.62 -25.65 16 19 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.14 2.94 6.24 -3.64 -0.02 2.91 16 24 C -0.12 -1.94 4.70 -26.94 -0.13 -2.07 16 25 N -0.49 -6.02 6.69 -7.32 -0.05 -6.07 16 26 C 0.32 3.37 7.64 -157.30 -1.20 2.17 16 27 C -0.08 -0.58 10.31 36.01 0.37 -0.21 16 28 N -0.51 -5.49 10.25 -7.00 -0.07 -5.57 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.16 1.66 7.74 -52.49 -0.41 1.25 16 33 H 0.07 0.89 7.74 -51.93 -0.40 0.49 16 34 H 0.10 1.17 5.91 -51.93 -0.31 0.87 16 35 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 36 H 0.08 0.95 8.01 -51.93 -0.42 0.54 16 37 H 0.07 1.19 7.59 -51.93 -0.39 0.80 16 38 H 0.08 1.64 6.08 -51.92 -0.32 1.32 16 39 H 0.05 0.84 7.47 -51.93 -0.39 0.46 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.09 2.34 6.02 -51.93 -0.31 2.03 16 42 H 0.02 0.47 6.53 -51.93 -0.34 0.13 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.02 0.38 7.48 -51.93 -0.39 0.00 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 48 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -32.44 389.50 -10.33 -42.76 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.85 Total: -0.26 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.83 Total: 6.95 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.58 Total: -62.07 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.44 -10.33 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040882664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.471 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds