Wall clock time and date at job start Wed Apr 1 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38803 * 120.42735 * 2 1 4 4 C 1.39501 * 118.26218 * 179.72936 * 3 2 1 5 5 C 1.48448 * 120.54818 * 180.02562 * 4 3 2 6 6 O 1.21482 * 120.00089 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00210 * 179.97438 * 5 4 3 8 8 C 1.47487 * 125.65567 * 359.69082 * 7 5 4 9 9 C 1.55244 * 104.78888 * 155.93118 * 8 7 5 10 10 C 1.54514 * 101.44021 * 36.66265 * 9 8 7 11 11 C 1.47167 * 125.66354 * 179.97438 * 7 5 4 12 12 C 1.52274 * 110.20730 * 83.42266 * 10 9 8 13 13 C 1.53308 * 109.42445 * 182.20083 * 12 10 9 14 14 N 1.46929 * 108.70885 * 306.49452 * 13 12 10 15 15 C 1.36936 * 120.56248 * 234.21357 * 14 13 12 16 16 H 1.08006 * 119.99679 * 152.08049 * 15 14 13 17 17 C 1.38807 * 120.00337 * 332.07629 * 15 14 13 18 18 N 1.31628 * 119.99736 * 342.48630 * 17 15 14 19 19 Si 1.86800 * 120.00350 * 162.48697 * 17 15 14 20 20 H 1.48503 * 109.47035 * 94.33480 * 19 17 15 21 21 H 1.48494 * 109.46977 * 214.33668 * 19 17 15 22 22 H 1.48504 * 109.46963 * 334.33640 * 19 17 15 23 23 C 1.46933 * 118.87429 * 54.22950 * 14 13 12 24 24 C 1.52272 * 110.21064 * 206.61160 * 10 9 8 25 25 N 1.33104 * 118.90219 * 0.02562 * 4 3 2 26 26 C 1.31557 * 120.73596 * 359.97438 * 25 4 3 27 27 C 1.50699 * 119.04008 * 180.02562 * 26 25 4 28 28 N 1.31912 * 121.91929 * 0.02562 * 26 25 4 29 29 H 1.08994 * 109.47665 * 89.99484 * 1 2 3 30 30 H 1.09002 * 109.47140 * 210.00149 * 1 2 3 31 31 H 1.08999 * 109.47066 * 329.99556 * 1 2 3 32 32 H 1.07995 * 120.87011 * 359.70491 * 3 2 1 33 33 H 1.09003 * 110.35269 * 274.87146 * 8 7 5 34 34 H 1.08993 * 110.35750 * 37.16626 * 8 7 5 35 35 H 1.08996 * 111.20099 * 278.57419 * 9 8 7 36 36 H 1.09001 * 110.91615 * 154.62953 * 9 8 7 37 37 H 1.08999 * 109.91307 * 300.83633 * 11 7 5 38 38 H 1.09007 * 109.90865 * 61.91238 * 11 7 5 39 39 H 1.09002 * 109.47992 * 302.18356 * 12 10 9 40 40 H 1.09001 * 109.47707 * 62.21478 * 12 10 9 41 41 H 1.08997 * 109.60076 * 186.72536 * 13 12 10 42 42 H 1.09000 * 109.59876 * 66.25546 * 13 12 10 43 43 H 0.96999 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.60250 * 185.99528 * 23 14 13 45 45 H 1.08998 * 109.72900 * 65.60111 * 23 14 13 46 46 H 1.08996 * 109.48228 * 297.77478 * 24 10 9 47 47 H 1.09000 * 109.48051 * 57.80104 * 24 10 9 48 48 H 1.09007 * 109.46833 * 90.00346 * 27 26 25 49 49 H 1.08997 * 109.47095 * 209.99809 * 27 26 25 50 50 H 1.09002 * 109.47314 * 330.00486 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6040 1.1442 0.0058 5 6 4.4062 2.3932 0.0067 6 8 3.8493 3.4728 0.0018 7 7 5.7525 2.3294 0.0128 8 6 6.5545 1.0918 0.0256 9 6 7.9228 1.4999 -0.5840 10 6 8.0983 2.9260 -0.0157 11 6 6.6661 3.4832 0.0138 12 6 8.6795 2.8640 1.3904 13 6 8.7947 4.2837 1.9575 14 7 9.5493 5.1113 1.0065 15 6 10.6574 5.8051 1.4137 16 1 11.4444 6.0279 0.7084 17 6 10.7692 6.2221 2.7330 18 7 9.7016 6.2675 3.5015 19 14 12.4347 6.7188 3.4177 20 1 12.6014 8.1894 3.2956 21 1 12.5184 6.3282 4.8478 22 1 13.5082 6.0338 2.6537 23 6 9.0946 5.1821 -0.3889 24 6 8.9777 3.7564 -0.9408 25 7 4.2028 -0.0446 0.0106 26 6 3.4954 -1.1538 0.0103 27 6 4.2129 -2.4790 0.0164 28 7 2.1764 -1.1398 0.0049 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6913 2.1441 -0.0048 33 1 6.6836 0.7342 1.0471 34 1 6.0800 0.3261 -0.5880 35 1 7.8801 1.5157 -1.6730 36 1 8.7167 0.8396 -0.2349 37 1 6.4887 4.0980 -0.8685 38 1 6.5143 4.0761 0.9158 39 1 8.0252 2.2698 2.0284 40 1 9.6677 2.4053 1.3553 41 1 9.3188 4.2544 2.9128 42 1 7.7985 4.7035 2.0972 43 1 9.7798 6.5585 4.4235 44 1 9.8163 5.7451 -0.9806 45 1 8.1223 5.6726 -0.4346 46 1 9.9690 3.3072 -1.0000 47 1 8.5323 3.7868 -1.9352 48 1 4.3817 -2.7960 1.0456 49 1 3.6054 -3.2234 -0.4981 50 1 5.1707 -2.3760 -0.4937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040882664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:24 Heat of formation + Delta-G solvation = 22.650736 kcal Electronic energy + Delta-G solvation = -30875.277029 eV Core-core repulsion = 26902.442599 eV Total energy + Delta-G solvation = -3972.834430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.52060 -41.41036 -39.79010 -37.49449 -35.81666 -34.82594 -34.42943 -32.77451 -31.65942 -30.61405 -30.16943 -29.23445 -28.54169 -26.79106 -25.17424 -24.16322 -23.80990 -23.23696 -22.22302 -20.98041 -19.76180 -19.26014 -18.49699 -17.66821 -17.38102 -17.09019 -16.83686 -16.52307 -16.39284 -15.73695 -15.50916 -15.45926 -15.19889 -14.86322 -14.66727 -14.43252 -14.26516 -14.18409 -13.85236 -13.76275 -13.43579 -13.32225 -13.20495 -13.09440 -13.05252 -13.00169 -12.75891 -12.57172 -12.39610 -12.19093 -12.00072 -11.89682 -11.81783 -11.66142 -11.63205 -11.46852 -11.08580 -10.97030 -10.53658 -10.51920 -10.31125 -9.77220 -8.66186 -7.86684 -5.32059 -0.69044 -0.21075 1.45994 1.47285 1.50927 1.57696 1.64120 2.51579 2.60587 2.64429 2.86417 3.20162 3.27580 3.55072 3.62388 3.66769 3.72381 3.81477 3.85980 4.23762 4.25000 4.28394 4.33660 4.42785 4.53909 4.62250 4.66733 4.68321 4.69999 4.73548 4.76495 4.76641 4.84452 4.89273 4.90949 5.01186 5.03285 5.10706 5.16396 5.17397 5.28406 5.31787 5.37012 5.40518 5.41977 5.51846 5.65399 5.73144 5.77690 6.29734 6.39459 6.73035 6.91620 7.15201 7.87317 8.39027 9.19388 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.002482 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.427515 B =11279.676844 C =11591.634316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.185 3.815 3 C -0.186 4.186 4 C 0.129 3.871 5 C 0.569 3.431 6 O -0.568 6.568 7 N -0.590 5.590 8 C 0.105 3.895 9 C -0.115 4.115 10 C -0.052 4.052 11 C 0.121 3.879 12 C -0.110 4.110 13 C 0.178 3.822 14 N -0.608 5.608 15 C -0.258 4.258 16 H 0.069 0.931 17 C -0.055 4.055 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.136 3.864 24 C -0.104 4.104 25 N -0.501 5.501 26 C 0.311 3.689 27 C -0.082 4.082 28 N -0.517 5.517 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.052 0.948 42 H -0.014 1.014 43 H 0.248 0.752 44 H 0.055 0.945 45 H 0.004 0.996 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 -21.042 -10.436 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.036 3.964 3 C -0.209 4.209 4 C -0.017 4.017 5 C 0.356 3.644 6 O -0.448 6.448 7 N -0.321 5.321 8 C -0.016 4.016 9 C -0.153 4.153 10 C -0.053 4.053 11 C -0.001 4.001 12 C -0.149 4.149 13 C 0.052 3.948 14 N -0.331 5.331 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.250 4.250 18 N -0.585 5.585 19 Si 0.795 3.205 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.191 1.191 23 C 0.011 3.989 24 C -0.143 4.143 25 N -0.220 5.220 26 C 0.044 3.956 27 C -0.140 4.140 28 N -0.234 5.234 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.180 0.820 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.004 0.996 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.022 0.978 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.906 -21.247 -10.289 27.399 hybrid contribution 0.244 2.119 1.030 2.369 sum -13.662 -19.128 -9.260 25.264 Atomic orbital electron populations 1.20954 0.84311 1.05533 1.05303 1.22412 0.99569 0.86659 0.87712 1.22918 0.93924 1.02385 1.01652 1.21337 0.92437 0.91877 0.96065 1.17883 0.81321 0.87585 0.77608 1.90775 1.71325 1.30020 1.52636 1.48550 1.04178 1.10428 1.68901 1.22907 0.90471 0.85915 1.02298 1.22979 0.96693 0.94335 1.01288 1.20893 0.91634 0.96547 0.96228 1.22036 0.89173 0.88064 1.00823 1.21857 1.00311 0.97606 0.95131 1.20593 0.92549 0.88315 0.93313 1.44311 1.30639 1.52517 1.05651 1.19543 0.95698 1.28701 0.94910 0.91328 1.25827 1.00126 1.00093 0.98928 1.70223 1.28690 1.52180 1.07382 0.85268 0.80325 0.77689 0.77209 1.21521 1.22028 1.19057 1.21122 0.96401 0.95758 0.85612 1.21780 0.99754 0.95281 0.97484 1.68427 1.40861 0.97928 1.14773 1.24099 0.86832 0.95516 0.89174 1.20754 1.00407 0.87662 1.05221 1.68197 1.10033 1.30656 1.14488 0.87706 0.88798 0.88321 0.81995 0.91306 0.86568 0.89127 0.87679 0.91876 0.93930 0.92322 0.91435 0.92996 0.99557 0.94289 0.92625 0.97756 0.90815 0.90041 0.88228 0.88196 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.22 71.24 0.73 -0.26 16 2 C 0.18 3.32 6.83 42.64 0.29 3.61 16 3 C -0.19 -4.14 9.41 22.71 0.21 -3.93 16 4 C 0.13 3.44 6.75 41.98 0.28 3.72 16 5 C 0.57 18.80 7.86 86.96 0.68 19.48 16 6 O -0.57 -22.53 16.75 -3.66 -0.06 -22.59 16 7 N -0.59 -18.25 3.33 -814.52 -2.71 -20.96 16 8 C 0.11 2.47 5.66 86.96 0.49 2.96 16 9 C -0.12 -2.50 6.00 31.88 0.19 -2.31 16 10 C -0.05 -1.60 0.53 -51.91 -0.03 -1.62 16 11 C 0.12 4.22 5.05 86.49 0.44 4.66 16 12 C -0.11 -4.01 4.78 30.46 0.15 -3.86 16 13 C 0.18 8.74 5.03 86.40 0.43 9.18 16 14 N -0.61 -30.75 2.98 -698.60 -2.08 -32.84 16 15 C -0.26 -14.31 9.57 84.03 0.80 -13.50 16 16 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 17 C -0.05 -3.11 4.90 84.86 0.42 -2.70 16 18 N -0.94 -57.12 11.20 21.65 0.24 -56.87 16 19 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.14 5.66 6.24 86.41 0.54 6.20 16 24 C -0.10 -3.24 4.70 30.46 0.14 -3.10 16 25 N -0.50 -11.43 6.69 -177.09 -1.18 -12.61 16 26 C 0.31 5.92 7.64 138.79 1.06 6.99 16 27 C -0.08 -0.88 10.31 71.24 0.73 -0.15 16 28 N -0.52 -10.03 10.25 -176.05 -1.81 -11.83 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.16 3.40 7.74 -2.91 -0.02 3.38 16 33 H 0.07 1.64 7.74 -2.39 -0.02 1.62 16 34 H 0.12 2.40 5.91 -2.39 -0.01 2.39 16 35 H 0.09 1.70 8.01 -2.39 -0.02 1.68 16 36 H 0.10 1.91 8.01 -2.39 -0.02 1.89 16 37 H 0.06 2.24 7.59 -2.39 -0.02 2.22 16 38 H 0.04 1.82 6.08 -2.38 -0.01 1.80 16 39 H 0.06 2.00 7.47 -2.39 -0.02 1.99 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.05 2.91 6.02 -2.39 -0.01 2.89 16 42 H -0.01 -0.74 6.53 -2.39 -0.02 -0.75 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 45 H 0.00 0.20 7.48 -2.39 -0.02 0.18 16 46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.08 2.11 8.10 -2.39 -0.02 2.10 16 48 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.48 389.50 2.94 -71.54 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.94 Total: 13.35 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 7.57 Total: 25.37 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -7.54 Total: -135.12 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.06 Total: -22.59 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.48 2.94 -71.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040882664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.195 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds