Wall clock time and date at job start Wed Apr 1 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31883 * 118.95158 * 2 1 4 4 C 1.32134 * 120.96219 * 180.02562 * 3 2 1 5 5 C 1.39964 * 118.92980 * 359.97438 * 4 3 2 6 6 C 1.47827 * 120.94187 * 180.02562 * 5 4 3 7 7 O 1.21554 * 119.99951 * 138.70897 * 6 5 4 8 8 N 1.34776 * 119.99836 * 318.70910 * 6 5 4 9 9 C 1.47482 * 125.66618 * 4.81845 * 8 6 5 10 10 C 1.55017 * 104.90274 * 204.00199 * 9 8 6 11 11 C 1.54515 * 101.53386 * 323.61616 * 10 9 8 12 12 C 1.47179 * 125.65885 * 184.79751 * 8 6 5 13 13 C 1.52269 * 110.20537 * 276.40885 * 11 10 9 14 14 C 1.53323 * 109.42105 * 177.81056 * 13 11 10 15 15 N 1.46925 * 108.70341 * 53.51098 * 14 13 11 16 16 C 1.36933 * 120.55957 * 125.75022 * 15 14 13 17 17 H 1.08009 * 119.99833 * 210.25204 * 16 15 14 18 18 C 1.38817 * 120.00263 * 30.52048 * 16 15 14 19 19 N 1.31613 * 120.00013 * 10.84277 * 18 16 15 20 20 Si 1.86803 * 119.99893 * 190.84257 * 18 16 15 21 21 H 1.48500 * 109.47002 * 60.00272 * 20 18 16 22 22 H 1.48494 * 109.46853 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46867 * 300.00020 * 20 18 16 24 24 C 1.46921 * 118.87467 * 306.01545 * 15 14 13 25 25 C 1.52271 * 110.20290 * 153.22504 * 11 10 9 26 26 C 1.39934 * 118.11565 * 0.27836 * 5 4 3 27 27 C 1.50701 * 120.53434 * 179.72391 * 26 5 4 28 28 N 1.31855 * 118.95089 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47106 * 90.00740 * 1 2 3 30 30 H 1.09006 * 109.47367 * 210.00265 * 1 2 3 31 31 H 1.08999 * 109.47243 * 330.00031 * 1 2 3 32 32 H 1.08004 * 120.53280 * 180.02562 * 4 3 2 33 33 H 1.09003 * 110.35322 * 322.86000 * 9 8 6 34 34 H 1.08995 * 110.35086 * 85.03586 * 9 8 6 35 35 H 1.09001 * 111.01201 * 205.55733 * 10 9 8 36 36 H 1.08996 * 111.01886 * 81.68273 * 10 9 8 37 37 H 1.09000 * 109.91035 * 59.14427 * 12 8 6 38 38 H 1.08996 * 110.06522 * 297.96750 * 12 8 6 39 39 H 1.09002 * 109.47792 * 57.83212 * 13 11 10 40 40 H 1.08995 * 109.48400 * 297.79480 * 13 11 10 41 41 H 1.09003 * 109.59589 * 293.74356 * 14 13 11 42 42 H 1.08999 * 109.59490 * 173.28042 * 14 13 11 43 43 H 0.96996 * 119.99919 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.59908 * 173.75407 * 24 15 14 45 45 H 1.09001 * 109.60352 * 294.21780 * 24 15 14 46 46 H 1.08998 * 109.48281 * 302.17350 * 25 11 10 47 47 H 1.08995 * 109.48240 * 62.20058 * 25 11 10 48 48 H 1.08999 * 109.47189 * 91.50619 * 27 26 5 49 49 H 1.08997 * 109.46921 * 211.50375 * 27 26 5 50 50 H 1.09000 * 109.47230 * 331.51229 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6638 -0.0001 -0.0005 7 8 6.2716 -0.7911 0.6942 8 7 6.3377 0.8769 -0.7707 9 6 5.7336 1.9514 -1.5804 10 6 6.7705 2.2409 -2.6958 11 6 8.1026 2.0554 -1.9351 12 6 7.7987 0.9215 -0.9430 13 6 8.4670 3.3343 -1.1933 14 6 9.7613 3.1132 -0.4016 15 7 10.7931 2.6075 -1.3173 16 6 12.0026 3.2411 -1.4215 17 1 12.5449 3.2192 -2.3553 18 6 12.5342 3.9068 -0.3255 19 7 11.9915 3.7544 0.8638 20 14 14.0198 5.0190 -0.5387 21 1 13.6905 6.1070 -1.4942 22 1 14.3901 5.6072 0.7735 23 1 15.1601 4.2263 -1.0648 24 6 10.5030 1.4140 -2.1234 25 6 9.2061 1.6428 -2.8998 26 6 3.4660 -1.2003 -0.0059 27 6 4.1856 -2.5244 -0.0125 28 7 2.1453 -1.1538 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.9816 2.1493 -0.0001 33 1 4.7926 1.6148 -2.0156 34 1 5.5721 2.8403 -0.9707 35 1 6.6710 3.2610 -3.0667 36 1 6.6813 1.5207 -3.5091 37 1 8.1543 -0.0277 -1.3439 38 1 8.2819 1.1249 0.0126 39 1 7.6621 3.5986 -0.5074 40 1 8.6133 4.1416 -1.9108 41 1 9.5858 2.3845 0.3898 42 1 10.0894 4.0572 0.0335 43 1 12.3632 4.2193 1.6297 44 1 11.3201 1.2379 -2.8231 45 1 10.3866 0.5501 -1.4690 46 1 8.9187 0.7229 -3.4089 47 1 9.3599 2.4324 -3.6353 48 1 4.3357 -2.8614 1.0132 49 1 3.5891 -3.2594 -0.5528 50 1 5.1525 -2.4100 -0.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040884958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:29 Heat of formation + Delta-G solvation = 35.976737 kcal Electronic energy + Delta-G solvation = -31005.586984 eV Core-core repulsion = 27033.330413 eV Total energy + Delta-G solvation = -3972.256571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.66888 -40.26594 -38.48578 -36.02090 -34.75838 -33.94459 -33.03501 -31.19150 -30.04563 -29.58589 -29.41716 -28.95255 -26.48346 -24.98611 -24.06973 -22.96718 -22.60177 -22.23488 -20.74003 -20.00608 -18.28712 -18.26741 -17.27474 -16.56803 -16.31759 -16.20784 -15.60649 -15.41936 -14.93613 -14.36706 -14.05566 -13.99687 -13.81517 -13.58394 -13.37813 -13.22598 -13.18549 -13.01102 -12.78435 -12.74480 -12.66888 -12.56017 -12.30600 -12.06050 -11.82493 -11.66482 -11.39174 -11.20919 -10.94930 -10.83399 -10.75069 -10.52557 -10.27333 -10.20965 -9.98245 -9.86127 -9.65117 -9.60846 -9.54756 -9.44023 -8.65770 -8.46721 -6.63320 -5.78680 -3.25994 0.23333 0.70426 2.54685 2.82927 3.36290 3.37053 3.42798 3.43288 3.51436 3.68893 4.05592 4.20636 4.47640 4.55484 4.62152 4.71915 4.85148 4.95523 5.04205 5.15124 5.22577 5.26877 5.28311 5.37116 5.37264 5.40941 5.45586 5.56406 5.60742 5.66436 5.78015 5.84631 5.89866 6.00898 6.05590 6.05688 6.16138 6.20632 6.27939 6.44081 6.56427 6.59280 6.61266 6.71438 6.81276 6.95313 7.35537 7.41317 7.68824 7.70390 7.77521 8.00255 8.46666 9.21689 9.83417 10.40489 11.29054 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002455 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.878121 B =11404.623647 C =11534.008633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.333 3.667 3 N -0.525 5.525 4 C 0.185 3.815 5 C -0.240 4.240 6 C 0.580 3.420 7 O -0.524 6.524 8 N -0.606 5.606 9 C 0.094 3.906 10 C -0.126 4.126 11 C -0.055 4.055 12 C 0.118 3.882 13 C -0.128 4.128 14 C 0.169 3.831 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.905 5.905 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.143 3.857 25 C -0.118 4.118 26 C 0.231 3.769 27 C -0.107 4.107 28 N -0.522 5.522 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.092 0.908 43 H 0.255 0.745 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.166 -6.230 -5.597 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 N -0.239 5.239 4 C 0.019 3.981 5 C -0.247 4.247 6 C 0.367 3.633 7 O -0.401 6.401 8 N -0.339 5.339 9 C -0.029 4.029 10 C -0.164 4.164 11 C -0.056 4.056 12 C -0.003 4.003 13 C -0.167 4.167 14 C 0.043 3.957 15 N -0.314 5.314 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.195 4.195 19 N -0.550 5.550 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.016 3.984 25 C -0.157 4.157 26 C 0.085 3.915 27 C -0.164 4.164 28 N -0.238 5.238 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.794 -6.645 -4.998 23.326 hybrid contribution 1.674 0.781 -0.021 1.848 sum -20.120 -5.864 -5.019 21.549 Atomic orbital electron populations 1.20627 0.85301 1.04462 1.04132 1.23498 0.98447 0.83361 0.88022 1.68327 1.09549 1.30021 1.16037 1.23646 0.89483 0.97923 0.87071 1.21581 0.96062 0.96485 1.10622 1.17350 0.85466 0.80678 0.79833 1.90825 1.69224 1.39460 1.40566 1.48508 1.08759 1.31366 1.45298 1.22573 0.97110 0.90193 0.93040 1.22892 0.94354 1.02591 0.96592 1.20996 0.94064 0.95729 0.94806 1.22219 0.77987 0.99051 1.01072 1.22134 1.00313 0.94889 0.99402 1.20883 0.84434 1.00373 0.89965 1.43981 1.12924 1.27227 1.47222 1.19138 0.96128 1.28078 0.94834 0.91856 1.25137 0.98117 1.01407 0.94887 1.69951 1.42245 1.44447 0.98322 0.86343 0.82803 0.80694 0.76716 1.21037 1.21638 1.20899 1.20872 0.93878 0.90052 0.93593 1.21848 0.96363 1.00068 0.97426 1.21870 0.88873 0.95378 0.85408 1.20882 0.99821 0.91050 1.04650 1.68217 1.08987 1.30161 1.16424 0.89266 0.89380 0.89310 0.80787 0.91217 0.90784 0.89641 0.90834 0.91368 0.89801 0.93313 0.92151 0.96296 0.88971 0.93535 0.92744 0.96384 0.92928 0.91736 0.88633 0.89953 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.31 36.01 0.37 -0.21 16 2 C 0.33 3.58 7.64 -157.07 -1.20 2.38 16 3 N -0.52 -5.96 10.32 -10.39 -0.11 -6.06 16 4 C 0.19 2.07 9.28 -16.78 -0.16 1.92 16 5 C -0.24 -3.03 5.41 -104.69 -0.57 -3.60 16 6 C 0.58 8.52 6.84 -12.34 -0.08 8.43 16 7 O -0.52 -9.33 15.58 5.32 0.08 -9.24 16 8 N -0.61 -8.31 3.33 -171.78 -0.57 -8.88 16 9 C 0.09 1.00 4.95 -2.44 -0.01 0.99 16 10 C -0.13 -1.42 5.99 -24.87 -0.15 -1.56 16 11 C -0.06 -0.81 0.53 -154.09 -0.08 -0.90 16 12 C 0.12 1.86 5.07 -3.31 -0.02 1.84 16 13 C -0.13 -2.21 4.78 -26.94 -0.13 -2.34 16 14 C 0.17 3.84 4.99 -3.64 -0.02 3.82 16 15 N -0.59 -14.19 2.99 -172.43 -0.51 -14.70 16 16 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 17 H 0.06 1.66 7.85 -52.48 -0.41 1.25 16 18 C 0.00 0.08 5.05 -17.43 -0.09 -0.01 16 19 N -0.91 -25.89 10.98 55.49 0.61 -25.28 16 20 Si 0.90 21.40 29.57 -169.99 -5.03 16.38 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.14 2.84 6.21 -3.87 -0.02 2.81 16 25 C -0.12 -1.85 4.69 -27.16 -0.13 -1.97 16 26 C 0.23 2.83 6.86 -81.82 -0.56 2.27 16 27 C -0.11 -1.13 9.25 36.01 0.33 -0.80 16 28 N -0.52 -6.18 10.26 -6.67 -0.07 -6.24 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.18 1.61 6.07 -52.48 -0.32 1.29 16 33 H 0.07 0.65 6.79 -51.93 -0.35 0.30 16 34 H 0.07 0.72 6.98 -51.93 -0.36 0.35 16 35 H 0.09 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 37 H 0.07 1.10 7.59 -51.93 -0.39 0.70 16 38 H 0.08 1.57 6.07 -51.93 -0.32 1.26 16 39 H 0.05 0.77 7.49 -51.93 -0.39 0.38 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.46 6.53 -51.93 -0.34 0.13 16 42 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 45 H 0.02 0.37 7.47 -51.93 -0.39 -0.02 16 46 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 1.01 6.55 -51.93 -0.34 0.67 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -31.65 384.53 -10.14 -41.79 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.68 Total: 0.26 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.65 Total: 6.20 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.65 Total: -61.17 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.65 -10.14 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040884958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.766 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds