Wall clock time and date at job start Wed Apr 1 2020 04:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32135 * 119.90130 * 2 1 4 4 C 1.32086 * 120.07238 * 179.74892 * 3 2 1 5 5 C 1.50702 * 120.06336 * 180.25375 * 4 3 2 6 6 C 1.39441 * 119.86814 * 0.52621 * 4 3 2 7 7 C 1.48148 * 120.09632 * 179.75420 * 6 4 3 8 8 O 1.21527 * 119.99821 * 354.18631 * 7 6 4 9 9 N 1.34776 * 120.00294 * 174.18212 * 7 6 4 10 10 C 1.47561 * 125.67294 * 359.69263 * 9 7 6 11 11 C 1.55182 * 105.00718 * 156.39687 * 10 9 7 12 12 C 1.53662 * 101.41340 * 35.49894 * 11 10 9 13 13 C 1.53653 * 111.42036 * 204.96309 * 12 11 10 14 14 C 1.55187 * 101.42056 * 272.73639 * 13 12 11 15 15 N 1.47554 * 105.00380 * 324.50439 * 14 13 12 16 16 C 1.36940 * 125.67504 * 203.82595 * 15 14 13 17 17 H 1.07996 * 120.00394 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99816 * 0.04260 * 16 15 14 19 19 N 1.31622 * 120.00045 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00134 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46749 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47352 * 119.99926 * 20 18 16 23 23 H 1.48503 * 109.47015 * 240.00347 * 20 18 16 24 24 C 1.47400 * 108.65332 * 23.86344 * 15 14 13 25 25 C 1.47408 * 125.67637 * 179.97438 * 9 7 6 26 26 N 1.32998 * 119.80600 * 359.47231 * 6 4 3 27 27 C 1.31799 * 119.93069 * 0.25842 * 26 6 4 28 28 C 1.50696 * 119.93860 * 179.97438 * 27 26 6 29 29 H 1.08999 * 109.47577 * 269.98262 * 1 2 3 30 30 H 1.09005 * 109.46853 * 29.98203 * 1 2 3 31 31 H 1.09001 * 109.47187 * 149.97499 * 1 2 3 32 32 H 1.08991 * 109.47091 * 263.67942 * 5 4 3 33 33 H 1.08994 * 109.46992 * 23.68875 * 5 4 3 34 34 H 1.09007 * 109.46827 * 143.68520 * 5 4 3 35 35 H 1.08994 * 110.33747 * 275.28429 * 10 9 7 36 36 H 1.09006 * 110.33271 * 37.51881 * 10 9 7 37 37 H 1.08994 * 111.03764 * 277.46171 * 11 10 9 38 38 H 1.08998 * 111.06764 * 153.53998 * 11 10 9 39 39 H 1.09005 * 111.03174 * 30.76820 * 13 12 11 40 40 H 1.08994 * 111.03783 * 154.69693 * 13 12 11 41 41 H 1.08997 * 110.33402 * 205.62034 * 14 13 12 42 42 H 1.08999 * 110.42136 * 83.43033 * 14 13 12 43 43 H 0.96993 * 119.99924 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.99023 * 238.53720 * 24 15 14 45 45 H 1.09005 * 109.98668 * 117.23088 * 24 15 14 46 46 H 1.08999 * 109.98646 * 301.19823 * 25 9 7 47 47 H 1.09007 * 109.98222 * 62.46531 * 25 9 7 48 48 H 1.09004 * 109.46759 * 90.00574 * 28 27 26 49 49 H 1.09000 * 109.47246 * 210.00195 * 28 27 26 50 50 H 1.08996 * 109.47339 * 330.00471 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4866 1.1494 0.0050 5 6 4.2376 2.4559 0.0108 6 6 4.1846 -0.0577 -0.0008 7 6 5.6661 -0.0591 -0.0007 8 8 6.2747 0.9879 -0.1022 9 7 6.3389 -1.2215 0.1120 10 6 5.7298 -2.5586 0.2482 11 6 6.8122 -3.5470 -0.2615 12 6 8.1003 -2.8641 0.2238 13 6 9.3080 -3.2684 -0.6359 14 6 9.7766 -4.5621 0.0818 15 7 9.5289 -4.3150 1.5152 16 6 10.1715 -4.9326 2.5548 17 1 9.9163 -4.6808 3.5735 18 6 11.1514 -5.8820 2.2993 19 7 11.4624 -6.1891 1.0577 20 14 12.0276 -6.7250 3.7173 21 1 11.4982 -6.2070 5.0044 22 1 11.7975 -8.1901 3.6407 23 1 13.4841 -6.4476 3.6343 24 6 8.4739 -3.2934 1.6420 25 6 7.8056 -1.3680 0.1256 26 7 3.5166 -1.2077 -0.0007 27 6 2.1986 -1.2026 -0.0003 28 6 1.4415 -2.5055 -0.0009 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 4.5206 2.7168 -1.0089 33 1 3.6013 3.2389 0.4230 34 1 5.1343 2.3568 0.6226 35 1 5.4925 -2.7622 1.2923 36 1 4.8322 -2.6302 -0.3661 37 1 6.7940 -3.6204 -1.3488 38 1 6.6933 -4.5287 0.1968 39 1 9.0052 -3.4779 -1.6619 40 1 10.0828 -2.5024 -0.6070 41 1 10.8389 -4.7300 -0.0956 42 1 9.1961 -5.4187 -0.2608 43 1 12.1474 -6.8522 0.8792 44 1 8.8492 -2.4379 2.2035 45 1 7.6040 -3.7166 2.1444 46 1 8.2289 -0.9643 -0.7942 47 1 8.2240 -0.8481 0.9876 48 1 1.2592 -2.8202 1.0267 49 1 0.4893 -2.3723 -0.5144 50 1 2.0282 -3.2666 -0.5152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041463368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:16 Heat of formation + Delta-G solvation = 52.747876 kcal Electronic energy + Delta-G solvation = -30745.511951 eV Core-core repulsion = 26773.982631 eV Total energy + Delta-G solvation = -3971.529320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.80692 -40.08012 -38.46776 -35.93078 -35.11134 -34.63080 -32.70149 -30.68723 -30.25842 -29.42649 -29.24086 -28.28596 -26.66129 -25.46781 -24.17451 -23.49360 -22.58416 -22.13870 -20.33522 -19.87779 -18.81051 -18.49913 -17.00147 -16.61392 -16.22534 -15.95905 -15.52817 -15.34355 -14.83228 -14.43888 -14.21792 -13.93892 -13.86648 -13.68552 -13.49689 -13.40599 -13.00620 -12.97008 -12.89625 -12.55107 -12.47949 -12.36758 -12.21827 -12.08771 -11.90543 -11.85182 -11.48736 -11.33317 -11.09791 -11.01360 -10.88365 -10.73987 -10.18764 -10.13189 -10.01020 -9.92935 -9.74873 -9.47057 -9.23875 -9.21247 -8.64952 -8.50285 -6.82879 -5.65450 -3.06604 0.11547 0.71638 2.55035 2.82033 3.39554 3.42186 3.45296 3.47621 3.58038 3.64451 4.01256 4.23999 4.48246 4.56139 4.57817 4.84416 4.86381 4.94378 4.96849 5.06467 5.08699 5.20827 5.31737 5.41823 5.45912 5.48440 5.51047 5.51851 5.54850 5.66707 5.75974 5.84437 5.88429 5.91132 6.02085 6.09737 6.19556 6.24636 6.30018 6.33002 6.39735 6.55906 6.66220 6.75764 6.84805 6.86869 7.35296 7.51637 7.52025 7.63077 7.85878 8.03166 8.35835 9.22188 9.82705 10.48027 11.38664 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.002458 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.781726 B =11389.081542 C =12023.488129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.105 3.895 3 N -0.443 5.443 4 C 0.138 3.862 5 C -0.105 4.105 6 C 0.030 3.970 7 C 0.584 3.416 8 O -0.531 6.531 9 N -0.592 5.592 10 C 0.098 3.902 11 C -0.116 4.116 12 C -0.082 4.082 13 C -0.131 4.131 14 C 0.155 3.845 15 N -0.604 5.604 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.152 3.848 25 C 0.124 3.876 26 N -0.400 5.400 27 C 0.066 3.934 28 C -0.103 4.103 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.013 0.987 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.023 0.977 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.250 10.856 -5.258 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.037 4.037 3 N -0.159 5.159 4 C -0.002 4.002 5 C -0.163 4.163 6 C -0.111 4.111 7 C 0.370 3.630 8 O -0.409 6.409 9 N -0.323 5.323 10 C -0.024 4.024 11 C -0.154 4.154 12 C -0.083 4.083 13 C -0.170 4.170 14 C 0.031 3.969 15 N -0.330 5.330 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.026 3.974 25 C 0.002 3.998 26 N -0.117 5.117 27 C -0.077 4.077 28 C -0.161 4.161 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.741 11.333 -5.263 25.075 hybrid contribution 0.395 -0.590 0.785 1.058 sum -21.345 10.743 -4.478 24.312 Atomic orbital electron populations 1.20844 0.87429 1.04282 1.03841 1.22420 0.98561 0.88954 0.93797 1.68316 1.07805 1.28843 1.10934 1.22331 0.89699 0.96622 0.91511 1.21052 1.00047 0.90530 1.04627 1.21915 0.95586 0.90173 1.03407 1.17195 0.84731 0.83015 0.78027 1.90744 1.68493 1.30218 1.51396 1.48517 1.08016 1.06600 1.69200 1.22837 0.97439 0.80211 1.01905 1.22689 0.93107 0.98705 1.00898 1.21556 0.96105 0.92240 0.98438 1.22874 0.95511 1.01107 0.97476 1.21954 1.02924 0.90104 0.81965 1.44628 1.41076 1.44657 1.02642 1.19120 1.13635 1.15623 0.86469 0.90510 1.24778 0.99683 0.99633 0.96634 1.69810 1.34730 1.35964 1.16609 0.86011 0.79374 0.79101 0.81100 1.20569 1.21787 1.21759 1.21121 0.91872 0.92387 0.92005 1.21993 0.78756 0.96728 1.02320 1.68447 1.08104 1.28026 1.07124 1.22225 0.90300 0.96972 0.98239 1.20790 0.99287 0.92140 1.03842 0.89487 0.89940 0.89557 0.89519 0.91029 0.87389 0.91579 0.87867 0.90930 0.89302 0.92008 0.91853 0.87733 0.96895 0.93808 0.95744 0.95887 0.90946 0.90901 0.89664 0.89848 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 9.78 36.01 0.35 -0.21 16 2 C 0.11 0.99 6.79 -82.28 -0.56 0.44 16 3 N -0.44 -5.19 10.34 -5.23 -0.05 -5.24 16 4 C 0.14 1.75 6.82 -82.03 -0.56 1.19 16 5 C -0.11 -1.18 8.89 36.01 0.32 -0.86 16 6 C 0.03 0.41 6.71 -82.84 -0.56 -0.14 16 7 C 0.58 8.93 7.78 -12.19 -0.09 8.83 16 8 O -0.53 -8.85 13.66 5.34 0.07 -8.77 16 9 N -0.59 -8.91 3.34 -171.85 -0.57 -9.48 16 10 C 0.10 1.34 6.02 -2.31 -0.01 1.33 16 11 C -0.12 -1.71 5.85 -25.23 -0.15 -1.86 16 12 C -0.08 -1.40 0.61 -154.02 -0.09 -1.49 16 13 C -0.13 -2.41 5.93 -25.23 -0.15 -2.56 16 14 C 0.16 3.68 5.83 -2.31 -0.01 3.66 16 15 N -0.60 -15.23 3.41 -170.41 -0.58 -15.81 16 16 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.67 10.10 55.49 0.56 -26.11 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.15 3.14 6.40 -3.65 -0.02 3.11 16 25 C 0.12 1.96 6.13 -3.65 -0.02 1.94 16 26 N -0.40 -4.89 6.70 -5.89 -0.04 -4.93 16 27 C 0.07 0.64 6.79 -82.43 -0.56 0.08 16 28 C -0.10 -0.61 9.78 36.00 0.35 -0.25 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.26 5.94 -51.93 -0.31 -0.04 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.36 5.84 -51.92 -0.30 1.05 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.31 5.75 -51.93 -0.30 1.01 16 37 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 38 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 39 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 40 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 41 H 0.10 2.82 5.89 -51.93 -0.31 2.51 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.02 0.52 7.44 -51.93 -0.39 0.13 16 45 H 0.02 0.48 7.78 -51.93 -0.40 0.07 16 46 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 47 H 0.07 1.20 7.42 -51.93 -0.39 0.82 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.29 5.94 -51.93 -0.31 -0.02 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -32.21 387.05 -9.50 -41.71 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.68 Total: -0.71 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -2.02 Total: 6.51 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.69 Total: -61.58 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.21 -9.50 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041463368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.460 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds