Wall clock time and date at job start Wed Apr 1 2020 04:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32135 * 119.90130 * 2 1 4 4 C 1.32086 * 120.07238 * 179.74892 * 3 2 1 5 5 C 1.50702 * 120.06336 * 180.25375 * 4 3 2 6 6 C 1.39441 * 119.86814 * 0.52621 * 4 3 2 7 7 C 1.48148 * 120.09632 * 179.75420 * 6 4 3 8 8 O 1.21527 * 119.99821 * 354.18631 * 7 6 4 9 9 N 1.34776 * 120.00294 * 174.18212 * 7 6 4 10 10 C 1.47561 * 125.67294 * 359.69263 * 9 7 6 11 11 C 1.55182 * 105.00718 * 156.39687 * 10 9 7 12 12 C 1.53662 * 101.41340 * 35.49894 * 11 10 9 13 13 C 1.53653 * 111.42036 * 204.96309 * 12 11 10 14 14 C 1.55187 * 101.42056 * 272.73639 * 13 12 11 15 15 N 1.47554 * 105.00380 * 324.50439 * 14 13 12 16 16 C 1.36940 * 125.67504 * 203.82595 * 15 14 13 17 17 H 1.07996 * 120.00394 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99816 * 0.04260 * 16 15 14 19 19 N 1.31622 * 120.00045 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00134 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46749 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47352 * 119.99926 * 20 18 16 23 23 H 1.48503 * 109.47015 * 240.00347 * 20 18 16 24 24 C 1.47400 * 108.65332 * 23.86344 * 15 14 13 25 25 C 1.47408 * 125.67637 * 179.97438 * 9 7 6 26 26 N 1.32998 * 119.80600 * 359.47231 * 6 4 3 27 27 C 1.31799 * 119.93069 * 0.25842 * 26 6 4 28 28 C 1.50696 * 119.93860 * 179.97438 * 27 26 6 29 29 H 1.08999 * 109.47577 * 269.98262 * 1 2 3 30 30 H 1.09005 * 109.46853 * 29.98203 * 1 2 3 31 31 H 1.09001 * 109.47187 * 149.97499 * 1 2 3 32 32 H 1.08991 * 109.47091 * 263.67942 * 5 4 3 33 33 H 1.08994 * 109.46992 * 23.68875 * 5 4 3 34 34 H 1.09007 * 109.46827 * 143.68520 * 5 4 3 35 35 H 1.08994 * 110.33747 * 275.28429 * 10 9 7 36 36 H 1.09006 * 110.33271 * 37.51881 * 10 9 7 37 37 H 1.08994 * 111.03764 * 277.46171 * 11 10 9 38 38 H 1.08998 * 111.06764 * 153.53998 * 11 10 9 39 39 H 1.09005 * 111.03174 * 30.76820 * 13 12 11 40 40 H 1.08994 * 111.03783 * 154.69693 * 13 12 11 41 41 H 1.08997 * 110.33402 * 205.62034 * 14 13 12 42 42 H 1.08999 * 110.42136 * 83.43033 * 14 13 12 43 43 H 0.96993 * 119.99924 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.99023 * 238.53720 * 24 15 14 45 45 H 1.09005 * 109.98668 * 117.23088 * 24 15 14 46 46 H 1.08999 * 109.98646 * 301.19823 * 25 9 7 47 47 H 1.09007 * 109.98222 * 62.46531 * 25 9 7 48 48 H 1.09004 * 109.46759 * 90.00574 * 28 27 26 49 49 H 1.09000 * 109.47246 * 210.00195 * 28 27 26 50 50 H 1.08996 * 109.47339 * 330.00471 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4866 1.1494 0.0050 5 6 4.2376 2.4559 0.0108 6 6 4.1846 -0.0577 -0.0008 7 6 5.6661 -0.0591 -0.0007 8 8 6.2747 0.9879 -0.1022 9 7 6.3389 -1.2215 0.1120 10 6 5.7298 -2.5586 0.2482 11 6 6.8122 -3.5470 -0.2615 12 6 8.1003 -2.8641 0.2238 13 6 9.3080 -3.2684 -0.6359 14 6 9.7766 -4.5621 0.0818 15 7 9.5289 -4.3150 1.5152 16 6 10.1715 -4.9326 2.5548 17 1 9.9163 -4.6808 3.5735 18 6 11.1514 -5.8820 2.2993 19 7 11.4624 -6.1891 1.0577 20 14 12.0276 -6.7250 3.7173 21 1 11.4982 -6.2070 5.0044 22 1 11.7975 -8.1901 3.6407 23 1 13.4841 -6.4476 3.6343 24 6 8.4739 -3.2934 1.6420 25 6 7.8056 -1.3680 0.1256 26 7 3.5166 -1.2077 -0.0007 27 6 2.1986 -1.2026 -0.0003 28 6 1.4415 -2.5055 -0.0009 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 4.5206 2.7168 -1.0089 33 1 3.6013 3.2389 0.4230 34 1 5.1343 2.3568 0.6226 35 1 5.4925 -2.7622 1.2923 36 1 4.8322 -2.6302 -0.3661 37 1 6.7940 -3.6204 -1.3488 38 1 6.6933 -4.5287 0.1968 39 1 9.0052 -3.4779 -1.6619 40 1 10.0828 -2.5024 -0.6070 41 1 10.8389 -4.7300 -0.0956 42 1 9.1961 -5.4187 -0.2608 43 1 12.1474 -6.8522 0.8792 44 1 8.8492 -2.4379 2.2035 45 1 7.6040 -3.7166 2.1444 46 1 8.2289 -0.9643 -0.7942 47 1 8.2240 -0.8481 0.9876 48 1 1.2592 -2.8202 1.0267 49 1 0.4893 -2.3723 -0.5144 50 1 2.0282 -3.2666 -0.5152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041463368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:15 Heat of formation + Delta-G solvation = 33.221476 kcal Electronic energy + Delta-G solvation = -30746.358679 eV Core-core repulsion = 26773.982631 eV Total energy + Delta-G solvation = -3972.376048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.67359 -41.33406 -39.77836 -37.36424 -36.07121 -35.39519 -34.46937 -32.16343 -31.19396 -30.77325 -30.23891 -29.55850 -27.77853 -27.04666 -25.34527 -24.59525 -23.79419 -23.05791 -22.19478 -20.93812 -20.22768 -19.40599 -18.84187 -17.83376 -17.24336 -17.09173 -16.83305 -16.34682 -16.24700 -15.95002 -15.66136 -15.37574 -14.74490 -14.62131 -14.35103 -14.17689 -14.10550 -13.87440 -13.83955 -13.75268 -13.62726 -13.54803 -13.32848 -13.20854 -13.12661 -12.98802 -12.93525 -12.72448 -12.61995 -12.48610 -12.17767 -11.98951 -11.88151 -11.76535 -11.53154 -11.47353 -11.27669 -11.07310 -10.73117 -10.14604 -10.05814 -9.63877 -8.87433 -7.76982 -5.20645 -0.74763 -0.10280 1.46721 1.47421 1.52016 1.57644 1.70709 2.49379 2.52926 2.73637 2.89497 3.21832 3.28906 3.37784 3.53809 3.59447 3.63025 3.80696 3.86526 3.93469 4.15881 4.24501 4.29006 4.33830 4.55287 4.60281 4.65853 4.67787 4.68467 4.73881 4.75200 4.78764 4.79615 4.84309 4.87594 4.98568 5.00490 5.06525 5.08324 5.10013 5.21170 5.24130 5.31403 5.32591 5.47273 5.49265 5.66576 5.83832 6.05524 6.31135 6.32607 6.56955 6.89093 7.12024 7.78357 8.42734 9.25047 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.002458 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.781726 B =11389.081542 C =12023.488129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 N -0.459 5.459 4 C 0.126 3.874 5 C -0.099 4.099 6 C 0.004 3.996 7 C 0.581 3.419 8 O -0.552 6.552 9 N -0.596 5.596 10 C 0.110 3.890 11 C -0.109 4.109 12 C -0.072 4.072 13 C -0.116 4.116 14 C 0.159 3.841 15 N -0.625 5.625 16 C -0.237 4.237 17 H 0.077 0.923 18 C -0.066 4.066 19 N -0.947 5.947 20 Si 0.978 3.022 21 H -0.269 1.269 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.151 3.849 25 C 0.131 3.869 26 N -0.414 5.414 27 C 0.066 3.934 28 C -0.102 4.102 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.069 0.931 42 H -0.006 1.006 43 H 0.247 0.753 44 H 0.018 0.982 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.114 0.886 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.317 10.851 -5.466 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.033 4.033 3 N -0.175 5.175 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.135 4.135 7 C 0.369 3.631 8 O -0.432 6.432 9 N -0.327 5.327 10 C -0.012 4.012 11 C -0.147 4.147 12 C -0.073 4.073 13 C -0.154 4.154 14 C 0.035 3.965 15 N -0.351 5.351 16 C -0.366 4.366 17 H 0.095 0.905 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.807 3.193 21 H -0.194 1.194 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.026 3.974 25 C 0.009 3.991 26 N -0.131 5.131 27 C -0.079 4.079 28 C -0.159 4.159 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.012 0.988 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.043 0.957 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.116 0.884 49 H 0.132 0.868 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.808 11.359 -5.467 27.827 hybrid contribution 1.195 -0.594 0.875 1.596 sum -23.613 10.765 -4.592 26.355 Atomic orbital electron populations 1.21045 0.84130 1.05818 1.05247 1.23202 1.00588 0.88254 0.91250 1.68397 1.07222 1.30086 1.11767 1.22427 0.90364 0.96608 0.91856 1.20951 0.99542 0.90761 1.04353 1.21623 0.94541 0.91157 1.06183 1.17520 0.85675 0.82570 0.77314 1.90726 1.69294 1.30872 1.52292 1.48541 1.07523 1.07157 1.69493 1.22795 0.97382 0.79111 1.01916 1.22657 0.91899 0.98251 1.01865 1.21383 0.96653 0.93470 0.95784 1.22724 0.95980 0.98212 0.98529 1.21725 1.00586 0.92145 0.82088 1.44911 1.42072 1.45290 1.02817 1.19448 1.13945 1.15871 0.87311 0.90512 1.25589 1.00616 1.00583 0.99034 1.70054 1.35083 1.36308 1.18272 0.85010 0.77843 0.77736 0.78741 1.19369 1.21769 1.21876 1.21231 0.90669 0.91021 0.94435 1.21788 0.79710 0.95391 1.02232 1.68367 1.09500 1.27497 1.07728 1.22927 0.89587 0.98798 0.96613 1.20969 1.00013 0.89894 1.05034 0.87837 0.89776 0.86662 0.89503 0.89678 0.89067 0.91978 0.86398 0.89188 0.90151 0.89221 0.91841 0.91258 0.98751 0.94315 0.96357 0.95666 0.90268 0.91948 0.88395 0.86787 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.78 71.24 0.70 0.01 16 2 C 0.11 1.79 6.79 42.63 0.29 2.08 16 3 N -0.46 -10.04 10.34 -170.47 -1.76 -11.80 16 4 C 0.13 3.14 6.82 42.81 0.29 3.43 16 5 C -0.10 -2.24 8.89 71.24 0.63 -1.60 16 6 C 0.00 0.10 6.71 41.89 0.28 0.38 16 7 C 0.58 17.76 7.78 86.88 0.68 18.43 16 8 O -0.55 -18.73 13.66 -3.80 -0.05 -18.79 16 9 N -0.60 -17.56 3.34 -815.91 -2.73 -20.29 16 10 C 0.11 2.85 6.02 86.92 0.52 3.38 16 11 C -0.11 -3.06 5.85 31.57 0.18 -2.87 16 12 C -0.07 -2.40 0.61 -51.87 -0.03 -2.44 16 13 C -0.12 -4.21 5.93 31.56 0.19 -4.03 16 14 C 0.16 7.73 5.83 86.93 0.51 8.24 16 15 N -0.62 -32.20 3.41 -693.06 -2.36 -34.56 16 16 C -0.24 -13.37 10.28 84.03 0.86 -12.51 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 19 N -0.95 -56.30 10.10 21.65 0.22 -56.08 16 20 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 C 0.15 6.31 6.40 86.14 0.55 6.86 16 25 C 0.13 4.09 6.13 86.14 0.53 4.61 16 26 N -0.41 -9.46 6.70 -172.54 -1.16 -10.61 16 27 C 0.07 1.09 6.79 42.68 0.29 1.38 16 28 C -0.10 -0.80 9.78 71.23 0.70 -0.11 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.12 0.10 5.94 -2.39 -0.01 0.08 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 2.38 5.84 -2.38 -0.01 2.36 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.12 2.76 5.75 -2.38 -0.01 2.75 16 37 H 0.09 2.26 7.82 -2.39 -0.02 2.24 16 38 H 0.08 2.43 7.94 -2.39 -0.02 2.42 16 39 H 0.09 2.77 7.78 -2.38 -0.02 2.76 16 40 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 41 H 0.07 3.88 5.89 -2.39 -0.01 3.86 16 42 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.02 0.79 7.44 -2.39 -0.02 0.77 16 45 H 0.03 1.04 7.78 -2.38 -0.02 1.03 16 46 H 0.08 2.38 7.86 -2.39 -0.02 2.36 16 47 H 0.06 2.08 7.42 -2.38 -0.02 2.06 16 48 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.11 0.19 5.94 -2.39 -0.01 0.18 16 50 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -72.19 387.05 2.77 -69.42 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.95 Total: 12.81 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 7.63 Total: 21.98 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -7.79 Total: -133.36 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -72.19 2.77 -69.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041463368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.643 kcal (2) G-P(sol) polarization free energy of solvation -72.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds