Wall clock time and date at job start Wed Apr 1 2020 04:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32135 * 119.90370 * 2 1 4 4 C 1.32086 * 120.07449 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.06738 * 180.02562 * 4 3 2 6 6 C 1.39442 * 119.87010 * 359.97438 * 4 3 2 7 7 C 1.48153 * 120.09937 * 179.97438 * 6 4 3 8 8 O 1.21516 * 119.99966 * 284.00906 * 7 6 4 9 9 N 1.34774 * 120.00116 * 103.99806 * 7 6 4 10 10 C 1.46595 * 119.75611 * 4.72733 * 9 7 6 11 11 C 1.53496 * 110.93338 * 227.68142 * 10 9 7 12 12 C 1.51975 * 107.37031 * 308.44007 * 11 10 9 13 13 H 1.09001 * 111.57092 * 303.00048 * 12 11 10 14 14 C 1.53697 * 114.99670 * 175.28937 * 12 11 10 15 15 C 1.55300 * 101.81500 * 206.55290 * 14 12 11 16 16 N 1.48160 * 107.04375 * 22.44335 * 15 14 12 17 17 C 1.36938 * 126.39590 * 185.02393 * 16 15 14 18 18 H 1.08006 * 119.99702 * 179.97438 * 17 16 15 19 19 C 1.38805 * 120.00217 * 359.97438 * 17 16 15 20 20 N 1.31616 * 120.00260 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00049 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47121 * 89.99535 * 21 19 17 23 23 H 1.48493 * 109.47030 * 209.99950 * 21 19 17 24 24 H 1.48502 * 109.46743 * 329.99939 * 21 19 17 25 25 C 1.45503 * 107.20181 * 5.00112 * 16 15 14 26 26 H 1.09004 * 109.56355 * 85.84083 * 25 16 15 27 27 C 1.47797 * 119.75725 * 184.99724 * 9 7 6 28 28 N 1.33000 * 119.80933 * 359.97438 * 6 4 3 29 29 C 1.31802 * 119.92758 * 0.02562 * 28 6 4 30 30 C 1.50693 * 119.94116 * 179.97438 * 29 28 6 31 31 H 1.09003 * 109.46977 * 90.00069 * 1 2 3 32 32 H 1.09004 * 109.47285 * 209.99801 * 1 2 3 33 33 H 1.08992 * 109.47046 * 330.00043 * 1 2 3 34 34 H 1.09004 * 109.47126 * 95.21872 * 5 4 3 35 35 H 1.08994 * 109.47049 * 215.22125 * 5 4 3 36 36 H 1.09001 * 109.46949 * 335.22081 * 5 4 3 37 37 H 1.09001 * 109.22530 * 348.08247 * 10 9 7 38 38 H 1.09001 * 109.22969 * 107.43934 * 10 9 7 39 39 H 1.09007 * 109.96543 * 188.90536 * 11 10 9 40 40 H 1.09004 * 109.80152 * 67.88619 * 11 10 9 41 41 H 1.08998 * 110.95951 * 88.42726 * 14 12 11 42 42 H 1.08993 * 110.99170 * 324.69364 * 14 12 11 43 43 H 1.09007 * 109.92086 * 263.09675 * 15 14 12 44 44 H 1.09000 * 110.08739 * 141.88723 * 15 14 12 45 45 H 0.97005 * 119.99990 * 179.97438 * 20 19 17 46 46 H 1.09006 * 110.06529 * 247.94147 * 27 9 7 47 47 H 1.08998 * 110.06476 * 9.50463 * 27 9 7 48 48 H 1.09002 * 109.47330 * 270.02124 * 30 29 28 49 49 H 1.08997 * 109.47031 * 30.01714 * 30 29 28 50 50 H 1.09000 * 109.47241 * 150.02436 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4866 1.1494 -0.0005 5 6 4.2377 2.4558 0.0001 6 6 4.1846 -0.0577 -0.0005 7 6 5.6662 -0.0592 -0.0017 8 8 6.2732 0.1944 -1.0233 9 7 6.3406 -0.3418 1.1304 10 6 5.6065 -0.7480 2.3326 11 6 6.0903 0.0346 3.5612 12 6 7.6038 -0.0925 3.6132 13 1 7.9175 -1.1359 3.6455 14 6 8.2866 0.7254 4.7209 15 6 9.6992 0.9585 4.1192 16 7 9.5754 0.8103 2.6502 17 6 10.5992 0.8408 1.7413 18 1 10.3903 0.7208 0.6884 19 6 11.9053 1.0259 2.1731 20 7 12.1598 1.1726 3.4560 21 14 13.3019 1.0682 0.9330 22 1 13.5174 2.4651 0.4776 23 1 14.5432 0.5574 1.5680 24 1 12.9550 0.2156 -0.2323 25 6 8.1629 0.6258 2.3539 26 1 7.6796 1.5983 2.2594 27 6 7.8145 -0.2339 1.1526 28 7 3.5166 -1.2078 0.0005 29 6 2.1986 -1.2027 0.0010 30 6 1.4414 -2.5056 0.0016 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 4.5002 2.7235 1.0236 35 1 5.1463 2.3527 -0.5930 36 1 3.6097 3.2361 -0.4299 37 1 4.5431 -0.5605 2.1842 38 1 5.7618 -1.8130 2.5052 39 1 5.6515 -0.3854 4.4664 40 1 5.8091 1.0833 3.4652 41 1 8.3468 0.1536 5.6469 42 1 7.7705 1.6718 4.8820 43 1 10.3963 0.2171 4.5098 44 1 10.0491 1.9616 4.3630 45 1 13.0727 1.3016 3.7577 46 1 8.2603 -1.2229 1.2585 47 1 8.1684 0.2411 0.2376 48 1 1.2588 -2.8202 -1.0259 49 1 2.0284 -3.2667 0.5156 50 1 0.4894 -2.3723 0.5154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042144114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:49 Heat of formation + Delta-G solvation = 41.550789 kcal Electronic energy + Delta-G solvation = -31346.017627 eV Core-core repulsion = 27374.002765 eV Total energy + Delta-G solvation = -3972.014862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.76743 -39.99493 -38.26400 -35.50714 -35.22626 -34.60761 -32.92861 -31.31657 -30.59011 -29.92810 -28.93268 -28.47493 -26.46280 -24.74370 -24.22811 -23.40235 -22.29605 -22.18350 -20.27629 -19.92915 -19.23054 -18.43898 -17.39391 -16.59657 -16.23400 -15.62622 -15.44118 -14.93855 -14.77667 -14.42833 -14.33236 -14.00230 -13.84956 -13.63915 -13.46200 -13.36548 -13.31152 -13.07755 -12.88989 -12.76323 -12.49914 -12.36730 -12.26368 -12.06725 -11.93379 -11.79774 -11.55809 -11.36312 -11.08014 -10.94689 -10.82966 -10.76073 -10.25458 -10.14165 -10.00042 -9.89519 -9.67120 -9.52278 -9.27805 -9.06991 -8.63592 -8.52733 -6.87123 -5.72618 -3.06633 0.31686 0.80283 2.43318 2.83726 3.23267 3.42078 3.47800 3.49408 3.63588 3.84049 4.06788 4.24424 4.50254 4.61294 4.63553 4.84129 4.86806 4.94105 5.01436 5.10115 5.12632 5.22305 5.33342 5.35119 5.41910 5.45914 5.48872 5.51047 5.61408 5.63487 5.65918 5.74451 5.85420 5.86284 5.98442 6.03632 6.09398 6.11194 6.13538 6.32416 6.42947 6.52956 6.64572 6.70926 6.95680 7.01298 7.39049 7.45884 7.54169 7.59406 7.80642 8.08598 8.22266 9.18108 9.81045 10.47207 11.39656 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.002913 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.217441 B = 9610.559451 C =10154.369904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.093 3.907 3 N -0.435 5.435 4 C 0.119 3.881 5 C -0.112 4.112 6 C 0.050 3.950 7 C 0.580 3.420 8 O -0.523 6.523 9 N -0.588 5.588 10 C 0.116 3.884 11 C -0.119 4.119 12 C -0.114 4.114 13 H 0.079 0.921 14 C -0.137 4.137 15 C 0.177 3.823 16 N -0.591 5.591 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.005 4.005 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.157 3.843 26 H 0.025 0.975 27 C 0.117 3.883 28 N -0.406 5.406 29 C 0.071 3.929 30 C -0.101 4.101 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.252 0.748 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.727 -4.463 -1.085 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.048 4.048 3 N -0.151 5.151 4 C -0.021 4.021 5 C -0.170 4.170 6 C -0.093 4.093 7 C 0.364 3.636 8 O -0.398 6.398 9 N -0.320 5.320 10 C -0.008 4.008 11 C -0.158 4.158 12 C -0.134 4.134 13 H 0.097 0.903 14 C -0.176 4.176 15 C 0.053 3.947 16 N -0.316 5.316 17 C -0.357 4.357 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.047 3.953 26 H 0.042 0.958 27 C -0.004 4.004 28 N -0.123 5.123 29 C -0.072 4.072 30 C -0.159 4.159 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.064 -4.295 -1.624 24.498 hybrid contribution 0.781 -0.002 -0.563 0.963 sum -23.283 -4.296 -2.188 23.777 Atomic orbital electron populations 1.20809 0.87457 1.04196 1.03717 1.22337 0.98494 0.88853 0.95165 1.68233 1.07612 1.28873 1.10342 1.22184 0.90000 0.96115 0.93808 1.20866 1.00081 0.91833 1.04197 1.21927 0.95999 0.90340 1.01029 1.17663 0.84709 0.77202 0.84038 1.90825 1.68201 1.49084 1.31671 1.48191 1.08086 1.65516 1.10238 1.21581 0.94953 0.99295 0.84925 1.21748 0.96896 1.00581 0.96567 1.22288 0.92782 1.00214 0.98071 0.90296 1.22720 0.99226 0.98565 0.97045 1.21554 0.90381 1.00538 0.82238 1.44166 0.99705 1.84667 1.03053 1.19045 0.85240 1.43002 0.88443 0.90214 1.24778 0.97259 1.01919 0.96209 1.69941 1.18886 1.55695 1.12339 0.86147 0.81890 0.77776 0.80180 1.21566 1.21706 1.20532 1.20986 0.87661 0.94907 0.91706 0.95801 1.21839 0.75664 1.01365 1.01577 1.68312 1.08254 1.28052 1.07649 1.22145 0.90079 0.96932 0.98005 1.20767 0.99229 0.92225 1.03674 0.89675 0.89670 0.89964 0.89350 0.89135 0.89532 0.91509 0.91146 0.90737 0.91448 0.92194 0.92547 0.92611 0.94320 0.93740 0.90606 0.88703 0.89845 0.89950 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 9.78 36.00 0.35 -0.25 16 2 C 0.09 0.95 6.79 -82.28 -0.56 0.39 16 3 N -0.44 -5.39 10.34 -5.23 -0.05 -5.45 16 4 C 0.12 1.61 6.82 -82.04 -0.56 1.05 16 5 C -0.11 -1.35 9.69 36.01 0.35 -1.00 16 6 C 0.05 0.74 4.54 -82.84 -0.38 0.36 16 7 C 0.58 9.97 6.13 -12.19 -0.07 9.90 16 8 O -0.52 -10.65 15.88 5.35 0.09 -10.56 16 9 N -0.59 -9.58 3.01 -173.98 -0.52 -10.10 16 10 C 0.12 1.54 6.21 -3.73 -0.02 1.52 16 11 C -0.12 -1.56 5.70 -27.00 -0.15 -1.72 16 12 C -0.11 -1.90 2.62 -89.52 -0.23 -2.14 16 13 H 0.08 1.37 8.13 -51.93 -0.42 0.94 16 14 C -0.14 -2.44 6.54 -25.15 -0.16 -2.61 16 15 C 0.18 4.17 5.45 -1.91 -0.01 4.16 16 16 N -0.59 -14.64 3.35 -162.90 -0.55 -15.19 16 17 C -0.23 -6.28 9.88 -15.06 -0.15 -6.42 16 18 H 0.08 2.14 7.41 -52.48 -0.39 1.75 16 19 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 20 N -0.92 -26.77 10.43 55.49 0.58 -26.19 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.16 3.15 2.77 -67.83 -0.19 2.96 16 26 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 27 C 0.12 2.23 5.67 -3.95 -0.02 2.21 16 28 N -0.41 -5.58 10.03 -5.88 -0.06 -5.63 16 29 C 0.07 0.75 6.79 -82.42 -0.56 0.19 16 30 C -0.10 -0.65 9.78 36.00 0.35 -0.29 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.29 5.94 -51.93 -0.31 -0.02 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.24 6.83 -51.93 -0.35 0.88 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.84 6.01 -51.93 -0.31 0.53 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 43 H 0.06 1.46 7.21 -51.93 -0.37 1.08 16 44 H 0.04 1.01 7.76 -51.93 -0.40 0.60 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.09 2.00 6.79 -51.93 -0.35 1.65 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.31 5.94 -51.93 -0.31 0.00 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -33.09 390.33 -9.61 -42.71 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.83 Total: -0.73 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -2.12 Total: 8.06 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.60 Total: -62.56 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.09 -9.61 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.256 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds