Wall clock time and date at job start Wed Apr 1 2020 04:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32135 * 119.90370 * 2 1 4 4 C 1.32086 * 120.07449 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.06738 * 180.02562 * 4 3 2 6 6 C 1.39442 * 119.87010 * 359.97438 * 4 3 2 7 7 C 1.48153 * 120.09937 * 179.97438 * 6 4 3 8 8 O 1.21516 * 119.99966 * 284.00906 * 7 6 4 9 9 N 1.34774 * 120.00116 * 103.99806 * 7 6 4 10 10 C 1.46595 * 119.75611 * 4.72733 * 9 7 6 11 11 C 1.53496 * 110.93338 * 227.68142 * 10 9 7 12 12 C 1.51975 * 107.37031 * 308.44007 * 11 10 9 13 13 H 1.09001 * 111.57092 * 303.00048 * 12 11 10 14 14 C 1.53697 * 114.99670 * 175.28937 * 12 11 10 15 15 C 1.55300 * 101.81500 * 206.55290 * 14 12 11 16 16 N 1.48160 * 107.04375 * 22.44335 * 15 14 12 17 17 C 1.36938 * 126.39590 * 185.02393 * 16 15 14 18 18 H 1.08006 * 119.99702 * 179.97438 * 17 16 15 19 19 C 1.38805 * 120.00217 * 359.97438 * 17 16 15 20 20 N 1.31616 * 120.00260 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00049 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47121 * 89.99535 * 21 19 17 23 23 H 1.48493 * 109.47030 * 209.99950 * 21 19 17 24 24 H 1.48502 * 109.46743 * 329.99939 * 21 19 17 25 25 C 1.45503 * 107.20181 * 5.00112 * 16 15 14 26 26 H 1.09004 * 109.56355 * 85.84083 * 25 16 15 27 27 C 1.47797 * 119.75725 * 184.99724 * 9 7 6 28 28 N 1.33000 * 119.80933 * 359.97438 * 6 4 3 29 29 C 1.31802 * 119.92758 * 0.02562 * 28 6 4 30 30 C 1.50693 * 119.94116 * 179.97438 * 29 28 6 31 31 H 1.09003 * 109.46977 * 90.00069 * 1 2 3 32 32 H 1.09004 * 109.47285 * 209.99801 * 1 2 3 33 33 H 1.08992 * 109.47046 * 330.00043 * 1 2 3 34 34 H 1.09004 * 109.47126 * 95.21872 * 5 4 3 35 35 H 1.08994 * 109.47049 * 215.22125 * 5 4 3 36 36 H 1.09001 * 109.46949 * 335.22081 * 5 4 3 37 37 H 1.09001 * 109.22530 * 348.08247 * 10 9 7 38 38 H 1.09001 * 109.22969 * 107.43934 * 10 9 7 39 39 H 1.09007 * 109.96543 * 188.90536 * 11 10 9 40 40 H 1.09004 * 109.80152 * 67.88619 * 11 10 9 41 41 H 1.08998 * 110.95951 * 88.42726 * 14 12 11 42 42 H 1.08993 * 110.99170 * 324.69364 * 14 12 11 43 43 H 1.09007 * 109.92086 * 263.09675 * 15 14 12 44 44 H 1.09000 * 110.08739 * 141.88723 * 15 14 12 45 45 H 0.97005 * 119.99990 * 179.97438 * 20 19 17 46 46 H 1.09006 * 110.06529 * 247.94147 * 27 9 7 47 47 H 1.08998 * 110.06476 * 9.50463 * 27 9 7 48 48 H 1.09002 * 109.47330 * 270.02124 * 30 29 28 49 49 H 1.08997 * 109.47031 * 30.01714 * 30 29 28 50 50 H 1.09000 * 109.47241 * 150.02436 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4866 1.1494 -0.0005 5 6 4.2377 2.4558 0.0001 6 6 4.1846 -0.0577 -0.0005 7 6 5.6662 -0.0592 -0.0017 8 8 6.2732 0.1944 -1.0233 9 7 6.3406 -0.3418 1.1304 10 6 5.6065 -0.7480 2.3326 11 6 6.0903 0.0346 3.5612 12 6 7.6038 -0.0925 3.6132 13 1 7.9175 -1.1359 3.6455 14 6 8.2866 0.7254 4.7209 15 6 9.6992 0.9585 4.1192 16 7 9.5754 0.8103 2.6502 17 6 10.5992 0.8408 1.7413 18 1 10.3903 0.7208 0.6884 19 6 11.9053 1.0259 2.1731 20 7 12.1598 1.1726 3.4560 21 14 13.3019 1.0682 0.9330 22 1 13.5174 2.4651 0.4776 23 1 14.5432 0.5574 1.5680 24 1 12.9550 0.2156 -0.2323 25 6 8.1629 0.6258 2.3539 26 1 7.6796 1.5983 2.2594 27 6 7.8145 -0.2339 1.1526 28 7 3.5166 -1.2078 0.0005 29 6 2.1986 -1.2027 0.0010 30 6 1.4414 -2.5056 0.0016 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 4.5002 2.7235 1.0236 35 1 5.1463 2.3527 -0.5930 36 1 3.6097 3.2361 -0.4299 37 1 4.5431 -0.5605 2.1842 38 1 5.7618 -1.8130 2.5052 39 1 5.6515 -0.3854 4.4664 40 1 5.8091 1.0833 3.4652 41 1 8.3468 0.1536 5.6469 42 1 7.7705 1.6718 4.8820 43 1 10.3963 0.2171 4.5098 44 1 10.0491 1.9616 4.3630 45 1 13.0727 1.3016 3.7577 46 1 8.2603 -1.2229 1.2585 47 1 8.1684 0.2411 0.2376 48 1 1.2588 -2.8202 -1.0259 49 1 2.0284 -3.2667 0.5156 50 1 0.4894 -2.3723 0.5154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042144114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:48 Heat of formation + Delta-G solvation = 19.576682 kcal Electronic energy + Delta-G solvation = -31346.970496 eV Core-core repulsion = 27374.002765 eV Total energy + Delta-G solvation = -3972.967731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.73282 -41.32194 -39.74957 -37.01224 -36.12287 -35.48574 -34.68950 -32.97843 -31.37471 -31.29417 -30.31038 -29.64394 -27.42361 -26.57065 -25.48499 -24.40126 -23.65388 -23.17512 -21.83553 -21.49222 -20.54676 -19.38814 -18.79610 -18.32439 -17.53130 -16.90651 -16.45382 -16.34065 -16.18283 -15.84557 -15.73839 -15.45037 -14.98808 -14.68327 -14.56704 -14.46496 -14.11011 -14.02756 -13.90027 -13.83907 -13.65367 -13.62478 -13.37140 -13.21188 -13.17514 -13.05095 -12.78561 -12.76336 -12.58577 -12.47883 -12.18988 -12.02948 -11.94996 -11.78216 -11.57947 -11.53977 -11.36052 -11.08171 -10.73576 -10.23096 -9.94499 -9.89606 -8.92138 -7.87288 -5.22134 -0.59140 -0.09636 1.15984 1.43631 1.44458 1.53083 1.57819 2.33738 2.47927 2.76448 2.90331 3.21762 3.30994 3.33693 3.44549 3.68316 3.78601 3.85262 3.89902 3.94584 4.08982 4.20126 4.21260 4.25690 4.42754 4.46797 4.48481 4.56708 4.62224 4.62929 4.72115 4.74323 4.76739 4.81225 4.83997 4.86829 4.99713 5.02961 5.05328 5.10184 5.10503 5.16997 5.28236 5.45631 5.47164 5.53833 5.66093 5.77722 6.05154 6.12347 6.18104 6.56876 6.76917 7.07259 7.75117 8.41708 9.23609 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.002913 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.217441 B = 9610.559451 C =10154.369904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.102 3.898 3 N -0.447 5.447 4 C 0.109 3.891 5 C -0.108 4.108 6 C 0.025 3.975 7 C 0.580 3.420 8 O -0.568 6.568 9 N -0.585 5.585 10 C 0.115 3.885 11 C -0.107 4.107 12 C -0.097 4.097 13 H 0.077 0.923 14 C -0.120 4.120 15 C 0.181 3.819 16 N -0.611 5.611 17 C -0.237 4.237 18 H 0.076 0.924 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.970 3.030 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.273 1.273 25 C 0.149 3.851 26 H 0.016 0.984 27 C 0.130 3.870 28 N -0.428 5.428 29 C 0.072 3.928 30 C -0.100 4.100 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.023 0.977 44 H 0.002 0.998 45 H 0.247 0.753 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.054 -5.812 -0.336 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.041 4.041 3 N -0.163 5.163 4 C -0.029 4.029 5 C -0.166 4.166 6 C -0.115 4.115 7 C 0.366 3.634 8 O -0.447 6.447 9 N -0.317 5.317 10 C -0.007 4.007 11 C -0.146 4.146 12 C -0.117 4.117 13 H 0.095 0.905 14 C -0.158 4.158 15 C 0.056 3.944 16 N -0.337 5.337 17 C -0.366 4.366 18 H 0.094 0.906 19 C -0.253 4.253 20 N -0.596 5.596 21 Si 0.798 3.202 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.198 1.198 25 C 0.041 3.959 26 H 0.033 0.967 27 C 0.007 3.993 28 N -0.144 5.144 29 C -0.072 4.072 30 C -0.157 4.157 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.098 0.902 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -28.415 -5.638 -0.860 28.981 hybrid contribution 1.951 0.382 -0.849 2.162 sum -26.464 -5.256 -1.709 27.035 Atomic orbital electron populations 1.21027 0.83889 1.05940 1.05173 1.23165 1.00620 0.88027 0.92337 1.68332 1.06786 1.30100 1.11099 1.22200 0.90694 0.95775 0.94254 1.20814 0.99270 0.92200 1.04303 1.21438 0.94232 0.91493 1.04326 1.18105 0.86039 0.75950 0.83356 1.90782 1.69581 1.50999 1.33321 1.48207 1.06823 1.65211 1.11423 1.21788 0.95317 1.00026 0.83525 1.21722 0.93657 1.01170 0.98006 1.22200 0.95291 0.99262 0.94934 0.90481 1.22589 0.95240 1.00035 0.97935 1.21374 0.93571 0.97388 0.82055 1.44416 1.01205 1.84615 1.03418 1.19308 0.86347 1.41942 0.88982 0.90628 1.25526 0.99432 1.02501 0.97881 1.70140 1.18770 1.56964 1.13761 0.85205 0.79003 0.77623 0.78321 1.21478 1.21677 1.19777 1.21110 0.85406 0.95079 0.94262 0.96701 1.21433 0.77851 1.00339 0.99691 1.68279 1.09994 1.27619 1.08539 1.22911 0.89103 0.99005 0.96189 1.20965 1.00050 0.89785 1.04918 0.88056 0.86507 0.89659 0.88611 0.91605 0.88067 0.90039 0.89838 0.86803 0.91205 0.89492 0.90961 0.95885 0.97953 0.94332 0.91177 0.91753 0.88592 0.90167 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 9.78 71.23 0.70 0.00 16 2 C 0.10 1.73 6.79 42.63 0.29 2.02 16 3 N -0.45 -10.19 10.34 -170.47 -1.76 -11.96 16 4 C 0.11 2.89 6.82 42.81 0.29 3.19 16 5 C -0.11 -2.66 9.69 71.24 0.69 -1.97 16 6 C 0.03 0.75 4.54 41.89 0.19 0.94 16 7 C 0.58 20.57 6.13 86.88 0.53 21.11 16 8 O -0.57 -24.67 15.88 -3.77 -0.06 -24.73 16 9 N -0.59 -19.24 3.01 -822.65 -2.48 -21.72 16 10 C 0.12 2.82 6.21 86.53 0.54 3.36 16 11 C -0.11 -2.47 5.70 30.42 0.17 -2.30 16 12 C -0.10 -3.10 2.62 -10.08 -0.03 -3.13 16 13 H 0.08 2.53 8.13 -2.39 -0.02 2.51 16 14 C -0.12 -4.10 6.54 31.62 0.21 -3.89 16 15 C 0.18 8.81 5.45 86.85 0.47 9.28 16 16 N -0.61 -31.55 3.35 -669.30 -2.24 -33.79 16 17 C -0.24 -13.55 9.88 84.03 0.83 -12.72 16 18 H 0.08 4.27 7.41 -2.91 -0.02 4.25 16 19 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 20 N -0.95 -57.43 10.43 21.65 0.23 -57.20 16 21 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 25 C 0.15 6.15 2.77 45.59 0.13 6.28 16 26 H 0.02 0.67 7.90 -2.39 -0.02 0.65 16 27 C 0.13 5.15 5.67 85.73 0.49 5.63 16 28 N -0.43 -11.10 10.03 -172.53 -1.73 -12.83 16 29 C 0.07 1.31 6.79 42.68 0.29 1.60 16 30 C -0.10 -0.84 9.78 71.23 0.70 -0.15 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.07 5.94 -2.38 -0.01 0.05 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.07 1.93 6.83 -2.39 -0.02 1.92 16 36 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 1.84 6.01 -2.39 -0.01 1.83 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.07 1.63 7.97 -2.38 -0.02 1.61 16 41 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 43 H 0.02 1.25 7.21 -2.38 -0.02 1.23 16 44 H 0.00 0.12 7.76 -2.39 -0.02 0.10 16 45 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 46 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 47 H 0.06 2.92 6.79 -2.39 -0.02 2.91 16 48 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.12 0.16 5.94 -2.39 -0.01 0.15 16 Total: -1.00 -78.33 390.33 1.88 -76.45 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.95 Total: 10.26 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 6.95 Total: 26.22 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -7.99 Total: -137.51 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.06 Total: -24.73 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -78.33 1.88 -76.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.028 kcal (2) G-P(sol) polarization free energy of solvation -78.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds