Wall clock time and date at job start Wed Apr 1 2020 04:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32140 * 119.89963 * 2 1 4 4 C 1.32082 * 120.06851 * 179.75432 * 3 2 1 5 5 C 1.50702 * 120.06158 * 180.25139 * 4 3 2 6 6 C 1.39439 * 119.87204 * 0.51882 * 4 3 2 7 7 C 1.48158 * 120.09655 * 179.75529 * 6 4 3 8 8 O 1.21513 * 120.00206 * 284.38067 * 7 6 4 9 9 N 1.34772 * 119.99968 * 104.37864 * 7 6 4 10 10 C 1.46586 * 119.75299 * 174.92741 * 9 7 6 11 11 C 1.53887 * 110.71457 * 131.98457 * 10 9 7 12 12 C 1.51979 * 107.28932 * 51.80625 * 11 10 9 13 13 H 1.08991 * 111.01703 * 57.33281 * 12 11 10 14 14 C 1.53703 * 115.00598 * 184.55615 * 12 11 10 15 15 C 1.55293 * 101.81603 * 153.45794 * 14 12 11 16 16 N 1.48152 * 107.04388 * 337.55782 * 15 14 12 17 17 C 1.36943 * 126.40077 * 174.99803 * 16 15 14 18 18 H 1.07996 * 120.00642 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99431 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99823 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47121 * 60.00077 * 21 19 17 23 23 H 1.48505 * 109.47371 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47314 * 299.99968 * 21 19 17 25 25 C 1.45509 * 107.20514 * 354.99458 * 16 15 14 26 26 H 1.09000 * 109.57124 * 273.37261 * 25 16 15 27 27 C 1.47805 * 119.75072 * 354.64830 * 9 7 6 28 28 N 1.33005 * 119.80637 * 359.48093 * 6 4 3 29 29 C 1.31794 * 119.92458 * 0.25346 * 28 6 4 30 30 C 1.50700 * 119.93618 * 179.97438 * 29 28 6 31 31 H 1.09002 * 109.46905 * 269.97944 * 1 2 3 32 32 H 1.09001 * 109.46807 * 29.97905 * 1 2 3 33 33 H 1.08993 * 109.46787 * 149.98166 * 1 2 3 34 34 H 1.08999 * 109.47354 * 275.09591 * 5 4 3 35 35 H 1.09002 * 109.47014 * 35.09667 * 5 4 3 36 36 H 1.09001 * 109.46967 * 155.09503 * 5 4 3 37 37 H 1.09004 * 109.22755 * 252.30027 * 10 9 7 38 38 H 1.08998 * 109.23136 * 11.66543 * 10 9 7 39 39 H 1.09001 * 109.89592 * 171.25696 * 11 10 9 40 40 H 1.09003 * 109.88926 * 292.28539 * 11 10 9 41 41 H 1.08999 * 110.95763 * 271.59042 * 14 12 11 42 42 H 1.09002 * 110.95972 * 35.28938 * 14 12 11 43 43 H 1.09002 * 109.91392 * 96.90208 * 15 14 12 44 44 H 1.08999 * 109.92259 * 218.00125 * 15 14 12 45 45 H 0.97006 * 119.99810 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.06408 * 350.75545 * 27 9 7 47 47 H 1.09005 * 110.05938 * 112.31173 * 27 9 7 48 48 H 1.09002 * 109.47013 * 89.99467 * 30 29 28 49 49 H 1.08992 * 109.47359 * 210.00238 * 30 29 28 50 50 H 1.09006 * 109.46727 * 330.00344 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4866 1.1494 0.0049 5 6 4.2376 2.4559 0.0106 6 6 4.1847 -0.0576 -0.0009 7 6 5.6662 -0.0590 -0.0009 8 8 6.2741 0.2066 -1.0190 9 7 6.3398 -0.3549 1.1283 10 6 7.8012 -0.4642 1.0961 11 6 8.4324 0.3357 2.2493 12 6 7.7463 -0.1035 3.5323 13 1 7.8446 -1.1789 3.6798 14 6 8.1686 0.6689 4.7922 15 6 6.9087 0.5276 5.6891 16 7 5.7652 0.2460 4.7903 17 6 4.4826 -0.0433 5.1732 18 1 3.7258 -0.2330 4.4265 19 6 4.1553 -0.0928 6.5213 20 7 5.0775 0.1389 7.4314 21 14 2.4057 -0.4867 7.0437 22 1 2.0269 -1.8288 6.5330 23 1 2.3180 -0.4789 8.5261 24 1 1.4813 0.5336 6.4873 25 6 6.2593 0.3343 3.4245 26 1 6.2075 1.3684 3.0836 27 6 5.5999 -0.5607 2.3912 28 7 3.5166 -1.2077 -0.0008 29 6 2.1987 -1.2025 -0.0004 30 6 1.4415 -2.5055 -0.0010 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3632 -0.8898 -0.5141 34 1 4.3434 2.8188 -1.0118 35 1 3.6875 3.1886 0.6011 36 1 5.2252 2.3054 0.4467 37 1 8.0850 -1.5125 1.1891 38 1 8.1695 -0.0762 0.1464 39 1 9.4998 0.1228 2.3079 40 1 8.2756 1.4026 2.0900 41 1 9.0357 0.2046 5.2619 42 1 8.3671 1.7152 4.5599 43 1 7.0423 -0.2969 6.3896 44 1 6.7360 1.4547 6.2357 45 1 4.8488 0.1039 8.3734 46 1 4.5552 -0.2773 2.2629 47 1 5.6703 -1.6037 2.7001 48 1 1.2593 -2.8203 1.0266 49 1 0.4894 -2.3722 -0.5144 50 1 2.0284 -3.2665 -0.5154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042144117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:52 Heat of formation + Delta-G solvation = 39.921122 kcal Electronic energy + Delta-G solvation = -31985.174208 eV Core-core repulsion = 28013.088678 eV Total energy + Delta-G solvation = -3972.085530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.58261 -39.97397 -38.29202 -35.31037 -35.04011 -34.51159 -33.04248 -31.45285 -30.42394 -29.53266 -28.96332 -28.45919 -26.41318 -24.75304 -24.04456 -23.43287 -22.51014 -21.73017 -20.25585 -19.93169 -19.22438 -18.25519 -17.25997 -16.83771 -16.11104 -15.43558 -15.30283 -14.96047 -14.80337 -14.43718 -14.24513 -13.93755 -13.70317 -13.54925 -13.38095 -13.21423 -13.16628 -13.10485 -12.76531 -12.65758 -12.37130 -12.31880 -12.09405 -11.99321 -11.86790 -11.64884 -11.60135 -11.35187 -10.95037 -10.88410 -10.86464 -10.74824 -10.38194 -10.19621 -10.01863 -9.88014 -9.74251 -9.57565 -9.12259 -8.87093 -8.69909 -8.52781 -6.93405 -5.79434 -3.13695 0.52164 1.01942 2.43707 2.89450 3.33939 3.38560 3.39788 3.46097 3.81570 3.98789 4.27042 4.36827 4.45555 4.77659 4.82072 4.91243 5.04317 5.11731 5.13625 5.21929 5.33491 5.34350 5.46285 5.51775 5.54048 5.54092 5.55592 5.62398 5.67204 5.71599 5.74026 5.81800 5.82727 5.95311 5.97784 6.03487 6.06408 6.19397 6.20146 6.29000 6.41149 6.53588 6.57789 6.70506 6.96653 7.15485 7.34912 7.47784 7.54591 7.65824 7.73860 8.07225 8.16207 9.10631 9.73692 10.40919 11.32527 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.005289 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.102513 B = 5292.320541 C = 7665.501080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.097 3.903 3 N -0.434 5.434 4 C 0.119 3.881 5 C -0.102 4.102 6 C 0.047 3.953 7 C 0.586 3.414 8 O -0.534 6.534 9 N -0.589 5.589 10 C 0.112 3.888 11 C -0.119 4.119 12 C -0.112 4.112 13 H 0.078 0.922 14 C -0.138 4.138 15 C 0.178 3.822 16 N -0.591 5.591 17 C -0.231 4.231 18 H 0.073 0.927 19 C -0.002 4.002 20 N -0.918 5.918 21 Si 0.907 3.093 22 H -0.284 1.284 23 H -0.288 1.288 24 H -0.285 1.285 25 C 0.156 3.844 26 H 0.025 0.975 27 C 0.118 3.882 28 N -0.405 5.405 29 C 0.074 3.926 30 C -0.102 4.102 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.038 0.962 45 H 0.254 0.746 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -1.226 -13.714 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.045 4.045 3 N -0.149 5.149 4 C -0.022 4.022 5 C -0.160 4.160 6 C -0.095 4.095 7 C 0.371 3.629 8 O -0.411 6.411 9 N -0.321 5.321 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.131 4.131 13 H 0.097 0.903 14 C -0.176 4.176 15 C 0.054 3.946 16 N -0.316 5.316 17 C -0.359 4.359 18 H 0.091 0.909 19 C -0.199 4.199 20 N -0.565 5.565 21 Si 0.737 3.263 22 H -0.211 1.211 23 H -0.214 1.214 24 H -0.211 1.211 25 C 0.047 3.953 26 H 0.042 0.958 27 C -0.005 4.005 28 N -0.121 5.121 29 C -0.069 4.069 30 C -0.159 4.159 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.730 -1.106 -14.003 14.153 hybrid contribution -0.995 -0.265 0.531 1.158 sum -2.725 -1.371 -13.472 13.813 Atomic orbital electron populations 1.20821 0.87463 1.03984 1.03974 1.22321 0.98517 0.88824 0.94817 1.68185 1.07585 1.28912 1.10263 1.22140 0.90155 0.95983 0.93884 1.20744 0.99247 0.92156 1.03842 1.21770 0.95678 0.90462 1.01597 1.17650 0.85059 0.76570 0.83666 1.90764 1.68467 1.49337 1.32517 1.48179 1.07393 1.67740 1.08808 1.21658 0.78332 1.00531 1.00426 1.21821 0.99519 1.00225 0.94199 1.22270 0.96847 1.00214 0.93802 0.90347 1.22730 0.99550 0.98862 0.96476 1.21540 0.82247 1.00344 0.90515 1.44142 1.06482 1.82528 0.98421 1.18867 0.84344 1.41473 0.91220 0.90888 1.24761 0.97771 1.01692 0.95683 1.69927 1.31557 1.54947 1.00051 0.86275 0.84130 0.78246 0.77608 1.21091 1.21417 1.21134 1.20982 0.91718 0.95574 0.87061 0.95785 1.21845 0.95262 1.01212 0.82221 1.68230 1.08343 1.27957 1.07556 1.22107 0.90004 0.96961 0.97790 1.20776 0.99068 0.92146 1.03940 0.89380 0.90039 0.89753 0.89418 0.89378 0.90377 0.91462 0.89086 0.90610 0.91337 0.92117 0.92470 0.92606 0.94348 0.93578 0.90948 0.90482 0.89496 0.89871 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.78 36.01 0.35 -0.59 16 2 C 0.10 1.30 6.79 -82.28 -0.56 0.74 16 3 N -0.43 -6.70 10.34 -5.23 -0.05 -6.75 16 4 C 0.12 1.91 6.82 -82.04 -0.56 1.35 16 5 C -0.10 -1.40 9.89 36.01 0.36 -1.04 16 6 C 0.05 0.81 4.42 -82.84 -0.37 0.44 16 7 C 0.59 10.21 5.70 -12.19 -0.07 10.14 16 8 O -0.53 -10.09 16.44 5.35 0.09 -10.00 16 9 N -0.59 -9.70 3.01 -173.73 -0.52 -10.22 16 10 C 0.11 1.58 6.35 -3.53 -0.02 1.56 16 11 C -0.12 -1.61 5.72 -26.79 -0.15 -1.76 16 12 C -0.11 -1.87 2.61 -89.51 -0.23 -2.11 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 14 C -0.14 -2.45 6.54 -25.15 -0.16 -2.61 16 15 C 0.18 4.14 5.45 -1.92 -0.01 4.13 16 16 N -0.59 -14.38 3.35 -162.91 -0.55 -14.93 16 17 C -0.23 -6.19 9.88 -15.06 -0.15 -6.34 16 18 H 0.07 1.92 7.41 -52.49 -0.39 1.53 16 19 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 20 N -0.92 -26.22 10.44 55.49 0.58 -25.64 16 21 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.16 3.10 2.76 -67.82 -0.19 2.91 16 26 H 0.02 0.52 7.93 -51.93 -0.41 0.10 16 27 C 0.12 2.16 5.56 -3.94 -0.02 2.14 16 28 N -0.40 -6.68 10.36 -5.88 -0.06 -6.74 16 29 C 0.07 1.02 6.79 -82.43 -0.56 0.46 16 30 C -0.10 -0.97 9.78 36.01 0.35 -0.62 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.53 5.94 -51.93 -0.31 0.22 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.11 6.90 -51.93 -0.36 0.76 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.26 6.92 -51.93 -0.36 0.90 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.95 7.99 -51.93 -0.41 0.53 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 43 H 0.06 1.44 7.21 -51.93 -0.37 1.07 16 44 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.07 1.43 6.13 -51.93 -0.32 1.12 16 47 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.55 5.94 -51.93 -0.31 0.24 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -32.28 391.28 -9.59 -41.86 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.85 Total: 1.28 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -2.09 Total: 8.65 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.60 Total: -64.28 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.28 -9.59 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.785 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds