Wall clock time and date at job start Wed Apr 1 2020 04:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32140 * 119.89963 * 2 1 4 4 C 1.32082 * 120.06851 * 179.75432 * 3 2 1 5 5 C 1.50702 * 120.06158 * 180.25139 * 4 3 2 6 6 C 1.39439 * 119.87204 * 0.51882 * 4 3 2 7 7 C 1.48158 * 120.09655 * 179.75529 * 6 4 3 8 8 O 1.21513 * 120.00206 * 284.38067 * 7 6 4 9 9 N 1.34772 * 119.99968 * 104.37864 * 7 6 4 10 10 C 1.46586 * 119.75299 * 174.92741 * 9 7 6 11 11 C 1.53887 * 110.71457 * 131.98457 * 10 9 7 12 12 C 1.51979 * 107.28932 * 51.80625 * 11 10 9 13 13 H 1.08991 * 111.01703 * 57.33281 * 12 11 10 14 14 C 1.53703 * 115.00598 * 184.55615 * 12 11 10 15 15 C 1.55293 * 101.81603 * 153.45794 * 14 12 11 16 16 N 1.48152 * 107.04388 * 337.55782 * 15 14 12 17 17 C 1.36943 * 126.40077 * 174.99803 * 16 15 14 18 18 H 1.07996 * 120.00642 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99431 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99823 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47121 * 60.00077 * 21 19 17 23 23 H 1.48505 * 109.47371 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47314 * 299.99968 * 21 19 17 25 25 C 1.45509 * 107.20514 * 354.99458 * 16 15 14 26 26 H 1.09000 * 109.57124 * 273.37261 * 25 16 15 27 27 C 1.47805 * 119.75072 * 354.64830 * 9 7 6 28 28 N 1.33005 * 119.80637 * 359.48093 * 6 4 3 29 29 C 1.31794 * 119.92458 * 0.25346 * 28 6 4 30 30 C 1.50700 * 119.93618 * 179.97438 * 29 28 6 31 31 H 1.09002 * 109.46905 * 269.97944 * 1 2 3 32 32 H 1.09001 * 109.46807 * 29.97905 * 1 2 3 33 33 H 1.08993 * 109.46787 * 149.98166 * 1 2 3 34 34 H 1.08999 * 109.47354 * 275.09591 * 5 4 3 35 35 H 1.09002 * 109.47014 * 35.09667 * 5 4 3 36 36 H 1.09001 * 109.46967 * 155.09503 * 5 4 3 37 37 H 1.09004 * 109.22755 * 252.30027 * 10 9 7 38 38 H 1.08998 * 109.23136 * 11.66543 * 10 9 7 39 39 H 1.09001 * 109.89592 * 171.25696 * 11 10 9 40 40 H 1.09003 * 109.88926 * 292.28539 * 11 10 9 41 41 H 1.08999 * 110.95763 * 271.59042 * 14 12 11 42 42 H 1.09002 * 110.95972 * 35.28938 * 14 12 11 43 43 H 1.09002 * 109.91392 * 96.90208 * 15 14 12 44 44 H 1.08999 * 109.92259 * 218.00125 * 15 14 12 45 45 H 0.97006 * 119.99810 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.06408 * 350.75545 * 27 9 7 47 47 H 1.09005 * 110.05938 * 112.31173 * 27 9 7 48 48 H 1.09002 * 109.47013 * 89.99467 * 30 29 28 49 49 H 1.08992 * 109.47359 * 210.00238 * 30 29 28 50 50 H 1.09006 * 109.46727 * 330.00344 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4866 1.1494 0.0049 5 6 4.2376 2.4559 0.0106 6 6 4.1847 -0.0576 -0.0009 7 6 5.6662 -0.0590 -0.0009 8 8 6.2741 0.2066 -1.0190 9 7 6.3398 -0.3549 1.1283 10 6 7.8012 -0.4642 1.0961 11 6 8.4324 0.3357 2.2493 12 6 7.7463 -0.1035 3.5323 13 1 7.8446 -1.1789 3.6798 14 6 8.1686 0.6689 4.7922 15 6 6.9087 0.5276 5.6891 16 7 5.7652 0.2460 4.7903 17 6 4.4826 -0.0433 5.1732 18 1 3.7258 -0.2330 4.4265 19 6 4.1553 -0.0928 6.5213 20 7 5.0775 0.1389 7.4314 21 14 2.4057 -0.4867 7.0437 22 1 2.0269 -1.8288 6.5330 23 1 2.3180 -0.4789 8.5261 24 1 1.4813 0.5336 6.4873 25 6 6.2593 0.3343 3.4245 26 1 6.2075 1.3684 3.0836 27 6 5.5999 -0.5607 2.3912 28 7 3.5166 -1.2077 -0.0008 29 6 2.1987 -1.2025 -0.0004 30 6 1.4415 -2.5055 -0.0010 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3632 -0.8898 -0.5141 34 1 4.3434 2.8188 -1.0118 35 1 3.6875 3.1886 0.6011 36 1 5.2252 2.3054 0.4467 37 1 8.0850 -1.5125 1.1891 38 1 8.1695 -0.0762 0.1464 39 1 9.4998 0.1228 2.3079 40 1 8.2756 1.4026 2.0900 41 1 9.0357 0.2046 5.2619 42 1 8.3671 1.7152 4.5599 43 1 7.0423 -0.2969 6.3896 44 1 6.7360 1.4547 6.2357 45 1 4.8488 0.1039 8.3734 46 1 4.5552 -0.2773 2.2629 47 1 5.6703 -1.6037 2.7001 48 1 1.2593 -2.8203 1.0266 49 1 0.4894 -2.3722 -0.5144 50 1 2.0284 -3.2665 -0.5154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042144117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:51 Heat of formation + Delta-G solvation = 19.198523 kcal Electronic energy + Delta-G solvation = -31986.072807 eV Core-core repulsion = 28013.088678 eV Total energy + Delta-G solvation = -3972.984129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.72877 -41.31809 -39.78046 -36.83755 -36.14015 -35.59316 -34.71405 -33.08900 -31.41502 -31.01670 -30.34404 -29.74895 -27.53940 -26.48117 -25.48841 -24.59910 -23.77754 -22.91152 -21.83545 -21.52380 -20.54093 -19.39649 -18.69516 -18.54855 -17.49628 -16.89422 -16.49532 -16.33495 -16.25206 -15.81239 -15.75095 -15.43157 -14.95290 -14.75568 -14.62930 -14.53128 -14.12978 -13.98737 -13.90262 -13.81660 -13.69793 -13.57477 -13.43644 -13.21246 -13.15705 -13.11975 -12.82372 -12.74735 -12.55996 -12.53678 -12.16393 -12.07288 -11.92698 -11.88786 -11.60213 -11.52879 -11.35143 -11.08108 -10.74099 -10.26555 -9.96506 -9.86709 -8.93760 -7.88045 -5.23488 -0.59722 -0.10849 1.12347 1.41618 1.44020 1.50326 1.61960 2.35360 2.45433 2.71512 2.88214 3.21680 3.27317 3.30704 3.42819 3.72465 3.78686 3.86196 3.89615 3.97358 4.06238 4.14628 4.19052 4.29749 4.39971 4.43423 4.47788 4.55671 4.57073 4.60548 4.66121 4.71922 4.78981 4.80226 4.83729 4.88126 4.93773 5.00260 5.03298 5.07291 5.10903 5.12955 5.33049 5.40908 5.43353 5.51622 5.65541 5.77048 5.97185 6.07735 6.16160 6.54530 6.74909 7.04788 7.73096 8.40841 9.22566 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.005289 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.102513 B = 5292.320541 C = 7665.501080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.096 3.904 3 N -0.452 5.452 4 C 0.102 3.898 5 C -0.098 4.098 6 C 0.018 3.982 7 C 0.588 3.412 8 O -0.553 6.553 9 N -0.586 5.586 10 C 0.107 3.893 11 C -0.106 4.106 12 C -0.098 4.098 13 H 0.077 0.923 14 C -0.122 4.122 15 C 0.182 3.818 16 N -0.609 5.609 17 C -0.236 4.236 18 H 0.072 0.928 19 C -0.058 4.058 20 N -0.946 5.946 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.149 3.851 26 H 0.015 0.985 27 C 0.137 3.863 28 N -0.429 5.429 29 C 0.066 3.934 30 C -0.099 4.099 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.023 0.977 44 H 0.002 0.998 45 H 0.248 0.752 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -2.008 -15.191 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.047 4.047 3 N -0.167 5.167 4 C -0.038 4.038 5 C -0.155 4.155 6 C -0.122 4.122 7 C 0.374 3.626 8 O -0.431 6.431 9 N -0.318 5.318 10 C -0.014 4.014 11 C -0.144 4.144 12 C -0.117 4.117 13 H 0.096 0.904 14 C -0.160 4.160 15 C 0.057 3.943 16 N -0.335 5.335 17 C -0.365 4.365 18 H 0.090 0.910 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.040 3.960 26 H 0.033 0.967 27 C 0.014 3.986 28 N -0.145 5.145 29 C -0.077 4.077 30 C -0.156 4.156 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.042 0.958 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.137 0.863 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.229 -1.877 -15.516 15.788 hybrid contribution -0.924 -0.035 0.956 1.330 sum -3.153 -1.912 -14.561 15.020 Atomic orbital electron populations 1.21011 0.84095 1.05924 1.04969 1.23127 1.00646 0.88195 0.92749 1.68265 1.07308 1.30065 1.11092 1.22404 0.90774 0.96379 0.94199 1.20740 0.98502 0.91611 1.04685 1.21758 0.95565 0.91208 1.03706 1.17759 0.85439 0.75985 0.83455 1.90735 1.69056 1.50329 1.33009 1.48188 1.08396 1.67433 1.07767 1.21898 0.76690 1.01755 1.01017 1.21777 1.01155 0.99995 0.91506 1.22199 0.94446 1.00029 0.95049 0.90443 1.22603 0.97408 1.00280 0.95670 1.21347 0.84686 0.97170 0.91075 1.44376 1.06170 1.82317 1.00598 1.19142 0.85675 1.40368 0.91335 0.91012 1.25531 1.01372 1.02430 0.95850 1.70136 1.33144 1.56373 0.99793 0.85327 0.79995 0.78373 0.76784 1.20035 1.21782 1.20653 1.21110 0.94164 0.95345 0.85333 0.96730 1.21441 0.94478 1.00070 0.82638 1.68224 1.09868 1.27986 1.08448 1.22873 0.89420 0.98972 0.96479 1.20945 1.00044 0.89887 1.04766 0.88533 0.89479 0.86480 0.88069 0.88807 0.91395 0.89876 0.88411 0.86896 0.91356 0.89587 0.91062 0.95848 0.97965 0.94295 0.92773 0.91304 0.88899 0.86335 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 9.78 71.24 0.70 -0.85 16 2 C 0.10 2.44 6.79 42.63 0.29 2.73 16 3 N -0.45 -13.79 10.34 -170.47 -1.76 -15.55 16 4 C 0.10 3.30 6.82 42.81 0.29 3.59 16 5 C -0.10 -2.72 9.89 71.24 0.70 -2.01 16 6 C 0.02 0.64 4.42 41.89 0.19 0.82 16 7 C 0.59 20.56 5.70 86.88 0.50 21.05 16 8 O -0.55 -20.82 16.44 -3.76 -0.06 -20.88 16 9 N -0.59 -19.04 3.01 -821.87 -2.47 -21.51 16 10 C 0.11 2.78 6.35 86.66 0.55 3.33 16 11 C -0.11 -2.55 5.72 30.56 0.17 -2.37 16 12 C -0.10 -3.11 2.61 -10.08 -0.03 -3.14 16 13 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.12 -4.15 6.54 31.62 0.21 -3.95 16 15 C 0.18 8.71 5.45 86.85 0.47 9.19 16 16 N -0.61 -30.43 3.35 -669.32 -2.24 -32.67 16 17 C -0.24 -12.98 9.88 84.03 0.83 -12.15 16 18 H 0.07 3.86 7.41 -2.91 -0.02 3.83 16 19 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 20 N -0.95 -55.95 10.44 21.65 0.23 -55.73 16 21 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 C 0.15 5.93 2.76 45.59 0.13 6.05 16 26 H 0.02 0.64 7.93 -2.39 -0.02 0.62 16 27 C 0.14 5.11 5.56 85.73 0.48 5.59 16 28 N -0.43 -14.14 10.36 -172.53 -1.79 -15.93 16 29 C 0.07 1.76 6.79 42.68 0.29 2.04 16 30 C -0.10 -1.64 9.78 71.24 0.70 -0.95 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 0.96 5.94 -2.39 -0.01 0.95 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.07 1.99 6.90 -2.39 -0.02 1.97 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.10 2.49 6.92 -2.39 -0.02 2.47 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 1.70 7.99 -2.39 -0.02 1.68 16 41 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 43 H 0.02 1.25 7.21 -2.39 -0.02 1.23 16 44 H 0.00 0.11 7.77 -2.39 -0.02 0.09 16 45 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 46 H 0.05 2.21 6.13 -2.39 -0.01 2.20 16 47 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 48 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.12 1.07 5.94 -2.39 -0.01 1.06 16 50 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -73.64 391.28 1.80 -71.84 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.95 Total: 17.16 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 6.93 Total: 26.18 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -8.04 Total: -141.38 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.64 1.80 -71.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.039 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds