Wall clock time and date at job start Wed Apr 1 2020 04:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38773 * 119.90368 * 2 1 4 4 N 1.31775 * 120.12586 * 179.72039 * 3 2 1 5 5 C 1.33031 * 119.92264 * 0.50988 * 4 3 2 6 6 C 1.48150 * 120.09694 * 179.76591 * 5 4 3 7 7 O 1.21515 * 120.00114 * 186.99435 * 6 5 4 8 8 N 1.34954 * 119.99854 * 6.99619 * 6 5 4 9 9 C 1.43523 * 120.29988 * 358.62535 * 8 6 5 10 10 C 1.54724 * 116.06057 * 270.44267 * 9 8 6 11 11 C 1.54535 * 111.37374 * 302.33793 * 10 9 8 12 12 C 1.48757 * 112.94633 * 340.79638 * 11 10 9 13 13 C 1.51697 * 110.28923 * 85.72262 * 12 11 10 14 14 C 1.55080 * 111.51986 * 38.76574 * 13 12 11 15 15 C 1.54499 * 102.03244 * 70.12708 * 14 13 12 16 16 N 1.47254 * 106.15894 * 29.65441 * 15 14 13 17 17 C 1.36872 * 125.66242 * 176.42723 * 16 15 14 18 18 H 1.08000 * 120.00472 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99805 * 0.02562 * 17 16 15 20 20 N 1.31628 * 120.00013 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00318 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47280 * 90.00038 * 21 19 17 23 23 H 1.48503 * 109.47111 * 210.00492 * 21 19 17 24 24 H 1.48505 * 109.46656 * 329.99788 * 21 19 17 25 25 C 1.47439 * 108.57263 * 356.16284 * 16 15 14 26 26 C 1.46199 * 115.80072 * 269.21333 * 13 12 11 27 27 C 1.39404 * 119.81201 * 359.49133 * 5 4 3 28 28 N 1.32105 * 119.90868 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47204 * 270.02109 * 1 2 3 30 30 H 1.08995 * 109.47116 * 30.02272 * 1 2 3 31 31 H 1.08998 * 109.46848 * 150.02331 * 1 2 3 32 32 H 1.08005 * 119.94054 * 359.97286 * 3 2 1 33 33 H 1.09300 * 107.63627 * 31.26680 * 9 8 6 34 34 H 1.08701 * 108.60937 * 147.54726 * 9 8 6 35 35 H 1.09182 * 109.42480 * 63.36562 * 10 9 8 36 36 H 1.09358 * 108.97818 * 181.90780 * 10 9 8 37 37 H 1.08200 * 110.29846 * 107.64945 * 11 10 9 38 38 H 1.10692 * 107.17500 * 222.42995 * 11 10 9 39 39 H 1.09623 * 110.48267 * 323.78141 * 12 11 10 40 40 H 1.10153 * 109.38006 * 206.04357 * 12 11 10 41 41 H 1.07757 * 113.65077 * 308.76954 * 14 13 12 42 42 H 1.09911 * 109.79618 * 186.09304 * 14 13 12 43 43 H 1.08799 * 110.01195 * 270.83485 * 15 14 13 44 44 H 1.08721 * 110.12117 * 148.76933 * 15 14 13 45 45 H 0.96999 * 119.99915 * 179.97438 * 20 19 17 46 46 H 1.08595 * 110.87817 * 94.78481 * 25 16 15 47 47 H 1.08780 * 110.53081 * 218.67694 * 25 16 15 48 48 H 1.09236 * 109.62610 * 175.82893 * 26 13 12 49 49 H 1.09236 * 109.63185 * 295.58545 * 26 13 12 50 50 H 1.07999 * 120.06138 * 180.22917 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5166 1.2081 0.0056 5 6 4.1846 0.0577 0.0009 6 6 5.6661 0.0590 0.0019 7 8 6.2747 -0.9844 -0.1304 8 7 6.3398 1.2190 0.1498 9 6 5.6278 2.4586 0.2772 10 6 5.3110 3.1993 -1.0438 11 6 6.5992 3.5068 -1.8401 12 6 7.8263 3.4534 -1.0009 13 6 8.3457 2.0305 -0.9185 14 6 8.2012 1.2927 -2.2749 15 6 9.2560 2.0108 -3.1461 16 7 10.3145 2.4560 -2.2243 17 6 11.4791 3.0770 -2.5868 18 1 12.1952 3.3652 -1.8315 19 6 11.7398 3.3364 -3.9253 20 7 10.8667 2.9855 -4.8459 21 14 13.3295 4.1832 -4.4203 22 1 14.3774 3.1615 -4.6709 23 1 13.1045 4.9751 -5.6563 24 1 13.7702 5.0866 -3.3272 25 6 9.9064 2.1265 -0.8463 26 6 7.8374 1.2311 0.1950 27 6 3.4868 -1.1491 0.0009 28 7 2.1657 -1.1451 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6563 2.1369 -0.0004 33 1 4.6792 2.2459 0.7766 34 1 6.1985 3.1218 0.9223 35 1 4.6462 2.5848 -1.6542 36 1 4.8008 4.1383 -0.8115 37 1 6.6643 2.8671 -2.7102 38 1 6.5042 4.5385 -2.2298 39 1 7.6204 3.8379 0.0048 40 1 8.6005 4.0998 -1.4439 41 1 7.2107 1.3508 -2.6953 42 1 8.4829 0.2370 -2.1563 43 1 8.8086 2.8715 -3.6387 44 1 9.6663 1.3219 -3.8804 45 1 11.0488 3.1671 -5.7811 46 1 10.3219 1.1720 -0.5374 47 1 10.1941 2.9222 -0.1627 48 1 8.2157 0.2093 0.1159 49 1 8.1720 1.6641 1.1404 50 1 4.0251 -2.0853 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045910796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:53 Heat of formation + Delta-G solvation = 70.484319 kcal Electronic energy + Delta-G solvation = -31732.692921 eV Core-core repulsion = 27761.932711 eV Total energy + Delta-G solvation = -3970.760210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74159 -40.25894 -38.51311 -36.21133 -34.91786 -33.34056 -33.20660 -32.80691 -30.47987 -28.99535 -28.58843 -27.17936 -25.80712 -24.93385 -24.72714 -23.93561 -23.07555 -21.15155 -20.00137 -19.53490 -18.34651 -18.22153 -17.06366 -16.61445 -16.53642 -15.96281 -15.79806 -15.39522 -15.04102 -14.86245 -14.59082 -14.18474 -13.93454 -13.77804 -13.59369 -13.15360 -13.10663 -13.00531 -12.81739 -12.41260 -12.28637 -12.07692 -11.97270 -11.86485 -11.58666 -11.29386 -11.04232 -10.89681 -10.78851 -10.61554 -10.43983 -10.17689 -10.11396 -9.96966 -9.79222 -9.69098 -9.58404 -9.57087 -9.48325 -9.11475 -8.55223 -8.44402 -6.76743 -5.65921 -2.98983 0.08244 0.68628 2.56463 2.83770 3.42492 3.46202 3.47365 3.49154 3.62363 3.72579 4.03226 4.36908 4.54147 4.60781 4.70875 5.01009 5.05678 5.10796 5.13104 5.18340 5.22107 5.29818 5.34140 5.46956 5.48543 5.58156 5.60517 5.75456 5.83072 5.87470 6.04572 6.05623 6.09835 6.16006 6.23962 6.32690 6.45189 6.53013 6.58261 6.64429 6.66699 6.77295 6.79259 6.87164 6.98645 7.08777 7.27616 7.50426 7.61955 7.73729 7.90084 8.07576 8.30869 9.26954 9.87748 10.55361 11.45443 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002697 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.773762 B =10379.204970 C =10596.567386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.097 3.903 3 C 0.042 3.958 4 N -0.392 5.392 5 C 0.026 3.974 6 C 0.571 3.429 7 O -0.531 6.531 8 N -0.574 5.574 9 C 0.094 3.906 10 C -0.115 4.115 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.095 4.095 14 C -0.131 4.131 15 C 0.184 3.816 16 N -0.602 5.602 17 C -0.225 4.225 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.146 3.854 26 C 0.138 3.862 27 C 0.116 3.884 28 N -0.443 5.443 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.251 0.749 46 H 0.019 0.981 47 H 0.039 0.961 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.914 -2.140 12.564 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 C -0.120 4.120 4 N -0.109 5.109 5 C -0.114 4.114 6 C 0.356 3.644 7 O -0.407 6.407 8 N -0.304 5.304 9 C -0.031 4.031 10 C -0.154 4.154 11 C -0.159 4.159 12 C -0.127 4.127 13 C -0.097 4.097 14 C -0.169 4.169 15 C 0.059 3.941 16 N -0.328 5.328 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.019 3.981 26 C 0.018 3.982 27 C -0.044 4.044 28 N -0.158 5.158 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.192 0.808 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.089 0.911 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -21.410 -2.615 12.299 24.829 hybrid contribution 0.854 0.652 -0.534 1.200 sum -20.556 -1.963 11.765 23.766 Atomic orbital electron populations 1.20758 0.87382 1.04335 1.03742 1.22653 0.98776 0.89812 0.93198 1.23884 0.90866 0.99437 0.97842 1.68945 1.08175 1.27357 1.06451 1.22288 0.96117 0.90963 1.02047 1.17696 0.84747 0.84244 0.77670 1.90800 1.68147 1.31438 1.50337 1.47883 1.07343 1.06048 1.69112 1.21709 0.98255 0.85044 0.98059 1.22388 0.97400 0.99202 0.96419 1.21231 0.93962 1.01642 0.99059 1.20563 0.97465 0.95348 0.99357 1.20735 0.97812 0.95606 0.95508 1.22951 0.99833 0.98686 0.95462 1.21123 0.86106 0.96303 0.90556 1.44446 1.19293 1.69278 0.99812 1.19027 0.94218 1.30360 0.91758 0.90581 1.24782 0.98418 1.01550 0.95785 1.69977 1.34801 1.52161 0.99940 0.86146 0.83000 0.78996 0.77780 1.21704 1.21789 1.20783 1.21914 0.89984 0.97176 0.89066 1.20913 0.76774 1.02307 0.98242 1.23812 0.89822 0.99366 0.91390 1.68475 1.08313 1.29034 1.09997 0.89599 0.89838 0.89879 0.80764 0.87587 0.91761 0.92512 0.91690 0.90855 0.93784 0.92893 0.90189 0.91943 0.93147 0.94533 0.93408 0.93879 0.96379 0.94274 0.88683 0.91110 0.80041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.19 36.00 0.37 -0.08 16 2 C 0.10 0.77 6.79 -82.28 -0.56 0.21 16 3 C 0.04 0.32 10.88 -17.38 -0.19 0.13 16 4 N -0.39 -4.05 5.07 -9.61 -0.05 -4.10 16 5 C 0.03 0.32 6.59 -82.84 -0.55 -0.23 16 6 C 0.57 8.37 7.69 -12.11 -0.09 8.27 16 7 O -0.53 -9.16 15.82 5.35 0.08 -9.08 16 8 N -0.57 -7.95 2.79 -176.64 -0.49 -8.44 16 9 C 0.09 1.10 4.38 -4.71 -0.02 1.08 16 10 C -0.12 -1.40 6.08 -25.02 -0.15 -1.56 16 11 C -0.12 -1.86 5.27 -28.00 -0.15 -2.00 16 12 C -0.09 -1.48 3.92 -29.47 -0.12 -1.59 16 13 C -0.09 -1.64 0.55 -155.40 -0.08 -1.72 16 14 C -0.13 -2.61 5.03 -24.85 -0.13 -2.74 16 15 C 0.18 4.53 4.72 -2.84 -0.01 4.52 16 16 N -0.60 -15.29 2.89 -169.21 -0.49 -15.78 16 17 C -0.23 -6.28 10.28 -15.09 -0.16 -6.43 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -27.37 10.34 55.49 0.57 -26.80 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.15 2.99 5.79 -1.63 -0.01 2.98 16 26 C 0.14 2.06 4.76 -5.41 -0.03 2.04 16 27 C 0.12 1.31 10.77 -17.00 -0.18 1.13 16 28 N -0.44 -4.62 10.41 -8.95 -0.09 -4.71 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.11 1.16 4.79 -60.99 -0.29 0.86 16 34 H 0.06 0.72 6.49 -52.10 -0.34 0.38 16 35 H 0.06 0.73 7.30 -51.83 -0.38 0.35 16 36 H 0.06 0.68 8.17 -51.73 -0.42 0.25 16 37 H 0.07 1.28 5.06 -52.38 -0.26 1.02 16 38 H 0.04 0.66 8.27 -50.96 -0.42 0.24 16 39 H 0.05 0.76 6.32 -51.58 -0.33 0.43 16 40 H 0.08 1.61 7.21 -51.27 -0.37 1.24 16 41 H 0.06 1.20 5.94 -52.62 -0.31 0.89 16 42 H 0.05 1.04 8.01 -51.41 -0.41 0.63 16 43 H 0.04 0.98 7.48 -52.04 -0.39 0.59 16 44 H 0.05 1.34 7.23 -52.09 -0.38 0.96 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 46 H 0.02 0.38 8.00 -52.16 -0.42 -0.04 16 47 H 0.04 0.77 7.97 -52.05 -0.42 0.36 16 48 H 0.09 1.56 6.86 -51.80 -0.36 1.20 16 49 H 0.07 0.93 8.16 -51.80 -0.42 0.50 16 50 H 0.18 1.92 7.67 -52.49 -0.40 1.52 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -32.80 376.83 -9.51 -42.30 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.55 Total: -0.04 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.15 Total: 3.64 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.55 Total: -59.83 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.80 -9.51 -42.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045910796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.788 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds