Wall clock time and date at job start Wed Apr 1 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38773 * 119.90368 * 2 1 4 4 N 1.31775 * 120.12586 * 179.72039 * 3 2 1 5 5 C 1.33031 * 119.92264 * 0.50988 * 4 3 2 6 6 C 1.48150 * 120.09694 * 179.76591 * 5 4 3 7 7 O 1.21515 * 120.00114 * 186.99435 * 6 5 4 8 8 N 1.34954 * 119.99854 * 6.99619 * 6 5 4 9 9 C 1.43523 * 120.29988 * 358.62535 * 8 6 5 10 10 C 1.54724 * 116.06057 * 270.44267 * 9 8 6 11 11 C 1.54535 * 111.37374 * 302.33793 * 10 9 8 12 12 C 1.48757 * 112.94633 * 340.79638 * 11 10 9 13 13 C 1.51697 * 110.28923 * 85.72262 * 12 11 10 14 14 C 1.55080 * 111.51986 * 38.76574 * 13 12 11 15 15 C 1.54499 * 102.03244 * 70.12708 * 14 13 12 16 16 N 1.47254 * 106.15894 * 29.65441 * 15 14 13 17 17 C 1.36872 * 125.66242 * 176.42723 * 16 15 14 18 18 H 1.08000 * 120.00472 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99805 * 0.02562 * 17 16 15 20 20 N 1.31628 * 120.00013 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00318 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47280 * 90.00038 * 21 19 17 23 23 H 1.48503 * 109.47111 * 210.00492 * 21 19 17 24 24 H 1.48505 * 109.46656 * 329.99788 * 21 19 17 25 25 C 1.47439 * 108.57263 * 356.16284 * 16 15 14 26 26 C 1.46199 * 115.80072 * 269.21333 * 13 12 11 27 27 C 1.39404 * 119.81201 * 359.49133 * 5 4 3 28 28 N 1.32105 * 119.90868 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47204 * 270.02109 * 1 2 3 30 30 H 1.08995 * 109.47116 * 30.02272 * 1 2 3 31 31 H 1.08998 * 109.46848 * 150.02331 * 1 2 3 32 32 H 1.08005 * 119.94054 * 359.97286 * 3 2 1 33 33 H 1.09300 * 107.63627 * 31.26680 * 9 8 6 34 34 H 1.08701 * 108.60937 * 147.54726 * 9 8 6 35 35 H 1.09182 * 109.42480 * 63.36562 * 10 9 8 36 36 H 1.09358 * 108.97818 * 181.90780 * 10 9 8 37 37 H 1.08200 * 110.29846 * 107.64945 * 11 10 9 38 38 H 1.10692 * 107.17500 * 222.42995 * 11 10 9 39 39 H 1.09623 * 110.48267 * 323.78141 * 12 11 10 40 40 H 1.10153 * 109.38006 * 206.04357 * 12 11 10 41 41 H 1.07757 * 113.65077 * 308.76954 * 14 13 12 42 42 H 1.09911 * 109.79618 * 186.09304 * 14 13 12 43 43 H 1.08799 * 110.01195 * 270.83485 * 15 14 13 44 44 H 1.08721 * 110.12117 * 148.76933 * 15 14 13 45 45 H 0.96999 * 119.99915 * 179.97438 * 20 19 17 46 46 H 1.08595 * 110.87817 * 94.78481 * 25 16 15 47 47 H 1.08780 * 110.53081 * 218.67694 * 25 16 15 48 48 H 1.09236 * 109.62610 * 175.82893 * 26 13 12 49 49 H 1.09236 * 109.63185 * 295.58545 * 26 13 12 50 50 H 1.07999 * 120.06138 * 180.22917 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5166 1.2081 0.0056 5 6 4.1846 0.0577 0.0009 6 6 5.6661 0.0590 0.0019 7 8 6.2747 -0.9844 -0.1304 8 7 6.3398 1.2190 0.1498 9 6 5.6278 2.4586 0.2772 10 6 5.3110 3.1993 -1.0438 11 6 6.5992 3.5068 -1.8401 12 6 7.8263 3.4534 -1.0009 13 6 8.3457 2.0305 -0.9185 14 6 8.2012 1.2927 -2.2749 15 6 9.2560 2.0108 -3.1461 16 7 10.3145 2.4560 -2.2243 17 6 11.4791 3.0770 -2.5868 18 1 12.1952 3.3652 -1.8315 19 6 11.7398 3.3364 -3.9253 20 7 10.8667 2.9855 -4.8459 21 14 13.3295 4.1832 -4.4203 22 1 14.3774 3.1615 -4.6709 23 1 13.1045 4.9751 -5.6563 24 1 13.7702 5.0866 -3.3272 25 6 9.9064 2.1265 -0.8463 26 6 7.8374 1.2311 0.1950 27 6 3.4868 -1.1491 0.0009 28 7 2.1657 -1.1451 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6563 2.1369 -0.0004 33 1 4.6792 2.2459 0.7766 34 1 6.1985 3.1218 0.9223 35 1 4.6462 2.5848 -1.6542 36 1 4.8008 4.1383 -0.8115 37 1 6.6643 2.8671 -2.7102 38 1 6.5042 4.5385 -2.2298 39 1 7.6204 3.8379 0.0048 40 1 8.6005 4.0998 -1.4439 41 1 7.2107 1.3508 -2.6953 42 1 8.4829 0.2370 -2.1563 43 1 8.8086 2.8715 -3.6387 44 1 9.6663 1.3219 -3.8804 45 1 11.0488 3.1671 -5.7811 46 1 10.3219 1.1720 -0.5374 47 1 10.1941 2.9222 -0.1627 48 1 8.2157 0.2093 0.1159 49 1 8.1720 1.6641 1.1404 50 1 4.0251 -2.0853 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045910796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:52 Heat of formation + Delta-G solvation = 50.307990 kcal Electronic energy + Delta-G solvation = -31733.567832 eV Core-core repulsion = 27761.932711 eV Total energy + Delta-G solvation = -3971.635121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.56540 -41.49142 -39.82400 -37.53522 -35.86661 -34.77817 -34.30930 -33.82593 -32.26406 -30.55338 -29.59755 -28.41154 -27.30119 -25.99774 -25.72719 -25.35454 -24.14846 -22.40383 -21.87727 -20.55385 -19.77288 -19.04893 -18.80047 -17.87227 -17.40376 -17.14141 -16.82653 -16.65322 -16.47822 -15.99533 -15.90300 -15.48505 -15.21854 -15.04730 -14.83014 -14.37539 -14.07089 -13.89884 -13.76416 -13.60471 -13.56969 -13.34846 -13.24628 -13.08981 -12.90113 -12.81318 -12.66533 -12.32195 -12.22324 -12.03339 -11.98913 -11.78337 -11.66801 -11.50873 -11.43080 -11.17172 -11.09711 -10.87938 -10.70466 -10.28822 -9.94657 -9.55062 -8.88036 -7.83661 -5.18882 -0.68074 -0.01712 1.44343 1.46725 1.55140 1.59668 1.80693 2.49898 2.65654 2.87643 3.05504 3.34272 3.35010 3.49361 3.66368 3.74593 3.83409 3.95309 3.97285 4.09366 4.19516 4.22508 4.26605 4.38487 4.49871 4.54844 4.56861 4.67078 4.77869 4.80668 4.85121 4.87100 4.88388 4.93325 5.00545 5.04900 5.13088 5.17617 5.20776 5.32722 5.36277 5.45427 5.48603 5.56791 5.63301 5.64925 5.72347 5.78020 6.06504 6.18700 6.38623 6.63031 7.00524 7.09753 7.77898 8.44784 9.26964 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002697 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.773762 B =10379.204970 C =10596.567386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.104 3.896 3 C 0.053 3.947 4 N -0.398 5.398 5 C 0.004 3.996 6 C 0.567 3.433 7 O -0.569 6.569 8 N -0.573 5.573 9 C 0.089 3.911 10 C -0.103 4.103 11 C -0.121 4.121 12 C -0.082 4.082 13 C -0.069 4.069 14 C -0.115 4.115 15 C 0.199 3.801 16 N -0.621 5.621 17 C -0.236 4.236 18 H 0.085 0.915 19 C -0.070 4.070 20 N -0.954 5.954 21 Si 0.978 3.022 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.266 1.266 25 C 0.139 3.861 26 C 0.139 3.861 27 C 0.107 3.893 28 N -0.464 5.464 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.220 0.780 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.007 0.993 44 H 0.002 0.998 45 H 0.244 0.756 46 H 0.020 0.980 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.582 -0.315 15.023 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.038 4.038 3 C -0.111 4.111 4 N -0.116 5.116 5 C -0.133 4.133 6 C 0.354 3.646 7 O -0.448 6.448 8 N -0.302 5.302 9 C -0.034 4.034 10 C -0.142 4.142 11 C -0.159 4.159 12 C -0.119 4.119 13 C -0.071 4.071 14 C -0.153 4.153 15 C 0.074 3.926 16 N -0.346 5.346 17 C -0.365 4.365 18 H 0.103 0.897 19 C -0.263 4.263 20 N -0.603 5.603 21 Si 0.807 3.193 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.190 1.190 25 C 0.013 3.987 26 C 0.018 3.982 27 C -0.051 4.051 28 N -0.179 5.179 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.236 0.764 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.025 0.975 44 H 0.020 0.980 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.120 0.880 50 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.061 -0.796 14.804 28.262 hybrid contribution 1.527 0.083 -1.303 2.010 sum -22.533 -0.714 13.501 26.278 Atomic orbital electron populations 1.20935 0.84473 1.05543 1.05110 1.23387 1.00579 0.89241 0.90604 1.24609 0.89863 1.01038 0.95604 1.68820 1.09549 1.26362 1.06821 1.21821 0.94654 0.91967 1.04891 1.18102 0.85969 0.83796 0.76728 1.90770 1.69285 1.32759 1.52033 1.47899 1.06640 1.06825 1.68869 1.21908 0.99238 0.84203 0.98032 1.22316 0.95306 1.00584 0.95964 1.21172 0.95291 1.00944 0.98450 1.20486 0.96707 0.93678 1.01052 1.20625 0.95611 0.96305 0.94532 1.22742 0.98412 0.97612 0.96498 1.20742 0.86929 0.94380 0.90516 1.44698 1.18917 1.69027 1.02008 1.19458 0.95127 1.29738 0.92145 0.89749 1.25658 1.01802 1.02886 0.95924 1.70216 1.36700 1.53643 0.99762 0.85073 0.78950 0.77910 0.77379 1.21622 1.22268 1.19035 1.22123 0.92330 0.97466 0.86819 1.20772 0.78041 1.01035 0.98314 1.23722 0.90432 0.99069 0.91925 1.68532 1.07756 1.30630 1.10994 0.87872 0.86915 0.90411 0.76406 0.85852 0.90227 0.93058 0.88709 0.93910 0.93759 0.89489 0.94174 0.91316 0.94300 0.97477 0.97964 0.94646 0.96203 0.92771 0.90324 0.87990 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 71.24 0.73 0.27 16 2 C 0.10 1.32 6.79 42.65 0.29 1.61 16 3 C 0.05 0.58 10.88 84.83 0.92 1.51 16 4 N -0.40 -7.06 5.07 -184.32 -0.93 -7.99 16 5 C 0.00 0.10 6.59 41.88 0.28 0.38 16 6 C 0.57 16.47 7.69 86.85 0.67 17.14 16 7 O -0.57 -20.31 15.82 -3.76 -0.06 -20.37 16 8 N -0.57 -15.01 2.79 -830.96 -2.32 -17.33 16 9 C 0.09 1.81 4.38 87.52 0.38 2.20 16 10 C -0.10 -2.20 6.08 31.70 0.19 -2.01 16 11 C -0.12 -3.60 5.27 29.77 0.16 -3.44 16 12 C -0.08 -2.61 3.92 28.82 0.11 -2.50 16 13 C -0.07 -2.37 0.55 -52.76 -0.03 -2.40 16 14 C -0.11 -4.77 5.03 31.82 0.16 -4.61 16 15 C 0.20 10.49 4.72 86.74 0.41 10.89 16 16 N -0.62 -32.66 2.89 -689.27 -1.99 -34.65 16 17 C -0.24 -13.45 10.28 84.04 0.86 -12.59 16 18 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 19 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 20 N -0.95 -59.50 10.34 21.65 0.22 -59.28 16 21 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.14 5.70 5.79 87.43 0.51 6.20 16 26 C 0.14 4.00 4.76 83.64 0.40 4.40 16 27 C 0.11 2.40 10.77 84.93 0.91 3.32 16 28 N -0.46 -9.02 10.41 -182.22 -1.90 -10.92 16 29 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.11 -0.10 8.08 -2.39 -0.02 -0.12 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.12 2.20 4.79 -20.45 -0.10 2.10 16 34 H 0.08 1.41 6.49 -2.54 -0.02 1.39 16 35 H 0.05 1.18 7.30 -2.29 -0.02 1.17 16 36 H 0.09 1.53 8.17 -2.20 -0.02 1.51 16 37 H 0.04 1.53 5.06 -2.81 -0.01 1.51 16 38 H 0.04 1.30 8.27 -1.48 -0.01 1.29 16 39 H 0.09 2.20 6.32 -2.06 -0.01 2.19 16 40 H 0.04 1.61 7.21 -1.77 -0.01 1.60 16 41 H 0.07 2.78 5.94 -3.04 -0.02 2.76 16 42 H 0.04 1.69 8.01 -1.90 -0.02 1.67 16 43 H 0.01 0.41 7.48 -2.49 -0.02 0.39 16 44 H 0.00 0.13 7.23 -2.53 -0.02 0.11 16 45 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.02 0.83 8.00 -2.60 -0.02 0.81 16 47 H 0.05 2.07 7.97 -2.50 -0.02 2.05 16 48 H 0.08 2.58 6.86 -2.26 -0.02 2.56 16 49 H 0.10 2.36 8.16 -2.26 -0.02 2.34 16 50 H 0.17 3.94 7.67 -2.91 -0.02 3.92 16 Total: -1.00 -77.10 376.83 3.35 -73.76 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.88 Total: 11.06 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 7.42 Total: 16.73 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -6.92 Total: -130.17 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.37 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -77.10 3.35 -73.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045910796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.063 kcal (2) G-P(sol) polarization free energy of solvation -77.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds